Silkworm Genome Informatics Database

Gene

KWMTBOMO15935

Pre Gene Modal

BGIBMGA013385

Annotation

PREDICTED:_uncharacterized_protein_LOC106143478_[Amyelois_transitella]

Location

Bomo_Chr27(-):2634900-2637623 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 2.732

CDS

ATGATAGGTGGCGCCACTGCCACTCCATGCCCGATATGCCACAAAGTTGTGTTCGGGGGCGAAGCCCTAGTGGAACACATGAAGAATACACACAAGGACCCGAACGCGTCCGGCGTTGCCAGTCCTCCTGCGACATCACCGTACCCAGCTCAAACTAAACCTACTGATCCTTATATAGCCAAGCGGCGGACCGCGAACCACCCGTGTCCTGTCTGCGGTAAACATTACGTCAACGAAGGGTCCTTGAGGAAGCATCTGGCCTGTCATCCAGAGACGCAGCTCACCAGCGGCCTGCGCATGTGGCCTTGCTCCGTCTGCCAAGCTGTGTTCACGCACGAAAGCGGACTGCTGTCCCACATGGAGCATATGAGGATGGAGCCTAAGCACCAGTTCGCGGCTCAGTACGTGCTGTCCCGCGCGGCAGCCGAGCGCCGGGAACGAGACATCCTCGCGGCAGTGTCAGCCTCCGCTGGAGGATCCGGCCTCCTCAATCTAGCGCCGCCCTCTCCCGCACACTCAGACTCCTCGTCTAACGGGCGACTGTCTTCATCAGCCGGCTCCGAAGCCGGGGTGGCTGTCAACAAACTCTCAGATTTATTGCGCTCGGCGAACAACGGGCATCAAGCATACGGAGACGAGAGGGTCGCGGCCATCGCAGCGGCCGCAGCGAACATGATGGCGCAGCCCGGGGAGGGGCCGAATGCGGTACAGGTGGCCGCCGCGAACCTCGTGTCGGCCATGAGGCAACAGCTCGCCCGGGAGCCGCCGCCGACGCAGCCCCCCGCTGATAATCCACCCGCGCCATCCGAAGCCGCCCTCAGGATCCAGCAAGCTGAAGCCCTACTGCGGAGTCAGGCCGAGGCGCTGCGACTGGCCGTCTCACAGGCCGCGCAGGCGCAGGCGCAGGTCCACGCCCCTGAGGCCGTCAGTCCCTTGAGACACAACGGAAGATTCCCACCGCAGCCACCGAACGACGCGACTGGGCAGCTGTCCCCAGAGCTGGTCGAGGCGTTCCGGATCGCGCAGGAACAGAGACTGGAGCAGGCGCTGCGGCTGCACGACCCGAGGATGTTGGGCTTCAACCTGCCATCGCCCGTGCAGCAGGCGGCACAGCAGGCGGTCGCGGCACAGCAGGCGGCTGCGGCACAACAAGCCGCGCAGCAAGTCGCACAAGCCGCCCAAGCCGCCCAGGCCGCCCAGGCTGCCCAGGCCGCCCAGGCTGCCCAGGCTGCCCAGGCCGCCCAGGCCGCCCAGCACGCGGCCCAACAAGCCGTCCAACAACAACACATGCAGCAGCAAGCCGCCCAGGCCGCCCAGCAAGCAGCACAACAAGCTGTCCACCTCCAACAGAACCCGCAACCATGA

Protein

MIGGATATPCPICHKVVFGGEALVEHMKNTHKDPNASGVASPPATSPYPAQTKPTDPYIAKRRTANHPCPVCGKHYVNEGSLRKHLACHPETQLTSGLRMWPCSVCQAVFTHESGLLSHMEHMRMEPKHQFAAQYVLSRAAAERRERDILAAVSASAGGSGLLNLAPPSPAHSDSSSNGRLSSSAGSEAGVAVNKLSDLLRSANNGHQAYGDERVAAIAAAAANMMAQPGEGPNAVQVAAANLVSAMRQQLAREPPPTQPPADNPPAPSEAALRIQQAEALLRSQAEALRLAVSQAAQAQAQVHAPEAVSPLRHNGRFPPQPPNDATGQLSPELVEAFRIAQEQRLEQALRLHDPRMLGFNLPSPVQQAAQQAVAAQQAAAAQQAAQQVAQAAQAAQAAQAAQAAQAAQAAQAAQAAQHAAQQAVQQQHMQQQAAQAAQQAAQQAVHLQQNPQP

Uniprot

A0A2H1VFL2 A0A3S2NTR8 A0A0N1IHT4 A0A0N1I4D2 A0A212EUB6 A0A0L7LTL6 + More

Pubmed

26354079 22118469 26227816

EMBL

ODYU01002313 SOQ39650.1 RSAL01000085 RVE48360.1 KQ460448 KPJ14670.1 + More
KQ459572 KPI99582.1 AGBW02012435 OWR45069.1 JTDY01000110 KOB78810.1

Proteomes

UP000283053 UP000053240 UP000053268 UP000007151 UP000037510

Pfam

PF00096 zf-C2H2

Interpro

IPR036236 Znf_C2H2_sf + More
IPR013087 Znf_C2H2_type

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

A0A2H1VFL2 A0A3S2NTR8 A0A0N1IHT4 A0A0N1I4D2 A0A212EUB6 A0A0L7LTL6 + More

PDB

2LV2 E-value=0.0317028, Score=88

KEGG

101741559 no KO assigned | (RefSeq) zinc finger protein 135

GO

GO:0003676 GO:0046872 GO:0003723 GO:0006811 GO:0005220 GO:0005783 GO:0006816 GO:0000287 GO:0006281 GO:0006259

Length:

454

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0251

Exp number, first 60 AAs:

0.00171

Total prob of N-in:

0.00414

outside

1 - 454

Pi

268.34677

Theta

242.657777

Tajima's D

0.25503

CLR

10.03026

CSRT

0.446827658617069

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics