Silkworm Genome Informatics Database

Gene

KWMTBOMO15909

Pre Gene Modal

BGIBMGA013412

Annotation

PREDICTED:_uncharacterized_protein_LOC101740855_[Bombyx_mori]

Location

Bomo_Chr27(+):1829460-1841904 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.902

CDS

ATGCACGCCGTTAACGAAATCATATCCATTTTGGAAAAAATCAATATTACAAAAGAGCTGTTGGAGACCACCAGACTTGGCAAGCACGTGAACGAGTTAAGGCGGAAGACCTCAGACCCGACTCTAGCGCGTCGCGCCAAGGTCCTAGTCAAGAGATGGAGGGACCTTGTCATACCTGTAGCTTCACCGGGGCACACAGGATCAAATCGTTCGTCAGCTGAGCGGCAGATCCGTCGGCTTGGAGGGAACACTCCGCTGACGTCGCCTGCCCTGTCCCGGGTGGCTAGTCCGGCATTGTCCAGTCCAAGACCGTTGTCAAGGCCAGCATGGGGTGGATACGAGTCGGACTCGCAGGACGTGATCCTGGTGGACGACGATCCTCCTCCTCCACCAGCTGTCGTACCGCACAAACCTGTCACACCACCCGTGAAAAGGCCGCCATCCGTCGAAGCGGTATATGATGAGAAAAAAGCGAAGAGAGACAAAAAACCCAAGAAAAAAAGTCGCGCCGGGTCCGGCTCGGAGACCACAGCGGAGCCGGGGTGGGGGGCGCGCAACGGGGCCGCCCCCCACCGCCGGAACGGGACCCGGCCCCCCGACCCCTACGCCGCGCTCGTGCACCGCCTGCCGCCCGCCGGGGGCAAGAAGGTGAAGACAACAAAGGAACTGCTAGAACAGATTCAGTCACGAGGGAAACCCCTCTCCCCCGGCTCCCCGGTGGCCTCCCCGCCCGCCTCGCCTGACGTCATGCTCATTGAACCTGAACCGTGTCCTGTAAAGGTGAGCTCCCCGCTTCGCAACGGTTCATCTCCGGCGCCGGCGGTGACGACCCCGGTCCCCGCCGCGCCCGTTTTCATCTCCGAGATGGAGGAAGAGGGCGTGGAGTGCACGTGCGGGGAGGAGCAAGAGGACGAACACTGTCCGGCGGCGAGCCGGCGGGTCCTGCAGCCGCTGCACGTGCACGCGCTGCACCACACGTACGTGCCCGGCGTCAACGGCACGCGAGCGCCCCCCCTGCCCCACCCCTTCGCGGTGCGGCCCCCCGCCAGACCTGACGACCCCGATCTCTTTACCAGCGTCGTACCCCTGTACAATTACTCAGATTATGCGGACGACTACTGTGTCAAAAACATGTCGCGGGTTCCGATCTGTCCGCACCTACCGTGGACGGAGTTCGCGCCTGCGCCCCCCTCGCCGCCTCCACCCCCGTCGCCCCCTCCGATTCGTCCCTATCCGGTAGACGAGCCGGTGGTGAAGCGGGAGCCGGAAGACCCGGATACCGATCCAGAGGCCGGACTCGACGACCGGCCCGACGGTAAACCTAAACCAGACTCTTCGAAGGTTGAGTCCGAGATGGTTGGCGTCCCGAGCCTCGAGCCAAGCGAGCGGCTCAAGGCGCCGCTGCTCTCCAACGAAGAGGAGACGCAGTTCGGCAAGAACGAGCCTCACCCTCGGATGGAAGTCGAAGAGCAGTTCGAGACTGAACCCCAGGAGCACCGCACCGTCGAGAGAACGAAAGAGGTGAAGCCGGAGAAGAAAGAGGAGACGGTGGACGGGCGGACCCTGGTGGCGCTGTGCTCCCGCGCGCTGGACAGCACGCGCTACGACTACACGCAGATGAGCCGCGCGCCCGTGCTGGCGCTGCCGGAGCACGAGGGCGCGCTGCGGGCGGCGCTGGCGGGCGCGGCGGAGGGCGCGGCGGCGGGCGCGGCGGCGGGCGCGGTGGACGCGCTGGGCCGCCCGCCCCGCCCCGCGCAGTTCGCGGAGTGGCACGAGTGCGCCACGCTGGGCGACGTGCTGGCGCTGCCGTATGTCGTCATCGACTGA

Protein

MHAVNEIISILEKINITKELLETTRLGKHVNELRRKTSDPTLARRAKVLVKRWRDLVIPVASPGHTGSNRSSAERQIRRLGGNTPLTSPALSRVASPALSSPRPLSRPAWGGYESDSQDVILVDDDPPPPPAVVPHKPVTPPVKRPPSVEAVYDEKKAKRDKKPKKKSRAGSGSETTAEPGWGARNGAAPHRRNGTRPPDPYAALVHRLPPAGGKKVKTTKELLEQIQSRGKPLSPGSPVASPPASPDVMLIEPEPCPVKVSSPLRNGSSPAPAVTTPVPAAPVFISEMEEEGVECTCGEEQEDEHCPAASRRVLQPLHVHALHHTYVPGVNGTRAPPLPHPFAVRPPARPDDPDLFTSVVPLYNYSDYADDYCVKNMSRVPICPHLPWTEFAPAPPSPPPPPSPPPIRPYPVDEPVVKREPEDPDTDPEAGLDDRPDGKPKPDSSKVESEMVGVPSLEPSERLKAPLLSNEEETQFGKNEPHPRMEVEEQFETEPQEHRTVERTKEVKPEKKEETVDGRTLVALCSRALDSTRYDYTQMSRAPVLALPEHEGALRAALAGAAEGAAAGAAAGAVDALGRPPRPAQFAEWHECATLGDVLALPYVVID

Uniprot

A0A212FHB3 A0A0N1INX5 A0A0N1IAM1 A0A2H1WFW4

Pubmed

22118469 26354079

EMBL

AGBW02008508 OWR53132.1 KQ460772 KPJ12499.1 KQ458883 KPJ04588.1 + More
ODYU01008335 SOQ51836.1

Proteomes

UP000007151 UP000053240 UP000053268

Pfam

PF08711 Med26

Interpro

IPR017923   TFIIS_N        + More
IPR003617   TFIIS/CRSP70_N_sub
IPR035441   TFIIS/LEDGF_dom_sf

SUPFAM

SSF47676 SSF47676

Gene 3D

1.20.930.10

ProteinModelPortal

A0A212FHB3 A0A0N1INX5 A0A0N1IAM1 A0A2H1WFW4

PDB

5ODD E-value=7.68327e-09, Score=146

KEGG

101740855 K15169 mediator of RNA polymerase II transcription subunit 26 | (RefSeq) uncharacterized LOC10174085

GO

GO:0005634 GO:0015074 GO:0005524 GO:0006468 GO:0004672 GO:0003676 GO:0000287 GO:0006281 GO:0006259

Subcellular location

Nucleus

Length:

608

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01735

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00053

outside

1 - 608

Pi

27.623952

Theta

38.44451

Tajima's D

-1.963601

CLR

3189.784321

CSRT

0.0166991650417479

Interpretation

Possibly Positive selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics