Gene

KWMTBOMO15919

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr27(+):2135439-2136260      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.705 Nuclear   Reliability : 1.495

CDS

ATGAACATGGACAAAACAAAAATCACGTACAATGTCCATGTTGCACCCACCATAGTTACTATTGGGAGCTCTACTCTTGAAGTTGTTGACGAATATATATACCTAGGACAGGCAGTCCGATTATGTAGGTCCAACTTTGAGAGAGAGGTCAGTAGACGGATCCAACTCGGCTGGGCAGCGTTCGGTAAACTGCACAACGTCTTCTCGTCCAAAATACCTCAGTGCCTTAAGACAAAGGCGTACAACCGATGTGTGTTACCAGTGATGACTTACGGCTCGGAGACGTGGTGCTTCACTAGGGATCTTTTTAGAAGGCTCAAAGTCGCGCAGCGAGCTATGGAGAGGGCTATGCTCGGCATTTCTCTACGTGATCGAATTCGAAATGAGGAGATCCGTAGAAGAACGAAGGTTGCTGACATAGCCCGTATAATTAGTGAACTGAAGTGGCAATGGGCCGGCCACATAGCACGAAGAGAGGACGGTCAATGGGGCAGAAAGATCCTGGAGTGGCGACCACGTACTGGCAAGCGCAGTGTGGGACGGCCACCTACTAGATGGACCGACGACCTAGTAAAAAGCGCTGGGTCTCGTTGGATGCAGGTGGCAATGGACCGGTCACACTGGAAATCTATTGGAAAGGCCTATGTTCAGCAGTGGACGGCGATAGGCTGA

Protein

MNMDKTKITYNVHVAPTIVTIGSSTLEVVDEYIYLGQAVRLCRSNFEREVSRRIQLGWAAFGKLHNVFSSKIPQCLKTKAYNRCVLPVMTYGSETWCFTRDLFRRLKVAQRAMERAMLGISLRDRIRNEEIRRRTKVADIARIISELKWQWAGHIARREDGQWGRKILEWRPRTGKRSVGRPPTRWTDDLVKSAGSRWMQVAMDRSHWKSIGKAYVQQWTAIG

Uniprot

D7F158   D7F159   A4KWF4   A0A3S2TAR4   A4KWF2   A4KWG0   + More
D7F164   A0A2W1BMB6   D7F157   D7F166   D7F165   D7F160   A0A3S2N4D5   A0A2H1WG43   A0A3S2KX72   A0A2W1BLC9   A0A3S2TRE0   A0A2G8JIM1   W4YXJ1   A0A1E1X2U1   A0A2G8JFM9   A0A131YK20   A0A023EXV2   A0A2G8KFR2   A0A2W1BCS2   E2AL50   A0A2G8K4F2   D7F178   A0A0P4VWD0   D7F176   A0A069DX96   D7F177   A0A023EWU8   A0A0M3HSL8   A0A183UMK8   A0A2G8KKE1   A0A2A4J310   A0A2A4J025   D7F179   A0A016W5P9   A0A016VZE9   A0A016VZ67   A0A016SG46   A0A2G8KAA6   A0A016TK11   A0A016W4R1   A0A069DQ34   A0A016V419   A0A016S6G1   A0A2W1B5F8   A0A016VHV5   A0A016UHF7   A0A2G8KES6   A0A016U3R5   A0A016W591   A0A016TIA8   E3MII9   A0A016WEQ1   E3NMS2   A0A016TNT0   A0A2W1BSQ8   A0A016S5B2   A0A016WA79   A0A2H1VY30   E3NG80   A0A016S795   A0A2W1BDX2   A0A224XSN7   F1LDF6   A0A016TPB0   E3NQY5   A0A016VVN3   E3NNK9   A0A016T7J7   A0A2H2JCJ4   E3NCZ1   A0A2G8L8R5   E3NSE7   A0A2H1V663   E3NBP3   A0A016U784   A0A016S403   E3MW49   E3MYM4   E3N7N4   A0A2W1BZV1   A0A016TS31  

Pubmed

20470440    17360547    28756777    29023486    28503490    26830274    + More
25474469    20798317    27129103    26334808    25730766    21685128   

EMBL

FJ265543    ADI61811.1    FJ265544    ADI61812.1    EF113399    EF113400    + More
ABO45233.1    RSAL01002362    RVE40503.1    EF113398    EF113401    ABO45231.1    EF113402    ABO45239.1    FJ265549    ADI61817.1    KZ150072    PZC74016.1    FJ265542    ADI61810.1    FJ265551    ADI61819.1    FJ265550    ADI61818.1    FJ265545    ADI61813.1    RSAL01000839    RVE41117.1    ODYU01008431    SOQ52031.1    RSAL01002130    RVE40575.1    KZ149985    PZC75698.1    RSAL01000016    RVE53061.1    MRZV01001865    PIK35593.1    AAGJ04144474    GFAC01005640    JAT93548.1    MRZV01002136    PIK34564.1    GEDV01010296    JAP78261.1    GBBI01004876    JAC13836.1    MRZV01000618    PIK46838.1    KZ150485    PZC70710.1    GL440455    EFN65840.1    MRZV01000899    PIK42833.1    FJ265563    ADI61831.1    GDKW01001596    JAI54999.1    FJ265561    ADI61829.1    GBGD01000453    JAC88436.1    FJ265562    ADI61830.1    GBBI01004877    JAC13835.1    UYWY01020264    VDM41049.1    MRZV01000520    PIK48481.1    NWSH01003335    PCG66527.1    NWSH01004509    PCG65028.1    FJ265564    ADI61832.1    JARK01000732    EYC35149.1    JARK01001338    EYC32701.1    EYC32700.1    JARK01001565    EYB89683.1    MRZV01000743    PIK44934.1    JARK01001676    JARK01001446    JARK01001433    EYB83199.1    EYC01126.1    EYC02928.1    JARK01001337    EYC34625.1    GBGD01002934    JAC85955.1    JARK01001354    EYC21986.1    JARK01001626    EYB85834.1    KZ150317    PZC71439.1    JARK01001346    EYC26368.1    JARK01001376    JARK01001370    JARK01001342    EYC14570.1    EYC16380.1    EYC29217.1    MRZV01000640    PIK46507.1    JARK01001396    EYC09581.1    JARK01000807    EYC34984.1    JARK01001434    EYC02684.1    DS268448    EFP02560.1    JARK01000347    EYC38051.1    DS269097    EFP08676.1    JARK01001424    EYC04322.1    KZ149912    PZC78089.1    EYB85833.1    JARK01000460    EYC36749.1    ODYU01004982    SOQ45402.1    DS268650    EFO96957.1    JARK01001621    EYB86109.1    KZ150108    PZC73382.1    GFTR01005437    JAW10989.1    JI178870    ADY48160.1    EYC04323.1    DS269613    EFO86468.1    JARK01001340    EYC30828.1    DS269225    EFP10829.1    JARK01001736    JARK01001462    JARK01001379    EYB80775.1    EYB98943.1    EYC13646.1    EYC33347.1    DS268603    EFO93378.1    MRZV01000169    PIK56634.1    DS269943    EFO90109.1    ODYU01000693    SOQ35892.1    DS268587    EFO92044.1    JARK01001389    EYC11015.1    JARK01001639    EYB85201.1    DS268485    EFP10420.1    DS268497    EFP12149.1    DS268549    EFO89066.1    KZ149907    PZC78256.1    JARK01001415    EYC05859.1   

Proteomes

UP000283053    UP000230750    UP000007110    UP000000311    UP000036681    UP000050794    + More
UP000267007    UP000218220    UP000024635    UP000008281    UP000005237   

PRIDE

D7F158    D7F159    D7F164    D7F157    D7F166    D7F165    + More
D7F160    D7F178    D7F176    D7F177    D7F179   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF13873   Myb_DNA-bind_5
PF01826   TIL
PF13855   LRR_8

Interpro

IPR005135   Endo/exonuclease/phosphatase        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000477   RT_dom       
IPR028002   Myb_DNA-bind_5       
IPR036084   Ser_inhib-like_sf       
IPR002919   TIL_dom       
IPR032675   LRR_dom_sf       
IPR001611   Leu-rich_rpt       
IPR003591   Leu-rich_rpt_typical-subtyp       

SUPFAM

SSF56219   SSF56219        + More
SSF57567   SSF57567       

Gene 3D

3.60.10.10     3.80.10.10    

ProteinModelPortal

D7F158   D7F159   A4KWF4   A0A3S2TAR4   A4KWF2   A4KWG0   + More
D7F164   A0A2W1BMB6   D7F157   D7F166   D7F165   D7F160   A0A3S2N4D5   A0A2H1WG43   A0A3S2KX72   A0A2W1BLC9   A0A3S2TRE0   A0A2G8JIM1   W4YXJ1   A0A1E1X2U1   A0A2G8JFM9   A0A131YK20   A0A023EXV2   A0A2G8KFR2   A0A2W1BCS2   E2AL50   A0A2G8K4F2   D7F178   A0A0P4VWD0   D7F176   A0A069DX96   D7F177   A0A023EWU8   A0A0M3HSL8   A0A183UMK8   A0A2G8KKE1   A0A2A4J310   A0A2A4J025   D7F179   A0A016W5P9   A0A016VZE9   A0A016VZ67   A0A016SG46   A0A2G8KAA6   A0A016TK11   A0A016W4R1   A0A069DQ34   A0A016V419   A0A016S6G1   A0A2W1B5F8   A0A016VHV5   A0A016UHF7   A0A2G8KES6   A0A016U3R5   A0A016W591   A0A016TIA8   E3MII9   A0A016WEQ1   E3NMS2   A0A016TNT0   A0A2W1BSQ8   A0A016S5B2   A0A016WA79   A0A2H1VY30   E3NG80   A0A016S795   A0A2W1BDX2   A0A224XSN7   F1LDF6   A0A016TPB0   E3NQY5   A0A016VVN3   E3NNK9   A0A016T7J7   A0A2H2JCJ4   E3NCZ1   A0A2G8L8R5   E3NSE7   A0A2H1V663   E3NBP3   A0A016U784   A0A016S403   E3MW49   E3MYM4   E3N7N4   A0A2W1BZV1   A0A016TS31  

KEGG

101741607    no KO assigned | (RefSeq) uncharacterized LOC101741607

GO

GO:0004519   GO:0003964  

Length:

223

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.82757

Exp number, first 60 AAs:

0.75605

Total prob of N-in:

0.38513

outside

1  -  223

 

 

Pi

144.147606

Theta

108.195247

Tajima's D

0.782587

CLR

0

CSRT

0.60121993900305

Interpretation

Uncertain