Gene

KWMTBOMO15928  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003469

Annotation

poly_A_binding_protein_[Bombyx_mori]

Location

Bomo_Chr27(-):2266972-2269048      View in EpiBrowser

Full name

Polyadenylate-binding protein      

Location in the cell

Cytoplasmic   Reliability : 2.158

CDS

ATGAATCCTGGTCCACCAAGTTATCCGATGGCATCTCTGTATGTTGGAGATTTACACTCTGATATAACCGAGGCCATGTTGTTTGAAAAATTTTCGACTGCTGGGCCCGTCCTATCTATACGTGTTTGTCGCGATATGATTACCCGTAGATCCTTAGGCTACGCTTATGTTAATTTTCAGCAACCTACGGATGCTGAAAGAGCTTTAGACACCATGAACTTTGATATTATCAAAGGAAGACCCATTAGAATCATGTGGTCCCAACGTGATCCTTCCCTGCGCAAATCTGGAGTTGGGAATGTTTTTATAAAAAACCTTGATAAATCTATTGACAACAAGGCTTTATTTGATACATTCTCAGCGTTTGGGAATATTTTGAGTTGTAAAGTAGCTCAAGATGAGACTGGTGCTTCAAAAGGGTATGGTTTTGTTCATTTTGAAACTGAAGAAGCTGCAAATAAATCTATTGAAAAGGTAAATGGGATGTTGTTAAATGGTAAAATGGTTTATGTAGGCAGATTCATTCCACGCAAAGAGCGCGAAAAGGAACTTGGTGAGAAGGCTAAACTGTTTGCCAATGTGTATGTAAAGAACTTTGGAGAAGACTTTTCTGATGAAATGTTAAAAGATATGTTTGAGAAATATGGTCGCATTACAAGTCACAAAGTTATGTACAAAGATGATGGCAATTCTAGAGGCTTTGGTTTTGTTGCTTTTGAAGACCCAGATGCTGCTGAAAGAGCTTCCATTGAATTGAATGGCAAAGAGCTAGTTGAGGGTAAGCCTCTCTATGTTGGACGTGCACAAAAGAAAGCTGAACGCCAAAAGGAGTTGAAGCGTAAGTTTGAACAACTGAAATCTGAACGCCTAACTCGTTATCAAGGTGTTAATTTGTATGTTAAGAACTTGGATGATACAATTGATGATGAACGTCTGCGCAAAGAATTTGCACCATTTGGGACTATTACGTCTGCGAAGGTAATGCTAGAAGATGGACGTAGTAAAGGCTTTGGGTTTGTTTGTTTTTCTTCTCCTGAAGAAGCTACCAAAGCAGTTACTGAGATGAATGGACGTATTGTAGGAACTAAACCATTGTATGTTGCACTAGCTCAACGCAAGGAGGACCGTAAAGCGCACTTAACATCTCAGTACATGCAGAGAATGGCTAGTATGCGCATGCAGCAAATGGGTCAAATATTCCAGCCTAGTGGTGCAAGTGGATTTTTTGTACCATCGCTCCCTCCAGCACCACGTTACTATGGACCAGCTCAAATGACTCAAATAAGACCTACAACTCCAAGGTGGAATGCACAGCCCCCTGTAAGGCCTAGCACACAAGCAGCATCTGCATATGCAAATATGCAACCCACTTACAGACCAGCACCGAGAGCTCCGGCCCAATCTACAATAAGAACATCGTTAGGAGCAAGACCCATAACTGGACAGCAAGGAATTGCTGCTGCTGCTGCATCTATTCGTCCACCTTTAGTATCTCAAAGCAGTCGCCCAGCCAATTATAAATATACACCAAACATGCGCAACCCACCAGCTCCACAACCAGCAGTGCATATCCAAGGACAAGAACCTCTGACCTCTACTATGCTTGCAGCAGCACCACTCCAGGAACAGAAACAGATGCTTGGGGAACGACTGTTTCCACTTATTCAGAGAATGCACCCTGATTTGGCTGGGAAAATAACTGGTATGCTTTTGGAAATTGATAATTCAGAACTTCTTCATATGTTAGAACATGCAGAGTCTCTGAAAGCTAAAGTAGATGAAGCTGTTGCTGTACTGCAGGCTCATCAAGCTAAACAACAAGCAACTAAAAAAGAATAA

Protein

MNPGPPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALFDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFANVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERASIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTSQYMQRMASMRMQQMGQIFQPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGIAAAAASIRPPLVSQSSRPANYKYTPNMRNPPAPQPAVHIQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVLQAHQAKQQATKKE

Description

Binds the poly(A) tail of mRNA.

Similarity

Belongs to the polyadenylate-binding protein type-1 family.

Uniprot

Q0N2S4   A0A2W1B7S2   A0A2A4JNP3   A0A2H1W6T4   I4DLZ9   I4DII6   + More
A0A194RH12   A0A194PQ29   S4NY68   A0A3G1T181   A0A212FIZ3   A0A0L7KP79   A0A2J7QJ01   A0A2J7QKS7   A0A067REV7   A0A2A3E2F3   V9IIU3   A0A158P240   A0A2A4JM96   A0A1W4XB05   A0A154NZZ8   A0A1W4X096   A0A151IEQ6   A0A1W4X9L5   K7J4C2   A0A1Y1LJP2   A0A232F8M2   A0A139WP55   A0A026VW79   A0A1W4XAT7   A0A1B6C293   E2B282   K7J4C3   K7J4C1   A0A195AW07   A0A0A9XTF5   A0A195AVN5   A0A195FJ12   A0A158P241   A0A151IEM4   A0A195DMD4   F4W6C1   A0A151XCR0   A0A0A9XQF4   A0A195FK67   D6W7F7   F4W6C2   V5G5Q5   E0W4B6   J3JVB3   A0A1Y1NB17   A0A088ASD5   U5EVS1   A0A1D1XE96   A0A1L8DHH2   A0A1L8DHB1   A0A1B0CLG4   A0A336K6T9   T1E7C5   A0A182FTK5   A0A2M3YXC2   A0A2M3ZY95   A0A2M4BH36   W5JFF8   A0A2M4BGV2   Q1HR66   A0A1L8DH66   A0A023EVL3   H9J1T2   A0A182IM26   X1WI92   B0WMK0   A0A1Q3FCL3   A0A182Q873   A0A182NSX0   A0A1B6IGJ5   A0A2H8TQ52   A0A084WLT3   A0A1W7R9X3   A0A1J1HNU4   A0A182RLS8   A0A182YAV4   A0A182WUC9   A0A182VMS8   A0A1S4H5Q0   A0A2C9GRC7   A0A087T5F4   A0A2I9LPG2   A0A0P4WRL4   A0A385L4C5   A0A2L2Y0U4   A0A182P5C9   Q7QH99   A0A0N8ER37   A0A0K8TQ12   A0A0P6HXB6   A0A0N8CG33   A0A0P5ZHV1   J9KAC6   A0A1B6EQV5  

Pubmed

28756777    22651552    26354079    23622113    22118469    26227816    + More
24845553    21347285    20075255    28004739    28648823    18362917    19820115    24508170    30249741    20798317    25401762    26823975    21719571    20566863    22516182    23537049    20920257    23761445    17204158    17510324    24945155    19121390    24438588    25244985    12364791    29248469    26561354    26369729   

EMBL

DQ646407    ABH10797.1    KZ150495    PZC70675.1    NWSH01000990    PCG73204.1    + More
ODYU01006578    SOQ48542.1    AK402317    BAM18939.1    AK401104    BAM17726.1    KQ460207    KPJ16729.1    KQ459597    KPI94844.1    GAIX01013920    JAA78640.1    MG846895    AXY94747.1    AGBW02008321    OWR53699.1    JTDY01007562    KOB65113.1    NEVH01013563    PNF28560.1    NEVH01013256    PNF29191.1    KK852549    KDR21568.1    KZ288425    PBC25923.1    JR046784    AEY60249.1    ADTU01006976    PCG73205.1    KQ434786    KZC05162.1    KQ977858    KYM99295.1    AAZX01006389    AAZX01006683    GEZM01054088    JAV73853.1    NNAY01000718    OXU26809.1    KQ971307    KYB29724.1    KK107790    QOIP01000010    EZA47761.1    RLU18011.1    GEDC01029963    JAS07335.1    GL445067    EFN60208.1    KQ976731    KYM76242.1    GBHO01020638    GBRD01010657    GDHC01004198    JAG22966.1    JAG55167.1    JAQ14431.1    KYM76241.1    KQ981523    KYN40393.1    KYM99294.1    KQ980724    KYN14060.1    GL887707    EGI70256.1    KQ982297    KYQ58171.1    GBHO01020637    GBRD01001909    GDHC01000230    JAG22967.1    JAG63912.1    JAQ18399.1    KYN40394.1    EFA11220.1    EGI70257.1    GALX01003056    JAB65410.1    DS235886    EEB20472.1    APGK01047223    BT127180    KB741077    KB631792    AEE62142.1    ENN74236.1    ERL86135.1    GEZM01010785    JAV93835.1    GANO01000888    JAB58983.1    GDJX01027204    JAT40732.1    GFDF01008284    JAV05800.1    GFDF01008283    JAV05801.1    AJWK01017220    AJWK01017221    UFQS01000128    UFQT01000128    SSX00191.1    SSX20571.1    GAMD01003167    JAA98423.1    GGFM01000161    MBW20912.1    GGFK01000203    MBW33524.1    GGFJ01003120    MBW52261.1    ADMH02001295    ETN63107.1    GGFJ01003121    MBW52262.1    DQ440228    CH477655    ABF18261.1    EAT37709.1    GFDF01008282    JAV05802.1    GAPW01000522    GAPW01000521    JAC13076.1    BABH01008005    BABH01008006    ABLF02016904    DS231998    EDS31071.1    GFDL01009817    JAV25228.1    AXCN02002137    GECU01021667    JAS86039.1    GFXV01004519    MBW16324.1    ATLV01024277    KE525351    KFB51177.1    GFAH01000442    JAV47947.1    CVRI01000011    CRK89202.1    AAAB01008816    APCN01001462    KK113500    KFM60343.1    GFWZ01000291    MBW20281.1    GDRN01041197    JAI67105.1    MH538277    AYA22653.1    IAAA01006564    LAA01816.1    EAA05186.3    GDIQ01002172    JAN92565.1    GDAI01001380    JAI16223.1    GDIQ01028451    JAN66286.1    GDIP01135183    JAL68531.1    GDIP01043332    JAM60383.1    ABLF02010624    ABLF02010625    GECZ01029424    JAS40345.1   

Proteomes

UP000218220    UP000053240    UP000053268    UP000007151    UP000037510    UP000235965    + More
UP000027135    UP000242457    UP000005205    UP000192223    UP000076502    UP000078542    UP000002358    UP000215335    UP000007266    UP000053097    UP000279307    UP000000311    UP000078540    UP000078541    UP000078492    UP000007755    UP000075809    UP000009046    UP000019118    UP000030742    UP000005203    UP000092461    UP000069272    UP000000673    UP000008820    UP000005204    UP000075880    UP000007819    UP000002320    UP000075886    UP000075884    UP000030765    UP000183832    UP000075900    UP000076408    UP000076407    UP000075903    UP000075840    UP000054359    UP000075885    UP000007062   

PRIDE

Q0N2S4    H9J1T2   

Pfam

PF00658   PABP        + More
PF00076   RRM_1

Interpro

IPR000504   RRM_dom        + More
IPR002004   PABP_HYD       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR035979   RBD_domain_sf       
IPR036053   PABP-dom       
IPR003954   RRM_dom_euk       
IPR006515   PABP_1234       
IPR000253   FHA_dom       

SUPFAM

SSF63570   SSF63570        + More
SSF54928   SSF54928       

Gene 3D

3.30.70.330    

ProteinModelPortal

Q0N2S4   A0A2W1B7S2   A0A2A4JNP3   A0A2H1W6T4   I4DLZ9   I4DII6   + More
A0A194RH12   A0A194PQ29   S4NY68   A0A3G1T181   A0A212FIZ3   A0A0L7KP79   A0A2J7QJ01   A0A2J7QKS7   A0A067REV7   A0A2A3E2F3   V9IIU3   A0A158P240   A0A2A4JM96   A0A1W4XB05   A0A154NZZ8   A0A1W4X096   A0A151IEQ6   A0A1W4X9L5   K7J4C2   A0A1Y1LJP2   A0A232F8M2   A0A139WP55   A0A026VW79   A0A1W4XAT7   A0A1B6C293   E2B282   K7J4C3   K7J4C1   A0A195AW07   A0A0A9XTF5   A0A195AVN5   A0A195FJ12   A0A158P241   A0A151IEM4   A0A195DMD4   F4W6C1   A0A151XCR0   A0A0A9XQF4   A0A195FK67   D6W7F7   F4W6C2   V5G5Q5   E0W4B6   J3JVB3   A0A1Y1NB17   A0A088ASD5   U5EVS1   A0A1D1XE96   A0A1L8DHH2   A0A1L8DHB1   A0A1B0CLG4   A0A336K6T9   T1E7C5   A0A182FTK5   A0A2M3YXC2   A0A2M3ZY95   A0A2M4BH36   W5JFF8   A0A2M4BGV2   Q1HR66   A0A1L8DH66   A0A023EVL3   H9J1T2   A0A182IM26   X1WI92   B0WMK0   A0A1Q3FCL3   A0A182Q873   A0A182NSX0   A0A1B6IGJ5   A0A2H8TQ52   A0A084WLT3   A0A1W7R9X3   A0A1J1HNU4   A0A182RLS8   A0A182YAV4   A0A182WUC9   A0A182VMS8   A0A1S4H5Q0   A0A2C9GRC7   A0A087T5F4   A0A2I9LPG2   A0A0P4WRL4   A0A385L4C5   A0A2L2Y0U4   A0A182P5C9   Q7QH99   A0A0N8ER37   A0A0K8TQ12   A0A0P6HXB6   A0A0N8CG33   A0A0P5ZHV1   J9KAC6   A0A1B6EQV5  

PDB

6R5K     E-value=5.75103e-115,     Score=1061

KEGG

778529    K13126 polyadenylate-binding protein | (RefSeq) Pabp, PABPC3; poly A binding protein

PATHWAY

03013    RNA transport - Bombyx mori (domestic silkworm)
03015    mRNA surveillance pathway - Bombyx mori (domestic silkworm)
03018    RNA degradation - Bombyx mori (domestic silkworm)

GO

GO:0003723   GO:0005737   GO:0010494   GO:0005634   GO:0008266   GO:0005829   GO:1990904   GO:0003730   GO:0008143   GO:0016491   GO:0003676   GO:0000166   GO:0006811   GO:0005220   GO:0005783   GO:0006816   GO:0000287   GO:0006281   GO:0006259  

Subcellular location

Cytoplasm  

Length:

612

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01208

Exp number, first 60 AAs:

0.0006

Total prob of N-in:

0.00014

outside

1  -  612

 

 

Pi

332.89918

Theta

154.2202

Tajima's D

3.827825

CLR

0.141371

CSRT

0.9978001099945

Interpretation

Uncertain