SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15973
Annotation
reverse_transcriptase_[Bombyx_mori]
Full name
Probable RNA-directed DNA polymerase from transposon BS      
Alternative Name
Reverse transcriptase
Location in the cell
Mitochondrial   Reliability : 1.427 Nuclear   Reliability : 1.929
 

Sequence

CDS
ATGCCCCCCCTCGTAGGCCCCTCAGGCCGACTCGCGGCGTTTGATGATGACGAAAAAGCAGAGTTGCTGGCCGATACATTGCAAACCCAGTGCACGCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGTCTCCTTGCCACCCTCGGATGCGTTACCACCCGTCACCCCGATGGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCACAAGGCTCCCGGTTCCGACGGTATATCCAACCGCGTTATTAAACTTCTACCCGTCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCCGGGAAACCAAAAAATCATCCGACGAGCTACCGCCCGATTAGCCTCCTCATGTCTCTAGGAAAACTATATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTCATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAACGGTTTGATTTTCAAACTATTCAACATGGGTGTGCCGGATAGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGATCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTTTCACCCCTCCTATTTAGCTTATTCGTTAACGATATTCCCCGGTCGCCGCCGACCCATTTAGCTTTATTCGCCGACGACACGACTGTTTACTATTCCAGTAGAAACAAGTCCCTAATCGCGAAGAAGCTTCAGAGCGCAGCCCTAGCCCTAGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGTACTGCGGTGCTATTTCAGAGGGGAAGCTCCACACGGATTTCCTCCCGTATTAGGAGGAGGAATCTCACACCCCCGATTACTCTCTTTAGTCAATCCATACCCTGGGCCAGGAAGGTCAAGTACCTGGGCGTTACCCTGGATGCATCGATGACATTCCGCCCGCATATAAAATCAGTCCATGACCGTGCCGCGTTTATTCTCGGTAGACTCTACCCCATGATCTGTAAGCGGAGTAAAATGTCCCTTCGGAACAAGGTGACACTTTACAAAACTTGCATAAGGCCCGTCATGACTTACGCGAGTGTGGTGTTCGCTCACGCGGCCCGCACACACATAGACACCCTCCAATCCCTACAATCCCGCTTTTGCAGGTTAGCTGTCGGGGCTCCATGGTTCGTGAGGAACGTTGACCTACACGACGACCTGGGCCTCGAATCAATTCGGAAATACATGAAGTCAGCGTCGGAACGATACTTCGATAAGGCTATGCGTCATGATAATCGCCTTATCGTAGCCGCCGCTGACTACTCCCCGAATCCTGATCATGCAGGAGCCAGTCACCGTCGACGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAACCTTTGCACTAGACGTCTTCAGCTCTAGGAGCAGGCTTAGGGACCTCGGTAACCGTACTCGTCGAACTCGACAAAGAGTTCGCCGTGCAACCTAA
Protein
MPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRVSLPPSDALPPVTPMEVKDLIKDLRPHKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRSLTAGVPQGSVLSPLLFSLFVNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQRGSSTRISSRIRRRNLTPPITLFSQSIPWARKVKYLGVTLDASMTFRPHIKSVHDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITFALDVFSSRSRLRDLGNRTRRTRQRVRRAT

Summary

Catalytic Activity
a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)
Cofactor
Mg(2+)
Mn(2+)
Keywords
Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  
Feature
chain  Probable RNA-directed DNA polymerase from transposon BS
EC Number
2.7.7.49
EMBL
U07847    AAA17752.1    AB018558    BAA76304.1    AB055391    BAB21761.1    + More
KC165845    AFY12622.1    KQ459265    KPJ02064.1    AF081103    AAC72921.1    KQ459259    KPJ02068.1    AF081101    AAC72919.1    GEZM01008457    JAV94772.1    GALX01005359    JAB63107.1    KQ971729    KYB24751.1    GALX01005299    JAB63167.1    KQ973342    KXZ75569.1    GGMR01019198    MBY31817.1    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02014862    ABLF02014866    ABLF02061908    ABLF02003961    ABLF02059872    ABLF02042518    ABLF02057746    ABLF02008933    GGMR01016114    MBY28733.1    KK117880    KFM71667.1    GBBI01004395    JAC14317.1    GGMS01002955    MBY72158.1    GGMR01000676    MBY13295.1    GGMR01003407    MBY16026.1    GGMR01018716    MBY31335.1    GGMS01000737    MBY69940.1    ABLF02033757    GFXV01007093    MBW18898.1    GGMS01006359    MBY75562.1    GGMS01017914    MBY87117.1    GEZM01038405    JAV81653.1    RPOV01000134    RPJ78669.1    GGMS01012005    MBY81208.1    GGMS01008766    MBY77969.1    NEVH01020071    PNF21969.1    NEVH01010546    PNF32261.1    NEVH01003017    PNF40781.1    NEVH01007443    PNF35684.1    GGMS01004685    MBY73888.1    NEVH01023962    PNF17612.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NWSH01000032    PCG80497.1    NEVH01018383    PNF23463.1    ABLF02034467    GEZM01053022    JAV74219.1    ABLF02021177    ABLF02027367    ABLF02066338    GBBI01001646    JAC17066.1    NEVH01005938    PNF38077.1    GFTR01008038    JAW08388.1    AY060438    AAL25477.1    NEVH01006721    PNF37225.1    NEVH01001355    PNF42855.1    ABLF02008463    NEVH01006736    PNF36716.1    GBBI01004571    JAC14141.1    GBGD01000880    JAC88009.1    NEVH01021205    PNF19912.1    NEVH01000280    PNF43672.1    ABLF02037660    GBGD01000799    JAC88090.1    NEVH01023961    PNF17613.1    NEVH01007838    PNF34986.1    ABLF02020655    ABLF02039168    ABLF02061060    ABLF02024246    NEVH01014858    PNF27387.1    NEVH01000269    PNF43694.1    NEVH01002716    PNF41415.1    NEVH01019964    PNF22161.1    NEVH01026386    PNF14434.1    LBMM01014395    KMQ85192.1    NEVH01012089    PNF30491.1    NEVH01002704    PNF41489.1    NEVH01007393    PNF35987.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    NEVH01006754    PNF36554.1    NEVH01007578    PNF35646.1    AF012049    AAC24972.1    NEVH01011985    PNF31054.1    PCG80496.1    NEVH01017542    PNF24034.1    NEVH01019376    PNF22596.1    GFTR01008262    JAW08164.1    S59870    AAB26437.2    ABLF02008153    ABLF02008462    ABLF02008464    NEVH01019080    PNF22876.1    GGMS01002992    MBY72195.1    GEZM01074951    JAV64378.1    GGMS01017365    MBY86568.1    KK113014    KFM59099.1    NEVH01009134    PNF33528.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01027074    PNF13841.1    NEVH01020940    PNF20481.1    NEVH01017559    PNF23833.1    GGMR01014053    MBY26672.1    GDHC01014349    JAQ04280.1    NEVH01026154    PNF14491.1   
Pfam
PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos
PF07530   PRE_C2HC
PF10551   MULE
Interpro
IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR018289   MULE_transposase_dom       
IPR036875   Znf_CCHC_sf       
SUPFAM
SSF56219   SSF56219        + More
SSF57756   SSF57756       
Gene 3D

Ontologies

Topology

Length:
577
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
3.75393000000001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.04163
outside
1  -  577
 
 

Population Genetic Test Statistics

Pi
212.804465
Theta
39.123611
Tajima's D
3.969649
CLR
2.909312
CSRT
0.99870006499675
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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