SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15960
Pre Gene Modal
BGIBMGA005720
Annotation
PREDICTED:_protein_pangolin?_isoforms_A/H/I/S-like_isoform_X1_[Bombyx_mori]
Transcription factor
Location in the cell
Nuclear   Reliability : 4.879
 

Sequence

CDS
ATGAAGGAGATGAGGGCCAAGGTTGTCGCCGAATGTACCCTAAAGGAGTCGGCGGCCATCAACCAGATATTAGGACGACGGTGGCACTCGTTGAGTCGCGAGGAACAAGCGAAATACTATGAGAAAGCGCGACAGGAGAGACAGCTCCATATGCAGCTGTACCCGGGCTGGAGCGCGCGTGACAACTACGGTTACGGTTCCAAAAAGAAAAAGCGGAAAAAGGACCGCAGTCCCGCTGAGCTGGGAGGGAATAATTTGAAGAAATGCAGAGCGAGGTTCGGCCTCGATCAGCAGAATCAGTGGTGCAAACCTTGCAGGCGGAAGAAAAAGTGCATGCGGTACATGGAAGCACTGGCGGCGGCCGCGTCGGGCGGCGACAACCTCCCCACCCAGTCCCCCTGCTCTGAGGAGGACGTCAAGCTCGAGGAGATGTCGGACGCGTCCAGCGACGAAGCGGACACCGCGCTCAACTCGGCGTCCAGTCCGGGCGGGCTGAGCGCTCTGTCCTCGCTCGCGTCGCCCGCCTCCGAGCCGCCGGCCCGTCACCCGGTAGGTACGAACCCGCGTGACGTCAACAACCCCCTGTCCGTCGGCCAGCTGACGTCACAGAGCTGGCCCCGCGCCGCCCAGCCGCGTCCCACGCACGAGGTCATCTCCGTCTCGTAG
Protein
MKEMRAKVVAECTLKESAAINQILGRRWHSLSREEQAKYYEKARQERQLHMQLYPGWSARDNYGYGSKKKKRKKDRSPAELGGNNLKKCRARFGLDQQNQWCKPCRRKKKCMRYMEALAAAASGGDNLPTQSPCSEEDVKLEEMSDASSDEADTALNSASSPGGLSALSSLASPASEPPARHPVGTNPRDVNNPLSVGQLTSQSWPRAAQPRPTHEVISVS

Summary

Pfam
PF00505   HMG_box        + More
PF08347   CTNNB1_binding
Interpro
IPR009071   HMG_box_dom        + More
IPR036910   HMG_box_dom_sf       
IPR024940   TCF/LEF       
IPR027397   Catenin_binding_dom_sf       
IPR013558   CTNNB1-bd_N       
SUPFAM
SSF47095   SSF47095       
Gene 3D
PDB
2LEF     E-value=2.14734e-26,     Score=292

Ontologies

Topology

Length:
221
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.000800000000000001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.22806
outside
1  -  221
 
 

Population Genetic Test Statistics

Pi
227.653421
Theta
165.422675
Tajima's D
1.138666
CLR
0.043217
CSRT
0.693765311734413
Interpretation
Uncertain
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