Gene

KWMTBOMO15978  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005731

Annotation

PREDICTED:_catenin_delta-2_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr27(-):4962468-4996766      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.35

CDS

ATGTTACTAGGACACTGGCTGTTCCCATTTGATAGAGATTTGCTGTTTGAACTGTCGGGTATACCGAATTTTTTGGCGAAGATTAGAGCTTTTGGGGCTACACTTTTGAACGGTCCCGTGGAGGGTGCGTACGGTTCGCAACACAGTCCCGTGTCGCGATCGGACGCCTCCACAGAGGACGCAGAGCTGTCAGCGGCGTTAGCGCATCAACACCATCTAGCTATGCAGGCTGGTGACTATCCCCCGATGAGCAGCGGCGTCGATCCTGACTACGGGCAGTACGTGTCGTCGCCGGCAGCTCACTACAACCACATGGGGCATTTGACTATGGCGCCCTCGCAGAAATATCCGCATGTAATGGATTCGGTGTCGGTGAGCGGGGGCGGGAGCTATGCGGGAGTGGGGGGCGCGGGGGGCGCGGGCCACTACGGCACGTACGGGCACTACGGCGCGGCCGCCTACCCACAGCCCGCCTACATGGTCGATCCGACCCAAGTACCGCCTTATATGGCACAGGAGTACGTCGAGGGAGGAGGTAGTGCGTCACCCAGGAGTGCTTCACCTGGTGCATTGCCGCAGCACAATCTACATCTGCAACAGAGGTACGACTCGGCGTCTCTGGAGCAGTTGGGGCGTCATTACTGCGTGACGTCACCGCGGGGCGAGTACGCAACGGACGCGTACGGCTATCAACACTACCCCGCCGCGTACGACCCGCCGCATCAACCGCCGCCTTTCAAGGACTCACAAAACGGACTAAGCATGGGTAGCGCTGGAGGACAATCAATGTATGGAGACGAGGAGGAATTGCAGAAACAAATGGCTAGCATGGCTTTAGTACACGGAGGTCGTGAAGACGGAGGCGGGCTGCAGTGGCGCGATCCGAACCTATCGGAGGTGATCGGCTTCCTGAACTCTCCGTCGGATGTCGTCAAAGCTAACGCCGCAGCCTATCTACAGCACCTGACCTATATGGACGACCCTAACAAACAGAAGACCAGAAGTTTAGGCGGCATCCCGCCCCTTGTGCGGCTGGTGTCGCACGAGAACCCGGAGGTGTGCCGTAACGCGTGCGGCGCGCTCCGCAACCTGTCGTACGGGCGCCAGAACGACGAGAACAAGCGCGCCATCTGCGACGCCAACGGCATCCCCGCGCTCATGGCGCTCTTGTGTCGAGCCACCGACATGGAGGTTAAGGAATTAGTTACCGGTGTTATATGGAATATGTCATCGTGCGAGGACCTCAAGCAGTCGATAATCGATGACGCGGCTCAGGTCATTGTGAACAAAGTTATCATACCGCATTCTGGCTGGCATCCCACCAACCCTGGAGATACTTATTGGTCTACCGTATTCCGCAACGCGTCGGGCGCGCTGCGCAACGCGTCGAGTGCGGGCGAGTACGCGCGGCGCCGCCTGCGCTGCCTGGCGGGGCTGGCGGAGGCGTTACTGCACGCGGTGCGCACGGCGCTGCACGTCAACGCGATCGGCACCAAGGTCGTCGAGAACTGCGTCTGCGTGCTACGGAACCTCTCCTATAGATGTCAGGAAATCGAAGACCCCCTCTACGACACTCGAGCACCTCCCACACAGTCGTCGGGACAAGCCAGGATACAGGCCAGCGCTTCGAAAGAAAACCTCGGCTGTTTCGGAGGAAGTAAAAAGAAAAAGGAAGGTTCCTCATCGTCGAACTCGACCAGTCCACTCGGGAAGTCCGAGCCCGAACCGCAGCCCGTCGAGAACAACACCCAGCTCGGTTACTCCGTACCCAAAGGAACGGAGATGCTCTGGTCTCCTGAGGTGGTCCCGCTGTACATGGCGCTGCTGCAGACGTGCTCCAACCCGGAGACGCTGGAGGCGGCGGCCGGCGCGCTGCAGAACCTCGCCGCCTGCTACTGGCAGCCCTCCATCGACATACGCGCCGCCGTCAGGAAAGAAAAAGGGTTACCGATCCTGGTGGAACTGTTACGTATGGAAGTGGACCGCGTGGTGTGCGCCGTGGCCACGGCTCTACGTAACCTGGCCATCGACCAACGCAACAAGGAGCTGATCGGGAAGTACGCGATGCGCGACCTCGTGCAGAAGCTGCCCAGCGGGAACCAACAGCACGACCAGGGTACTTCGGACGACACCATAGCCGCCGTGCTGGCGACCCTCAACGAAGTGATAAAGAAGAGCGGCGAGTTCTCGCGGTCGCTGCTGGAGGCGGGCGGCGTGGAGCGGCTCCTCAACCTCACCAAGCAGCGGCACCGGCACACGCCCAGGGTCCTCAAGTTCGCAGGTCAAGTGCTGATGACGATGTGGTCCCACGCGGAGCTGCGCGAGGTGTACCGCAAGCACGGCTGGCGCGAGGCCGACTTCCTGACGCCGGCGCGCGCCGCCCAGCAGAGGTCGTCCTCGGGCAGCAGCGCGGGTCCGGGGGCCGCGTCGGGCGCGCCGCACTCGCCCGGGCACGCCAACAGCACGCTCAGCCGGCCCATGGCCTCGACCGGCGGCACCAGATACGAGGACCGCACCATCCGCAGGCATCGCGAGAACGATGACGTGCCGCCGATGGATGCGAACAACTACCAAGAGGGGATGGGCATGGGCAATCCGAACGGCCGGCCAATGAACCTGCAGGGCGTGCAGGCTCAGATGCCAATGCCGCCCAGCAGTCGCTAG

Protein

MLLGHWLFPFDRDLLFELSGIPNFLAKIRAFGATLLNGPVEGAYGSQHSPVSRSDASTEDAELSAALAHQHHLAMQAGDYPPMSSGVDPDYGQYVSSPAAHYNHMGHLTMAPSQKYPHVMDSVSVSGGGSYAGVGGAGGAGHYGTYGHYGAAAYPQPAYMVDPTQVPPYMAQEYVEGGGSASPRSASPGALPQHNLHLQQRYDSASLEQLGRHYCVTSPRGEYATDAYGYQHYPAAYDPPHQPPPFKDSQNGLSMGSAGGQSMYGDEEELQKQMASMALVHGGREDGGGLQWRDPNLSEVIGFLNSPSDVVKANAAAYLQHLTYMDDPNKQKTRSLGGIPPLVRLVSHENPEVCRNACGALRNLSYGRQNDENKRAICDANGIPALMALLCRATDMEVKELVTGVIWNMSSCEDLKQSIIDDAAQVIVNKVIIPHSGWHPTNPGDTYWSTVFRNASGALRNASSAGEYARRRLRCLAGLAEALLHAVRTALHVNAIGTKVVENCVCVLRNLSYRCQEIEDPLYDTRAPPTQSSGQARIQASASKENLGCFGGSKKKKEGSSSSNSTSPLGKSEPEPQPVENNTQLGYSVPKGTEMLWSPEVVPLYMALLQTCSNPETLEAAAGALQNLAACYWQPSIDIRAAVRKEKGLPILVELLRMEVDRVVCAVATALRNLAIDQRNKELIGKYAMRDLVQKLPSGNQQHDQGTSDDTIAAVLATLNEVIKKSGEFSRSLLEAGGVERLLNLTKQRHRHTPRVLKFAGQVLMTMWSHAELREVYRKHGWREADFLTPARAAQQRSSSGSSAGPGAASGAPHSPGHANSTLSRPMASTGGTRYEDRTIRRHRENDDVPPMDANNYQEGMGMGNPNGRPMNLQGVQAQMPMPPSSR

Uniprot

H9J889   A0A2A4JC50   A0A0N1I4E0   A0A2A4JAL4   A0A2H1VRG3   A0A0N1IJJ4   + More
A0A139WP29   D7EIL1   A0A139WP24   A0A139WPD3   A0A336M7C7   A0A0T6AUU1   A0A1W4XD55   A0A1W4XDI4   A0A1W4XMQ9   V5GVW3   N6T1Z7   A0A1Y1MT13   A0A1Y1MRB2   A0A1Y1MPK0   A0A1Y1MPN3   T1PP85   A0A1I8MI25   A0A0L0BSJ4   A0A1A9YBZ1   A0A1B0BN15   A0A1A9ZUZ3   A0A1A9VQU7   A0A1A9W107   A0A1I8NXQ2  

Pubmed

19121390    26354079    18362917    19820115    23537049    28004739    + More
25315136    26108605   

EMBL

BABH01038473    NWSH01002162    PCG69012.1    KQ458565    KPJ05807.1    PCG69011.1    + More
ODYU01004006    SOQ43441.1    KQ459933    KPJ19284.1    KQ971307    KYB29683.1    EFA12047.1    KYB29682.1    KYB29681.1    UFQS01000654    UFQT01000654    SSX05817.1    SSX26176.1    LJIG01022815    KRT78574.1    GALX01004083    JAB64383.1    APGK01047062    KB741077    KB632384    ENN74099.1    ERL94230.1    GEZM01025057    JAV87610.1    GEZM01025059    JAV87608.1    GEZM01025058    JAV87609.1    GEZM01025056    JAV87611.1    KA649807    KA649808    AFP64437.1    JRES01001535    JRES01000890    KNC22199.1    KNC27526.1    JXJN01017168   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007266    UP000192223    + More
UP000019118    UP000030742    UP000095301    UP000037069    UP000092443    UP000092460    UP000092445    UP000078200    UP000091820    UP000095300   

PRIDE

H9J889   

Pfam

PF00514   Arm

Interpro

IPR000225   Armadillo        + More
IPR016024   ARM-type_fold       
IPR028446   JAC-1       
IPR028435   Plakophilin/d_Catenin       
IPR011989   ARM-like       

SUPFAM

SSF48371   SSF48371       

Gene 3D

1.25.10.10    

ProteinModelPortal

H9J889   A0A2A4JC50   A0A0N1I4E0   A0A2A4JAL4   A0A2H1VRG3   A0A0N1IJJ4   + More
A0A139WP29   D7EIL1   A0A139WP24   A0A139WPD3   A0A336M7C7   A0A0T6AUU1   A0A1W4XD55   A0A1W4XDI4   A0A1W4XMQ9   V5GVW3   N6T1Z7   A0A1Y1MT13   A0A1Y1MRB2   A0A1Y1MPK0   A0A1Y1MPN3   T1PP85   A0A1I8MI25   A0A0L0BSJ4   A0A1A9YBZ1   A0A1B0BN15   A0A1A9ZUZ3   A0A1A9VQU7   A0A1A9W107   A0A1I8NXQ2  

PDB

3L6Y     E-value=2.57639e-81,     Score=773

KEGG

101738442    K23491 catenin delta-2 | (RefSeq) catenin delta-2

PATHWAY

04310    Wnt signaling pathway - Bombyx mori (domestic silkworm)

GO

GO:0032956   GO:0045296   GO:0098609   GO:0010172   GO:0005913   GO:0005634   GO:0005737   GO:0005911   GO:0005886   GO:0007043   GO:0005515   GO:0005488   GO:0020037   GO:0016021   GO:0004888   GO:0007166   GO:0016020   GO:0000287   GO:0006281   GO:0006259  

PANTHER

PTHR10372:SF27   PTHR10372  

Length:

887

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00355

Exp number, first 60 AAs:

0.00037

Total prob of N-in:

0.00012

outside

1  -  887

 

 

Pi

191.756613

Theta

159.903986

Tajima's D

0.680564

CLR

0.122039

CSRT

0.566721663916804

Interpretation

Uncertain