SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15950  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA013425
Annotation
PREDICTED:_uncharacterized_protein_LOC101739352_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 4.368
 

Sequence

CDS
ATGAAAACTAAACCCAAAGGCGCCCGTGCCAAAAACATGGATAAGCTCATTGAAGCCGTCCAAGCTAGGGAGTGCCTTTGGGATAAGAGTTACAGAGGCCACAGGAACCGATTCAAGTTGGAACGCTACTGGAATGAGGTGGCGGCTGAGGTGGGCACGTCAAGTTTGAACTGTCGCAAGCGCTGGAAGAATCTCAAAGACCAATGCCGGAAAGAAATGAAGAAGGGACCCGGGGAATCGGAGTGGCCGCATTTTCAGAAACTGAAATTTATTCACCACCAATTCCTGGCTGAAGAGGAGGAGGGCGATGAAGATACCGCCGACGAGGTGTTCAATTCTCTTGACGAGTCCATGAAGAGACCGAAACTAGGATACACGATGAGAAAGAAATTACTGATGAATAAGAGAAGAACGATAGACGTGGACATGAACAAGCTGATTGAGTTGGTCCAGGCCAGAGAAATAATATGGAACAGGCAGTTAAAGGGACACCATAATTGGTATAAGCTGGATGAGTGCTGGAAGGAGGTTTCACAGCAGCTGGAAGTGACGCGTGATGAAGCTAGATTAAAGTGGAAATACCTTCGAGATCAGGCCAGGAAGGAAGTCCGAAAACAAGACTCAGAGTGGGAATTCCTCCCGAAACTTCAATTCTTGACCAACCAGTTCAATGACTATGAAGGCAACGAGATCCCCGAAGATCATTTCAATGACTCCCACGATTATGAGCCCGATCCAGGGACCAGTTACTACAACATTGAACCACCACCGGAGACAGCTCCTGATGTGAGCGTCAAGGAAGATGATTTCGATGAATTTGACACGAAGCCTGTAATAATGGAGGCGGATTTCTACGATGATGACGACGAAGCCCAGAAAAGTACAACAGGAGGAGAGCCACGCGAACCAGCCAAAGATGAGGATATAGGATTTTTCAATAGCTTATTACCGCACGTCAAAAAACTAGGACCAGCAAAAAAGTTAATGCTGAGAATGAAGATTCAAGAACTAGTCTATAATACTGTTTACAATGAACCATAA
Protein
MKTKPKGARAKNMDKLIEAVQARECLWDKSYRGHRNRFKLERYWNEVAAEVGTSSLNCRKRWKNLKDQCRKEMKKGPGESEWPHFQKLKFIHHQFLAEEEEGDEDTADEVFNSLDESMKRPKLGYTMRKKLLMNKRRTIDVDMNKLIELVQAREIIWNRQLKGHHNWYKLDECWKEVSQQLEVTRDEARLKWKYLRDQARKEVRKQDSEWEFLPKLQFLTNQFNDYEGNEIPEDHFNDSHDYEPDPGTSYYNIEPPPETAPDVSVKEDDFDEFDTKPVIMEADFYDDDDEAQKSTTGGEPREPAKDEDIGFFNSLLPHVKKLGPAKKLMLRMKIQELVYNTVYNEP

Summary

Pfam
PF10545   MADF_DNA_bdg        + More
PF02944   BESS
PF16984   Grp7_allergen
Interpro
IPR039353   TF_Adf1        + More
IPR004210   BESS_motif       
IPR006578   MADF-dom       
IPR038602   Mite_allergen_7_sf       
IPR020234   Mite_allergen_group-7       
Gene 3D

Ontologies

Topology

Subcellular location
Nucleus  
Length:
346
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.06912
outside
1  -  346
 
 

Population Genetic Test Statistics

Pi
374.429778
Theta
189.011922
Tajima's D
3.058954
CLR
0.012374
CSRT
0.982200889955502
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
26385322 MKVKVKGARSKNMDKLIAAVQARECLWDKSYRGHRNRFKLERYWNEVAAEVGTTSINCRKRWKNLKDQCRKEMKKNNESEWPHFQKLKFIHHQFLAEEEEGDEDTTDEVFNGLDESIKRPKLGYTMRKKLLMNKRRTIDVDMDKLIELVQAREIIWNRQLKGHHNWYKLDESWKEISQQLGVTRDEARLKWKYLRDQARK 99.71 0.0
26385322 MKTKPKGARAKNMDKLIEAVQARECLWDKSYRGHRNRFKLERYWNEVAAEVGTSSLNCRKRWKNLKDQCRKEMKKGPGESEWPHFQKLKFIHHQFLAEEEEGDEDTADEVFNSLDESMKRPKLGYTMRKKLLMNKRRTIDVDMNKLIELVQAREIIWNRQLKGHHNWYKLDECWKEVSQQLEVTRDEARLKWKYLRDQAR 97.01 4e-117
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