Silkworm Genome Informatics Database

Gene

KWMTBOMO15980

Pre Gene Modal

BGIBMGA005733

Annotation

PREDICTED:_uncharacterized_protein_LOC101739826_[Bombyx_mori]

Location

Bomo_Chr27(+):5057213-5072067 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.305

CDS

ATGGAACCCTTGGAAGTGGACGACCTCCACTTCTACCCGTGTACATGTGGATACCAAATATGTCGGTTTTGCTGGAATCGTATTCGAGAAGGCGAGAACGGCCTTTGCCCAGCTTGTCGGAAGGCATACCCAGAAAACCCGGCAGACTTCATTCCTCTCAGTCAAGAGCAGGTGGCAGCGATAAAGACGGAGAAGAAAGCCCGCGAGCAGAAACGTCGCAACAAGACGCTAGAGTCGCGGCGTGCGCTCGCGAACGTTCGCGTCGTACAGAACAACCTCGTGTTCGTCGTGGGCCTGCCCGTCAGACTCGCAGACCCGGAGATTTTAAAACGGCAAGAGTACTTTGGAAAGTATGGCAAAATTCACAAAGTAGTTATAAACCAAAGTACGACATATGCAGGGTCACAGGGTCCGTCCGCGTCGGCGTACGTGACGTACGTGTCGTCGGCGGACGCGCTGCGTGCCATCCAGGGCGTCAACAACGTGACGCTCGACGGACGAGTGCTGAAGGGCTCGCTCGGCACCACCAAGTACTGCGCCAACTTCATGAAGAACCAGCCCTGTCCCAAGCCCGACTGTATGTACCTGCATGACCTAGGTGATCCGAAGGCGTCCTTCACGAAGGAAGAAATGCACGCCGGCCTGCATCAGGTCTACGAGAGGAAGCTGCACAATCAGCTGCTCGCCTCGCAGCAACGGGATAAAAACAACGAGGACAAGCAACTTAACGGTTCAGGTAATTCTAGTACGAATGCAGAAAAGAGCGGTTCAAAAGATGGTAATCAATCGAACTATATACCGACGACAGTGGTCACATCGTCACATATAAACAACGTAGTCAATTCTAAATCTAAAGAGGAATGTGCGAATGGCAGTACCAGTTCGAGCAGCAGTAGCAGTAGCAGGAGCGACAGCAGTGATAGCAGCAGCAGTAGTAGCGGTAGCAGTGCCAACGGGAAGGAAGCCTGGCCCAGCCTCGGGTCCTCCCCTCCTTCAGATAGTCCCGCCAGAAAACAAACGAGTCCGAAACCACAACAATTACACGTTAAGTCACAAGAAAACGGCATATCAGGGTCGTCCAGTCCCACGGAACTGCACACGGACACGGCACAGCAGCAGGCACAAACGAGAAATGTTAAAGATACACACACCGACACAAACAGAACGAGAAATAAAGACACGAACGGCACGAGCACAACACACACAAAGAAAAGCAAAAACGAAAAGTCCAAACACAAGCCCGGCCACAGCACCGACAGCGGACCCGCGGACCACGCGCCGCGCCCGCACTCCTCGGTCTTCGAGACAGACTCGCAACACAACTACATCTCCAATGACCTGGACGAATTAGAATCGGATCGACATAGCCTGCTGGAGACCCACGACCTGCTGGAGAGCAGCGACCACAGCCTGCTGGACGACGACACCCACGACCTGCTCAACGACGCCGGCGACGTCCTCATGATGCAGAGGCACCGAGACATGCTGGCCGGGCTCGTCGACGGCGGTCACCTGCTGCCGCAGCTCAAGGGGCCCGTGCTGAACGGCTACGGATTACTGGACAGAGATATTAGTTATGTTAACGATAGGCCAATTAGTCAAATGAACCAGGGTTTGCTGGACCAGAAGGAGATGCTGTTGAGGGAACGAGAGCAGAGCGACATGCTGCTGCGGCAGAGGGAGCTGCTGGCGCGGCAACACAACGTCATGGTCGAGCCTAAGCATTACATGCCCGCCTCCAGTATAGGAATGGAATCCGCTAGTGAACTATTAGGTGCTAATTACCACCGGAGCCCCAGCATGGTGCCGGCGTTCGGCGCGCTGCCGCCCTACGCGCTGCCCCGGCCGCAGGTGCTGCACGCGCCGCCCGCGCACGCCGCGCACGCCGCGCTGCTCAACGGGTTCGACGCCGCACACAACAGTGAAGGTCGATATTTAGCGGAGAACATGGATAAGTTCTTCACGGACTTCCACAAGGCGCAGCAGCTGCGGCTGCACGCGCGCGCCGGCGACGAGCGGCGCTACCAGCTGCCGCGGAACGTGCTCAGCGCGGAGGCACTCGAGATGGAACACAAGCAGAGGTGA

Protein

MEPLEVDDLHFYPCTCGYQICRFCWNRIREGENGLCPACRKAYPENPADFIPLSQEQVAAIKTEKKAREQKRRNKTLESRRALANVRVVQNNLVFVVGLPVRLADPEILKRQEYFGKYGKIHKVVINQSTTYAGSQGPSASAYVTYVSSADALRAIQGVNNVTLDGRVLKGSLGTTKYCANFMKNQPCPKPDCMYLHDLGDPKASFTKEEMHAGLHQVYERKLHNQLLASQQRDKNNEDKQLNGSGNSSTNAEKSGSKDGNQSNYIPTTVVTSSHINNVVNSKSKEECANGSTSSSSSSSSRSDSSDSSSSSSGSSANGKEAWPSLGSSPPSDSPARKQTSPKPQQLHVKSQENGISGSSSPTELHTDTAQQQAQTRNVKDTHTDTNRTRNKDTNGTSTTHTKKSKNEKSKHKPGHSTDSGPADHAPRPHSSVFETDSQHNYISNDLDELESDRHSLLETHDLLESSDHSLLDDDTHDLLNDAGDVLMMQRHRDMLAGLVDGGHLLPQLKGPVLNGYGLLDRDISYVNDRPISQMNQGLLDQKEMLLREREQSDMLLRQRELLARQHNVMVEPKHYMPASSIGMESASELLGANYHRSPSMVPAFGALPPYALPRPQVLHAPPAHAAHAALLNGFDAAHNSEGRYLAENMDKFFTDFHKAQQLRLHARAGDERRYQLPRNVLSAEALEMEHKQR

Uniprot

A0A3S2TRY5 S4NNB6 A0A2H1VRH1 A0A0N1ICA7 A0A2A4JJ28

Pubmed

23622113 26354079

EMBL

RSAL01000012 RVE53505.1 GAIX01014001 JAA78559.1 ODYU01004006 SOQ43443.1 + More
KQ459933 KPJ19287.1 NWSH01001391 PCG71423.1

Proteomes

UP000283053 UP000053240 UP000218220

Pfam

PF00076 RRM_1

Interpro

IPR035979   RBD_domain_sf        + More
IPR000571   Znf_CCCH
IPR013083   Znf_RING/FYVE/PHD
IPR039515   NOT4_mRING-HC-C4C4
IPR003954   RRM_dom_euk
IPR034261   CNOT4_RRM
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR039780   Mot2
IPR000504   RRM_dom
IPR001841   Znf_RING
IPR011050   Pectin_lyase_fold/virulence

SUPFAM

SSF54928 SSF54928 + More
SSF51126 SSF51126

Gene 3D

3.30.40.10 3.30.70.330

CDD

cd16618 mRING-HC-C4C4_CNOT4
cd12438 RRM_CNOT4

ProteinModelPortal

A0A3S2TRY5 S4NNB6 A0A2H1VRH1 A0A0N1ICA7 A0A2A4JJ28

PDB

2CPI E-value=1.03373e-25, Score=292

KEGG

101739826 K10643 CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] | (RefSeq) uncharacterized LOC10173982

GO

GO:0003723 GO:0046872 GO:0004842 GO:0030014 GO:0003676 GO:0000166 GO:0016021 GO:0004888 GO:0007166 GO:0016020 GO:0000287 GO:0006281 GO:0006259

PANTHER

PTHR12603

Length:

694

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0389800000000001

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.00185

outside

1 - 694

Pi

196.099305

Theta

166.728568

Tajima's D

0.713743

CLR

0.081667

CSRT

0.582170891455427

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics