Silkworm Genome Informatics Database

Gene

KWMTBOMO15906

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr27(+):1746890-1754027 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.372 Nuclear Reliability : 1.366

CDS

ATGTTTTACGGGTGCCGCGAACTAAGAAGACTGCACACCGTGTTCCCTTTTCCCACCTTTGCTAAGCAAAGGGTGCGTGAAGAGGGAGAGGGCTCCCTTCTGGAGCCCTCCTGTATGCTAGGCCATGTCCCCGGCGGCTCTCTGGCTGTTAAAGGGGAAGGCCCTCCAGAGGGGGGTACCGGAGGGTACCACCTTAGGTGGAGAATCCCTCCGTGCTTCCACCTCGGTGGGAGCACGCTGCCCCGCGTATTCTGGGGGGGCAAAGAATGCCAAGATGAAGGGGGCTGTGCGACGGGCAGCGGAAAACCCGTCGAACCGAGGTGTGCCAGCGCTGGCTCGACGCGCTCTGCGCTCGTCAGCGACGGCGAGGCAGTTGATCCAAAAGGGACAACCGCCAAGAAGATCAGGCGGAAGAGGAAGTCGTGGCGAGTTTCCTCTCGTGAGGGGGTAGGGGAGCCAGCGTCGTCCTCTGGTGCGGATGCCCCACCGGAGAAAGTGCTGGTAGTCTCCGAAGCGGCCTCTGCTGCGGAGGAGATGCCGCCCCCTAAAGGGAGACCCGCCCGTAGAAGAGGCGCACCGTCACCGGCACCATCATCAGTGTCGATGTCTGTCGCCTCACTAGACGGGCAGACGACGGAGGAGGAAGAGGGTGGTCTTCAGGACCCTGCCTTGGTCATAGACAGGGCCATGAAGACCATCAAATCATATGCGGCCAACGGCACCAAAACCAAAGCTGCTGGCCGAAAACTGCGAGAAGTGGTCTCGCAGGTCTCGAAGGTTCTGCCTTCGGTTGCTTCTGCCAATGACCAGGTAGTACAGCTGATGGCGGAAAATTCGAGGCTTCGAGCACAGCTTCAAGCACAGCAGCAACCCAATGACGGCGCAGCGACGCCTTGGGCTACTGGAGCCCCTCGGGGCCCCCGTCCCCCGGCGCTGACTGGCGACCGATGGCCTGTGCTGCCACCACCGCGTGTGGCACAACAGCGGCCGCGTCTCCCGTCACCGCGCTCTAGGGAGACGTCCGCCGCCGAGCGACGGCGGACACTCGCGGGGCCACGGATGTTGGCTCCGCCAGAACCAGCAAACTTCAGCCTGGACGAGGTCATCAGCCGCACTGTCCAGGCTGTAATAGAAAGGCTGGGCGGCAGGTTGGCAGCTCTCGAGGCGAAAGTCTCGGTCTCGGCTGACACTAGGCGGCCGGCGGTGTCGGGTGCTTTGGCCACTCGTCCTGCTCCCGTACGAGCTCCGGCCACCAAGTCGGGCCCGGGACGGGCTAAAACCAAGCGAGGGGGTGGCGCTATAGCGAATCCTCCACTACAAGCACCCCAGTCCCGTCCACTGCCTCCGCCTCCGTCAAATATGGACGAGGGGTGGAACGTGGTGGCCAGGCGGGGCACCAGAAAGGCCCCACCGGCAGCTCCTCAAATGGGTAGAGCGCCGGCGGCCAAGGCGGCTCAAGCTGCACCCCAACAGGGTCGAGCGTCTGAAGCCGCCAAGAAAAACCAAAAAAAGAAGTTACCGCGCGCGCCTCGGTCGGCAGCAGTGGTTCTTACCCTACTGCCAGCCGCTGAAGCCAAGGGCATGACATACAGAGATGTCATCGCCCGGGCGCGTGCGGCAGTTGACCTGGGCGAGATTGGGGCGGAGGAGGGCCTCCGCTGCAGGCAGACGGCCAACGGGGCCAAGCTGCTAGAATGTCCCGTTGCCGATAGTGCCGGCATCGCGGAGCGTCTGGTGGCGAAGCTCCGTATGGTCCTACCTGAGGAGGAGGTGCGGGTGCACAGGCCGGTGAAAATGGCCGAATTAAGAGTAACCGGCCTGGACGACTGTACCACCAGGGATGAGGTGATGGCGGCTGTCGCTGTCCAGGGCAAATGCGCACTGGAAAATGTAACCGTAGGCGAGCCGCGCCGCGGTTATACCGGGGCCAGCTCGGTGTGCACCAGCTCGGTTGACCGCAGCGGTCTATGTTTCCGCTGCGGCCAACCTGGTCATAAAGCGGCGTCCTGCACGGCCGCCCCGCACTGCGCTCTGTGCGCTGCGGCCGGGCGTAGGGCAAACCACCGGGCGGGAGGCAAGGCTTGCTTCCCGTCCGGTGTTAATACTGAACGCAACCGGCGCCGAAAATCAAGGCGCCGGCAGAAGAGAAGGTTGGCCAGAGGAGCACTGGCCAATGTTGCAATCCCCGCTGCGGCGCCGGTGCCGGAGGGTGGGGGCAGCGGAAACCTGAACCACTCCGCCAGAGCTCAGGACATGCTGTCTCAGAGCATGGTGGAGTGGTCCATAGACGTGGCTGTGGTCGCCGAGCCGTACTTCGTTCCCCCGGCAAATGATTGCTGGTTCGGGGACGATGGCGGCCTGGCGGCCATAGTCATAAGAAGAGACGCGACGATCCCCCCCTTGGCGATGGTGACCAGGGGCCAAGGGTTCGTCGCGGTGCAGCTGGAAGGGACCGTCGTGATCGGGGCGTACTTCTCTCCGAATAGGCCTACTGTCGAGTTCGGGCATTTCCTGGACGGGATCGGGGCGATTGCTCGCCGCCTCGCTCCTCGTCCAGTGATTCTCGCGGGGGACCTCAATGCGAAAGGGTCGGTTGCGACGTGCGTGCGGTGGCAGGGCGAGTCTATTGTGGACGTTACGTTCGCGAGCCCGGCCATCGCGCGCCGTATTCGCGACTGGAGGGTTCTGGAGGGGGCGGAGACGCTGTCAGATCACCGGTATATTCGATTTGATCTCTCCGCCCGCTCCACAGTCGCGGTCGCCTACGGGGACCACCCCCGTGGTGCATCCCGGTCATTCCCCAGGTGGGCACTGAAGCGCTTGAATAAGGCGCTACTGATGGAAGCTTCTACGGTGGCGGCGTGGGCGCCCATGCGTCCACATCCAGTTGAGGTCGAGGACGAAGCGGGGTGGTTCCGGGACACGATGCGTCGCATCTGTGACGTGTCGATGCCCCGGATTAGCCCTCGACCTCCCAATCGCCAAGTGTACTGGTGGTCGCCCGAAATCGCGCAACTCCGTGTGGAGTGCGTTCGGGCGAGGCGCCAGTGTGCGAGGCATCGCCGCCGTCGCCTGCCGCGGCGCAACGATCCGGTGGCGTTCGCGGTGGTAGAGGCCCAGCTGTACGGCGCATTTCGCGTCGCACAGAGGGCGTTGCAGCTGGCCATCAGAAGAGCCAAGGACCAACACATGGAGGGTCTCCTGGAGACGCTGGATGAGGATCCGTGGGGGCGACCCTATCACATGGTGCGCAATAAAATGCGCCCATGGGCCCCCCCAATCACGGAGCGTCTCCAGCCTCAGCAGCTGCGGGACATCGTCTCGGCGCTGTTCCCGCAGGAGCAGGGGGGATTTGTCGCTCCCGCTATGGGCGCGCCGCCGGAATACGACGGCGACGCCCCTGCTGAGGTGCCCCATATAACAGGGGCGGAGCTCCGTGTGGCAGTACGCAAAATGTGCGCAAAGGACACTGCACCTGGCCCGGACGGCGTCCATGGCCGGGTTTGGGCCTTGGCTCTTGGTGCCCTAGGGGACCGACTCTTGAGACTTTATAACTCCTGCCTCGAGTCGGGACGGTTTCCTTCATCGTGGAGGACGGGCAGACTTGTGCTGTTGAGAAAGGAGGGGCGCCCGGCGGATACTGCCGCCGGGTACCGTCCCATCGTGTTGCTGGATGAGGTGGGCAAACTGCTGGAACGCATTCTGGCAGCCCGCATCATCCAGCATCTGCTCGGGGTGGGACCCGATCTGTCGGCGGAGCAGTATGGCTTCCGAGAGGGCCGCTCAACGGTGGACGCGATCCTTCGCGTGCGGGCCCTCTCGGAGGAGGCCGTCTGCGGGGGTGGGGTGGCCTTGGCGGTGTCGCTCGACATCGCCAATGCGTTTAACACCCTGCCCTGGTCCGTGATAGGGGGGGCGCTGGAAAGACACGGAGTGCCCCTCTACCTTCGCCGGCTGGTCGGCTCCTACTTGGAGGACAGATCGGTCACGTGTACCGGACACGGTGGGGTCGTGCATCGGTTCCCGGTCGTGCGCGGTGTTCCACAGGGGTCGGTACTCGGCCCTCTTTTGTGGAATATCGGGTATGACTGGGTGCTGAGGGGTGCCCTCCTCCCGGGCCTAAGCGTAATCTGTTACGCAGACGACACGCTGGTCGTGGCCCGGGGAGGGAGCTTTGCTGAGTCTGCTCGTCTTGCCACCGCTGGGGTAGCGCATGTCGTCGGCAAAATCAGGAGATTGGGCCTCGACGTGGCGCTCAGTAAATCCGAGGCCATGTGGTTCCACAGGCCCCGGAGAGTGCCACCTGTCGATGCCCATATCGTGGTTGGAGGCGTCCGGATCGGGGTCGGGGTGCAGTTAAAGTACCTCGGCCTCATTCTGGACAGTCGTTGGACCTTCCGTGCTCATTTTCAGCACCTGGTCCCTCGTTTGTTGGGGGTGGCCGGCGCGTTAAGCCGGCTTCTTCCCAACATCGGGGGGCCTGACCAGGTGACGCGCCGTCTCTATACGGGGGTGGTGCGGTCAATGGCCTTATACGGGGCACCCGTGTGGGGCCAGTCCCTGGCCGTGGGGGTAGCGAAGTTGCTGCAACGGCCGCAACGCACCATCGCGGTCAGGGTCATCCGTGGTTATCGCACCATCTCTTTTGAGGCGGCGTGTGTACTGGCTGGGACGCCGCCTTGGGTCCTGGAGGCGGAGGCGCTCGCTGCTGACTATCAGTGGCGGGCTAACCTTCGTGCCCGGGGCGTGGCGCGTCCCAGCCCCAGTGTGGTCAGAGCGCGGAGGGCCCAATCTCGGCGGTCCGTGCTGGAGTCATGGTCCAGACGGCTGGCTGATCCTTCGGCTGGTCGTAGGACCGTCGAGGCGATTCGCCCGATTCTTGTGGATTGGGTGAATCGTGACAGAGGACGCCTCACTTTCCGGCTCACGCAGGTGCTCACTGGGCATGGTTGCTTCGGTGAGTTCCTGCACCGGATCGGAGCCGAGCCGACGGCAGGGTGTTACCATTGTGGTTGCGACTTGGATACGGCGGAGCACACGCTCGTTGCCTGCCCCGCATGGGAGGGGTGGCGCCGTGTCCTCGTCGCGAAAATAGGAAACGACTTGTCGTTGCCGAGTGTTGTGGCATCGATGCTCGGCGACGACGAGTCGTGGAAGGCGATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGCGTGAGAGACGCACAAGCCCGCCGCCGTCGAGCGGGGGCCAGGGAGGCGGATCTCGCCCAAGCCCTGGCCCTCTAA

Protein

MFYGCRELRRLHTVFPFPTFAKQRVREEGEGSLLEPSCMLGHVPGGSLAVKGEGPPEGGTGGYHLRWRIPPCFHLGGSTLPRVFWGGKECQDEGGCATGSGKPVEPRCASAGSTRSALVSDGEAVDPKGTTAKKIRRKRKSWRVSSREGVGEPASSSGADAPPEKVLVVSEAASAAEEMPPPKGRPARRRGAPSPAPSSVSMSVASLDGQTTEEEEGGLQDPALVIDRAMKTIKSYAANGTKTKAAGRKLREVVSQVSKVLPSVASANDQVVQLMAENSRLRAQLQAQQQPNDGAATPWATGAPRGPRPPALTGDRWPVLPPPRVAQQRPRLPSPRSRETSAAERRRTLAGPRMLAPPEPANFSLDEVISRTVQAVIERLGGRLAALEAKVSVSADTRRPAVSGALATRPAPVRAPATKSGPGRAKTKRGGGAIANPPLQAPQSRPLPPPPSNMDEGWNVVARRGTRKAPPAAPQMGRAPAAKAAQAAPQQGRASEAAKKNQKKKLPRAPRSAAVVLTLLPAAEAKGMTYRDVIARARAAVDLGEIGAEEGLRCRQTANGAKLLECPVADSAGIAERLVAKLRMVLPEEEVRVHRPVKMAELRVTGLDDCTTRDEVMAAVAVQGKCALENVTVGEPRRGYTGASSVCTSSVDRSGLCFRCGQPGHKAASCTAAPHCALCAAAGRRANHRAGGKACFPSGVNTERNRRRKSRRRQKRRLARGALANVAIPAAAPVPEGGGSGNLNHSARAQDMLSQSMVEWSIDVAVVAEPYFVPPANDCWFGDDGGLAAIVIRRDATIPPLAMVTRGQGFVAVQLEGTVVIGAYFSPNRPTVEFGHFLDGIGAIARRLAPRPVILAGDLNAKGSVATCVRWQGESIVDVTFASPAIARRIRDWRVLEGAETLSDHRYIRFDLSARSTVAVAYGDHPRGASRSFPRWALKRLNKALLMEASTVAAWAPMRPHPVEVEDEAGWFRDTMRRICDVSMPRISPRPPNRQVYWWSPEIAQLRVECVRARRQCARHRRRRLPRRNDPVAFAVVEAQLYGAFRVAQRALQLAIRRAKDQHMEGLLETLDEDPWGRPYHMVRNKMRPWAPPITERLQPQQLRDIVSALFPQEQGGFVAPAMGAPPEYDGDAPAEVPHITGAELRVAVRKMCAKDTAPGPDGVHGRVWALALGALGDRLLRLYNSCLESGRFPSSWRTGRLVLLRKEGRPADTAAGYRPIVLLDEVGKLLERILAARIIQHLLGVGPDLSAEQYGFREGRSTVDAILRVRALSEEAVCGGGVALAVSLDIANAFNTLPWSVIGGALERHGVPLYLRRLVGSYLEDRSVTCTGHGGVVHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLSVICYADDTLVVARGGSFAESARLATAGVAHVVGKIRRLGLDVALSKSEAMWFHRPRRVPPVDAHIVVGGVRIGVGVQLKYLGLILDSRWTFRAHFQHLVPRLLGVAGALSRLLPNIGGPDQVTRRLYTGVVRSMALYGAPVWGQSLAVGVAKLLQRPQRTIAVRVIRGYRTISFEAACVLAGTPPWVLEAEALAADYQWRANLRARGVARPSPSVVRARRAQSRRSVLESWSRRLADPSAGRRTVEAIRPILVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRIGAEPTAGCYHCGCDLDTAEHTLVACPAWEGWRRVLVAKIGNDLSLPSVVASMLGDDESWKAMLDFCECTISQKEAAGRVRDAQARRRRAGAREADLAQALAL

Uniprot

NA

ProteinModelPortal

NA

PDB

6AR3 E-value=0.000106984, Score=115

KEGG

105841773 no KO assigned | (RefSeq) serine/arginine repetitive matrix protein 1-like

GO

GO:0003676 GO:0008270 GO:0004674 GO:0005524 GO:0006468 GO:0004672 GO:0000287 GO:0006281 GO:0006259

Length:

1761

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.14733

Exp number, first 60 AAs:

0.0002

Total prob of N-in:

0.00007

outside

1 - 1761

Pi

19.98998

Theta

143.246244

Tajima's D

0

CLR

30.086978

CSRT

0.371781410929454

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree