Silkworm Genome Informatics Database

Gene

KWMTBOMO15970

Pre Gene Modal

BGIBMGA005714

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_latrophilin_Cirl-like_[Bombyx_mori]

Location

Bomo_Chr27(-):4282945-4307041 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.139 PlasmaMembrane Reliability : 1.949

CDS

ATGAGCTCAGAGCCACGATATGAGACAGCGTACGCCTGTGAAGGGAAGACCCTTAAGATAGGCTGCGGCGAGGGATCCGTGATTCATCTAATAAGGGCGAACTACGGTCGTTTCTCGATAACGATATGCAATGACCACGGGAACACCGACTGGAGCGTAAATTGCATGTCCACGAGGAGTTTGAGGGTTTTGCATAGCAAATGCAGCATGCACCAGAATTGCAGTATATCGGCCAACACGAATATATTTGGTGATCCGTGTCCTAATACGTTGAAGTATTTAGAAGCGCATTATCAATGTGTGCCGGCTTCAACAACAAGCACGACCAACAGACCGTCTCCTCCCTGGCTAATCACGTCTCCTCAAACGGTGTGGAGGTCCACCATCGCTCCGCTACCGAAGAACCCAGTCCAAACGCAGAATGAGAGGAAGAAACCAACTGTGATCACACCGCCCACATTCAGGCCTCACATTACTTTACCTCCAGAAGTAAAGTTGGGCGACATTGGGACCAAGAAGACAACTCTAAGACAACCAGATACATCGTCGGAGAAGGAGCCTTCAGTGAGCCCCAAGGACGTCATTCCTGAAGAGAAAGATGAAACACCCAAAGAAGTTGAACTAGACCAAAACCAAAGAAACGACAATCCTGCGATAGAAGAAGATCCAGAACCAGTAACTGAAGAACCACCTAAAGAAGATGATTCCGATTTGACTGTATCAGTCAATTCACCACCAAAAGACAAACATGATATTCTGCAAGATTTATTCCCAACGAAAGAAATAAAAGCAATCGCCCGCCACGCTTACTGTCCTCAAGTGACAGCTAGAGGCTTACTGTGGAATTGGACATTGGCGGAGACTTATGGGGTGCAGCCGTGTCCTGGTGGAGCTACCGGACTGGCTCGATGGAAATGCACACTAACACCACATTACTACGTTGGAGACGAAAAACCAAGAAGACGAACGGGTCTACCCTCAGGAGAGAATTTCCATGATTTAGGTCTAGACCAACCCGTGGACAAGCACTTGCAATTGGTCCGACGGCTGGGCTCGGAAGTGCTCCTTAAAGGCCGCAATGGTGACACGCCAGAACTAATGGTCGATTATAGAGGGAGCAGCCTTCCTGATGCTCAGGCATCTAGTGACAACTCTCTCATCAATGTTGAACAGATTTACACAGATTTAGTACCAGAATGGCATGGAGCATCACCAGACCTTAGCGAGTGCAGATCCGTATGGCTGAACAATTTGGAAGCGAGGGTCAGAGAAGGAGAATCGCTACTTAGTATCAGCAATGATTTGGCACAGGTAACATCTTCGAAGACCCTCTACGGCGGAGACATGATGACAACTACGAGTATCATGAAGAAGCTAGCCCAGCGGATGTCGCAGAACATACAAAGCTTCCGGGACCCGAGCCAAAGAGAAGCTCTCGTTACCGATATGCTGCTTGGAGTTATTAAAACTGGATCGAATCTTCTAGAAGAGAGTCAGCGAGCGTCCTGGGGCGACTTGAGCGTGGAAGGACAGAACCGCGTCGCCAGTGCACTGCTCACGCACTTAGAAGAAAACGCCTTCTTACTAGCAGATGCCGTTTCAAAAGAGAAAACAATTTTACAAATCGTCAAAAACATATGCCTCTCCGTGAGAGTTTTGGAAGTGAAAAACGTAGAAGATGAAACATTCCCATCTGTGATAGCCCAAGAACAGTGGAAGGCTTCAGAAGACATCATTACGATACCAAAAGCTGCTTTATTAGACAACCGACAAAACGATCTGGTCAGGATTGTATTCTTCGCGTTCGATCGCCTCGAAGAAATTCTGCCCCCGACCTTCGGCAAGACCGCCCCTCACTACGCGCCCCACCGCTCCGAGGTCGGGGGGGCGCCCGCGTCCTCCACCAGCATTAACTCTGAGAAGGAAAAGAAAAATATCACAAGGCTACTGAATTCCAAGGTGATATCCGCGAGTTTAGGGAACGGCCGCCATATCCAGCTCTCGCAAATGGTCAAAGTCACCATGAAGCATCTGCAAACGGAGAACGTAACCAATCCCGCCTGCGTGTTCTGGGATTATACTTTGCATGGCTGGTCCCCTGAAGGTTGTGAGGTGGAGTGGACGAACTCGACTCACACCGGCTGCGCGTGCTCCCACCTCACGAACTTCGCCGTCCTGATGGACGTTCACGGCGTGGCCCTCAGCGCTGCCCACGAGCTCGCCCTGCAGACCCTGACGTACGTCGGCTGCGGGATATCCACTGTCGCTCTGTCTGCTGCCATGATCGTGTTCACCTGCTTCGGGAACACTAAGTCGGATCGCAGCTTAATCCATAAGAACCTATGCGCCTGTCTGCTTGTCGCCGAAGTAGTGTTTCTGGCCGGTATCGATAAAACACAGAATAGAATATTCTGCGGGATCATCGCTGGGCTGTTGCACTATTTCTTCTTGGCGGCCTTCGCTTGGATGTTTCTAGAAGGGTTCCACCTGTACGCGATGCTGGTGGAGGTGTTCGAGCCGGAGCACCCTCGCGCGCGCTGGTACTGCGCATGCGCGTACCTGGCGCCGGCGCTGGTGGTGCTCGCGTCGGCGGCCGCGTACCCCGGCGGCTACGGCACCGCCCAGCACTGCTGGCTCTCCACCGACCGCATGTTCATCATGAGCTTCGTCGGACCCGTCACCTTGGTTTTGTTGGCCAACTTGATATGTCTGAGCATGGTAATCTACATGATGTGCACTCACTCCACTGTGTCGCTGAAGGCCAAAGACGATTCCAAGCTATACAAGATCAAGGTCTGGTTGAAGAGCTCCCTCGTTTTAGTGTTCTTGTTGGGCTTGACTTGGGCTTTCGGTCTTCTCTACCTAAACCAGCAGACAGTGGTCATGGCTTATGCGTTTACCATCCTGAACTCCCTCCAAGGGTTGGTCATCTTCATATTCCATTGTCTCCAGAATGACAAGTTCCGCAACGAATGCGCTCGTCTGAGTCGTCGCCACCGCTGGCTCTCGTGCTGCTTGTACTGGACGGGGCAGCCCTCGGAGACCCTTCAGCACAACAATGGACCCTCGGGGTCCAGCTCGAACCACGTCGACACGCGCCAGGGCTCCGTCAAGAGCAGGAGGTACCACCAGGCAGCGCCGCCTGACGACGAATTGGACCCCAGAGATGTGACGAACACTTCTTCTAAACACCACGTTGGGAACACTTCAACGCTACCGCATCACGACACTCTCTCCAGGCAACTGGCGCCCCCAAATCATCTCCACAGCCCTTACGAGTGCGAACCGGTGGCTCCTGGCTCACCGCGCCACATGAAAGACGAAGAAAGCCCCCTCCATCATCAAGGATACCAGACCACGCGGAGCTACAACCACGACTTCCGGAACCCCCACGTCTACATGTCCCAGCACTCGCCGGGAAGTCAAGAGATGATTTTTCGGAAGCATTACAAGGACGACCGCAGGAAACACCACCATCACCACGGAAGCCAGAACATGAACCACACGTATTCGGAGATAGCGTCCCAACAGGGCCGGATGTACAGGCGCGGATCCGAACAGGAGTTCCGCGTGATCCAGGACGATCCGGTTTACGAGGAGATAGAGAGAAACGAAACGATGATGTCAGACGTGTCCGACGACAACTCCGGACCGGACTGCAGACAGAATGTAGGTCACCACGGCTCATCTAGCTCCAAGTTTTTTGGGGACCACCGACCGCTGATATCGTACAGCCCAGGCGAGAGGCACCACCACGACCCGGAGCATTACGGGAAGTACGGTAAATGGGACACGTTAGAGCGCTACGATCCGAGGCATTACGAAAGCGGTCGGCTGATGCACCAATACCACCAGCCTCAAGAGAACATGAGGGCGCTTGCGGCCGTCCTCAACGGGGAGAACAACGTCGTCTGCCATTTGGAGCCTCACAATTCTTACGACGTGTACCAGCCTCAGAGCGGCAACCCCAGGACTGTATCCCAGCCCAGTTTCTGA

Protein

MSSEPRYETAYACEGKTLKIGCGEGSVIHLIRANYGRFSITICNDHGNTDWSVNCMSTRSLRVLHSKCSMHQNCSISANTNIFGDPCPNTLKYLEAHYQCVPASTTSTTNRPSPPWLITSPQTVWRSTIAPLPKNPVQTQNERKKPTVITPPTFRPHITLPPEVKLGDIGTKKTTLRQPDTSSEKEPSVSPKDVIPEEKDETPKEVELDQNQRNDNPAIEEDPEPVTEEPPKEDDSDLTVSVNSPPKDKHDILQDLFPTKEIKAIARHAYCPQVTARGLLWNWTLAETYGVQPCPGGATGLARWKCTLTPHYYVGDEKPRRRTGLPSGENFHDLGLDQPVDKHLQLVRRLGSEVLLKGRNGDTPELMVDYRGSSLPDAQASSDNSLINVEQIYTDLVPEWHGASPDLSECRSVWLNNLEARVREGESLLSISNDLAQVTSSKTLYGGDMMTTTSIMKKLAQRMSQNIQSFRDPSQREALVTDMLLGVIKTGSNLLEESQRASWGDLSVEGQNRVASALLTHLEENAFLLADAVSKEKTILQIVKNICLSVRVLEVKNVEDETFPSVIAQEQWKASEDIITIPKAALLDNRQNDLVRIVFFAFDRLEEILPPTFGKTAPHYAPHRSEVGGAPASSTSINSEKEKKNITRLLNSKVISASLGNGRHIQLSQMVKVTMKHLQTENVTNPACVFWDYTLHGWSPEGCEVEWTNSTHTGCACSHLTNFAVLMDVHGVALSAAHELALQTLTYVGCGISTVALSAAMIVFTCFGNTKSDRSLIHKNLCACLLVAEVVFLAGIDKTQNRIFCGIIAGLLHYFFLAAFAWMFLEGFHLYAMLVEVFEPEHPRARWYCACAYLAPALVVLASAAAYPGGYGTAQHCWLSTDRMFIMSFVGPVTLVLLANLICLSMVIYMMCTHSTVSLKAKDDSKLYKIKVWLKSSLVLVFLLGLTWAFGLLYLNQQTVVMAYAFTILNSLQGLVIFIFHCLQNDKFRNECARLSRRHRWLSCCLYWTGQPSETLQHNNGPSGSSSNHVDTRQGSVKSRRYHQAAPPDDELDPRDVTNTSSKHHVGNTSTLPHHDTLSRQLAPPNHLHSPYECEPVAPGSPRHMKDEESPLHHQGYQTTRSYNHDFRNPHVYMSQHSPGSQEMIFRKHYKDDRRKHHHHHGSQNMNHTYSEIASQQGRMYRRGSEQEFRVIQDDPVYEEIERNETMMSDVSDDNSGPDCRQNVGHHGSSSSKFFGDHRPLISYSPGERHHHDPEHYGKYGKWDTLERYDPRHYESGRLMHQYHQPQENMRALAAVLNGENNVVCHLEPHNSYDVYQPQSGNPRTVSQPSF

Similarity

Belongs to the G-protein coupled receptor 2 family.

Uniprot

A0A2A4JQG4 A0A2H1VRT8 A0A0N1PHR4 A0A2J7RHD2 A0A1B6DWT0 A0A023F1F1 + More
A0A336LI91 A0A336LIC2 A0A336LMA6 A0A336LM03

Pubmed

26354079 25474469

EMBL

NWSH01000851 PCG73844.1 ODYU01004050 SOQ43530.1 KQ458565 KPJ05809.1 + More
NEVH01003744 PNF40242.1 GEDC01007165 JAS30133.1 GBBI01003871 JAC14841.1 UFQT01000015 SSX17784.1 SSX17782.1 SSX17783.1 SSX17781.1

Proteomes

UP000218220 UP000053268 UP000235965

Pfam

PF00002   7tm_2        + More
PF02140   Gal_Lectin
PF01825   GPS
PF16489   GAIN
PF00501   AMP-binding

Interpro

IPR000922   Lectin_gal-bd_dom        + More
IPR000832   GPCR_2_secretin-like
IPR036445   GPCR_2_extracell_dom_sf
IPR031240   Latrophilin-2
IPR017981   GPCR_2-like
IPR000203   GPS
IPR032471   GAIN_dom_N
IPR031234   Latrophilin-1
IPR017983   GPCR_2_secretin-like_CS
IPR008077   GPCR_2_brain_angio_inhib
IPR015630   Latrophilin-3
IPR001879   GPCR_2_extracellular_dom
IPR042099   AMP-dep_Synthh-like_sf
IPR000873   AMP-dep_Synth/Lig

Gene 3D

4.10.1240.10 3.40.50.12780

ProteinModelPortal

A0A2A4JQG4 A0A2H1VRT8 A0A0N1PHR4 A0A2J7RHD2 A0A1B6DWT0 A0A023F1F1 + More
A0A336LI91 A0A336LIC2 A0A336LMA6 A0A336LM03

PDB

4DLQ E-value=8.72495e-34, Score=364

KEGG

101743175 K04592 adhesion G protein-coupled receptor L1 | (RefSeq) latrophilin Cirl-like

GO

GO:0007166 GO:0004930 GO:0030246 GO:0016021 GO:0016525 GO:0003824 GO:0007186 GO:0004888 GO:0016020 GO:0000287 GO:0006281 GO:0006259

PANTHER

PTHR12011:SF61 PTHR12011:SF62 PTHR12011:SF60

Length:

1331

Number of predicted TMHs:

6

Exp number of AAs in TMHs:

142.24993

Exp number, first 60 AAs:

0.00097

Total prob of N-in:

0.00143

outside

1 - 744

TMhelix

745 - 767

inside

768 - 802

TMhelix

803 - 825

outside

826 - 844

TMhelix

845 - 867

inside

868 - 887

TMhelix

888 - 910

outside

911 - 931

TMhelix

932 - 954

inside

955 - 960

TMhelix

961 - 983

outside

984 - 1331

Pi

217.435472

Theta

148.464

Tajima's D

1.433726

CLR

0.667517

CSRT

0.764411779411029

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics