Gene

KWMTBOMO15943

Pre Gene Modal

BGIBMGA013421

Annotation

vrille_[Antheraea_pernyi]

Location

Bomo_Chr27(+):3373021-3382150      View in EpiBrowser

Transcription factor

TF_bZIP

Location in the cell

Nuclear   Reliability : 4.25

CDS

ATGGTTGCCGAGTTCATCCTGAGCCAGCAACAGCTGCTGAGCGCAGGGGCCGGTGCAGCCCTAGGGCCCGCCCCAGTGCAGACCCGCGCTCCTCCACCACCGCGCGCTCGTCTCTCCGTCTCGCCGCATTTCCCGATGGACCAAGCCCCGCCTTCCAACGGCAGCAGCGGCGACAGCCACGACTACGGAGCCTTCGACTTCAAACGCAAAGACTTCTTCGGGCAACGCAAACAACGCGAGTTCATACCGGACAGCAAAAAGGACGACGGCTACTGGGACCGCAGGAGGCGCAACAACGAGGCAGCCAAGCGGTCTCGCGAAAAACGCCGCTTCAACGACATGGTCCTGGAACAGCGCGTCGTCGAACTCTCGAAGGAAAACCACGTCCTCAAAGCACAATTAGACGCCATAAAAGAAAAATACGGAATATGTGGAGAAAGCTTGATAAGCATAGACCAAGTCTTAGCCACCTTGCCAACGTGTGATCAAGTTCTATGTGTGACAAAGAGGAGTAAACTTTCAGGCACAGCCTTGTTTCCGGCCGCTCCTCCTCCGCCCCCGCCGGCTCCACCAGCTTCTCCCCCGTCTCCCCCACCACAACGCGCCCCAGAGCCATACCAAGAAAGGATTCCCGTACCCGAAGCATACTACCCCCACCCTGCCCACTACGAACCACCCGGTTCAGTTCTCAACTTGTCCAGATCTCGACGTGCCCCGTCTCCTTATGAGCTATCTTCCTTATCTGGATCCGGAGACGAGACCGCCGAGCAGTACGCCCCAGAAAACAACTGCCTTCCTTTGAAACTGCGCCACAAATCTCACCTCGGCGACAAGGACGTCGCTAGCGCTCTGCTATCCCTCCAGCACATAAAGCAGGAGCCGGGGCCCAGGTCGTCCCCCTCCTGGGACGGCGAGGGTTCTAGCGACGAGCGCGACTCCGGGATCTCACTAGGAGCAGAATACAGACCGCAACCGGAAAGGCATCCGGAGGAGGAGGACGCGCATTTGAAGGCTGAGCTGGCACGGCTGGCCACAGAGGTGGCGACGCTCAAGAACATGATGCACCAGAACAAAACCCGCGCGCACGAGCACTGA

Protein

MVAEFILSQQQLLSAGAGAALGPAPVQTRAPPPPRARLSVSPHFPMDQAPPSNGSSGDSHDYGAFDFKRKDFFGQRKQREFIPDSKKDDGYWDRRRRNNEAAKRSREKRRFNDMVLEQRVVELSKENHVLKAQLDAIKEKYGICGESLISIDQVLATLPTCDQVLCVTKRSKLSGTALFPAAPPPPPPAPPASPPSPPPQRAPEPYQERIPVPEAYYPHPAHYEPPGSVLNLSRSRRAPSPYELSSLSGSGDETAEQYAPENNCLPLKLRHKSHLGDKDVASALLSLQHIKQEPGPRSSPSWDGEGSSDERDSGISLGAEYRPQPERHPEEEDAHLKAELARLATEVATLKNMMHQNKTRAHEH

Uniprot

H9JV58   Q699T4   A0A0N1I856   A0A0N0P9B0   Q1XD36   A0A2A4JG24   + More
A0A3S2LTK9   A0A2H1VPE1   A0A0L7LW91   A0A212FB12   A0A0B4SXC5   A0A0B4SXR8   A0A0B4SWZ8   A0A0B4SXJ3   A0A0B4SX02   A0A0B4SXR4   A0A0B4SXP9   A0A0B4SY49   A0A0B4SXL7   A0A0B4SXD7   U4UNX2   A0A1B6HEF2   A0A1B6KIK3   K7ING0   A0A310SJK2   A0A154P2D0   A0A0L7R5C1   A0A2A3ELX9   V9ICA8   V9IA22   A0A0J7L319   A0A158NSB1   A0A195CWT6   A0A0M8ZQP5   A0A088A183   N6TIM2   V5G6G3   T1H8P6   E0VHE1   A0A0T6B5M4   A0A026X373   A0A023FAB3   A0A067R9W9   T1GMH3   E2AHN2   E2BJP9  

Pubmed

19121390    26354079    26227816    22118469    23537049    20075255    + More
21347285    20566863    24508170    30249741    25474469    24845553    20798317   

EMBL

BABH01026441    AY526608    AAS92609.1    KQ460448    KPJ14679.1    KQ459572    + More
KPI99591.1    AY576272    AAT86041.1    NWSH01001707    PCG70380.1    RSAL01000012    RVE53525.1    ODYU01003648    SOQ42667.1    JTDY01000013    KOB79426.1    AGBW02009394    OWR50921.1    KM675552    KM675649    AJB84657.1    AJB84682.1    KM675644    KM675645    AJB84678.1    KM675556    KM675640    KM675642    KM675643    AJB84660.1    AJB84676.1    KM675555    KM675557    AJB84659.1    KM675551    KM675648    AJB84656.1    AJB84681.1    KM675639    AJB84673.1    KM675554    AJB84658.1    KM675647    AJB84680.1    KM675646    AJB84679.1    KM675558    KM675637    AJB84662.1    AJB84692.1    KB632399    ERL94812.1    GECU01034725    JAS72981.1    GEBQ01028696    JAT11281.1    KQ764881    OAD54376.1    KQ434792    KZC05494.1    KQ414652    KOC66077.1    KZ288215    PBC32710.1    JR037778    AEY57964.1    JR037777    AEY57963.1    LBMM01000921    KMQ97212.1    ADTU01024726    KQ977171    KYN05131.1    KQ435908    KOX68987.1    APGK01024789    KB740562    ENN80284.1    GALX01002796    JAB65670.1    ACPB03022038    DS235169    EEB12797.1    LJIG01009740    KRT82475.1    KK107019    QOIP01000007    EZA62735.1    RLU20592.1    GBBI01000286    JAC18426.1    KK852791    KDR16467.1    CAQQ02150384    CAQQ02150385    GL439566    EFN67066.1    GL448604    EFN84107.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000218220    UP000283053    UP000037510    + More
UP000007151    UP000030742    UP000002358    UP000076502    UP000053825    UP000242457    UP000036403    UP000005205    UP000078542    UP000053105    UP000005203    UP000019118    UP000015103    UP000009046    UP000053097    UP000279307    UP000027135    UP000015102    UP000000311    UP000008237   

PRIDE

H9JV58   

Pfam

PF07716   bZIP_2        + More
PF02463   SMC_N
PF06470   SMC_hinge

Interpro

IPR004827   bZIP        + More
IPR003395   RecF/RecN/SMC_N       
IPR041741   SMC3_ABC_euk       
IPR036277   SMC_hinge_sf       
IPR001315   CARD       
IPR024704   SMC       
IPR027417   P-loop_NTPase       
IPR010935   SMC_hinge       

SUPFAM

SSF75553   SSF75553        + More
SSF52540   SSF52540       

CDD

cd03272  ABC_SMC3_euk

ProteinModelPortal

H9JV58   Q699T4   A0A0N1I856   A0A0N0P9B0   Q1XD36   A0A2A4JG24   + More
A0A3S2LTK9   A0A2H1VPE1   A0A0L7LW91   A0A212FB12   A0A0B4SXC5   A0A0B4SXR8   A0A0B4SWZ8   A0A0B4SXJ3   A0A0B4SX02   A0A0B4SXR4   A0A0B4SXP9   A0A0B4SY49   A0A0B4SXL7   A0A0B4SXD7   U4UNX2   A0A1B6HEF2   A0A1B6KIK3   K7ING0   A0A310SJK2   A0A154P2D0   A0A0L7R5C1   A0A2A3ELX9   V9ICA8   V9IA22   A0A0J7L319   A0A158NSB1   A0A195CWT6   A0A0M8ZQP5   A0A088A183   N6TIM2   V5G6G3   T1H8P6   E0VHE1   A0A0T6B5M4   A0A026X373   A0A023FAB3   A0A067R9W9   T1GMH3   E2AHN2   E2BJP9  

PDB

6MG3     E-value=0.0623477,     Score=84

KEGG

101738787    K12114 vrille | (RefSeq) nuclear factor interleukin-3-regulated protein

PATHWAY

04711    Circadian rhythm - fly - Bombyx mori (domestic silkworm)

GO

GO:0003700   GO:0005694   GO:0051276   GO:0005524   GO:0042981   GO:0006355   GO:0043565   GO:0006811   GO:0005220   GO:0005783   GO:0006816   GO:0000287   GO:0006281   GO:0006259  

Length:

364

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02062

Exp number, first 60 AAs:

0.02062

Total prob of N-in:

0.00684

outside

1  -  364

 

 

Pi

159.695369

Theta

177.384421

Tajima's D

-0.839401

CLR

339.417164

CSRT

0.167341632918354

Interpretation

Uncertain