Gene

KWMTBOMO15878  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013369

Annotation

PREDICTED:_vinculin_[Bombyx_mori]

Location

Bomo_Chr27(+):617842-622445      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.286 Mitochondrial   Reliability : 1.411 Nuclear   Reliability : 1.507

CDS

ATGAATTACAGGTCTGGGGGCTACAACGCGGACCAGCTGTGCGACGAGCGCCAGGCCGGTCGCGGCCGGGACCACAAGGCTTTGAAGCTAGCTGCAGAGTTGGGCACGCAACTCAACGAGCTGGAAGGAACCGTCAACGAGGGCGTGAGGGCTGTGGAGAAGCAGGGAGGGAGGACCATGCAGGCCAGACTGGAAACGGCCCACAAATGGCTTCTCCACCCGGCTGCGGATGCGGTCACCAGGGTTGAAGGCCAAAAGGCGATCAACAGCATCGTCTCGCAAGGCCAGAGGATCGCGGACGGGCTGCAGGGTCGCGAGAAGGCGGAGGTGCTGCAGCAGTGCGGCGAGGTGCAGCGGCTGGCGGACCGCCTGGCCGAGCTGTGCGCCGCGGGCCGGGGGGACTCCGACGAGGCCAGGGCCCTCACCAGGGAGCTGACGGACAAGCTGCACGCGCTGCGCGGCGCCACGGAGCGCGCCGTGGTCAACCGCGTGGTCGAGGAGTTCATCGACGTCGCCGCGCCGCTGCGGCACTACAGCGACGCCGTCGCCGCGCCGCCCGGTCAGTACCCGCACCTCCGCTGTGTCATTGTTCTGTGA

Protein

MNYRSGGYNADQLCDERQAGRGRDHKALKLAAELGTQLNELEGTVNEGVRAVEKQGGRTMQARLETAHKWLLHPAADAVTRVEGQKAINSIVSQGQRIADGLQGREKAEVLQQCGEVQRLADRLAELCAAGRGDSDEARALTRELTDKLHALRGATERAVVNRVVEEFIDVAAPLRHYSDAVAAPPGQYPHLRCVIVL

Uniprot

H9JV06   A0A2H1VC97   A0A2A4JNP8   A0A1E1W0V8   A0A3S2TTN0   A0A0N0PCQ9   + More
A0A194PP83   A0A212FNK3   A0A139WGG5   A0A139WG82   V5GV37   A0A139WGG1   A0A139WG62   A0A139WGA5   A0A139WGJ4   U5EZL2   N6UAG2   A0A1J1HT91   A0A1B0CGY0   E2BTN6   A0A1L8E3V2   A0A0J7KY03   A0A195EWY0   E2ACE9   A0A067QS50   A0A195BB10   A0A2M4BCB1   A0A158NN08   F4WTB1   A0A151JBF5   A0A151WUQ8   A0A2M4A655   K7IMW4   A0A2J7RNG9   W5JGR3   A0A232FDY0   A0A2M3Z6A1   A0A182FG03   A0A182Q5G7   A0A182RNF3   A0A182SU74   T1J8S2   A0A084WNF9   A0A195C5N0   A0A182XZ03   A0A182NHR3   A0A1Q3FB41   A0A182PQA9   A0A154PH15   A0A182WJ44   A0A182IJR2   A0A026WMK2   E0VRD8   A0A2D3E2W8   A0A0P4WR17   A0A182JNC5   A0A182X3L7   Q7QJI4   A0A182I3F2   A0A182U7M2   A0A182VMB9   A0A0P4WJ01   A0A0P4W6D5   A0A0N7ZCC0   A0A182LRR4   Q178I1   A0A0L7QQY5   A0A182HA48   A0A023EWN7   T1JBN5   A0A336M9K2   A0A336MF54   B0X394   A0A1B6L0M2   A0A1B6LZ15   A0A1B6L1N3   A0A1B6LCX9   A0A1B6K8G4   T1GS06   A0A0N0BK13   A0A336MYC4   A0A2P8YR19   A0A1B6ERX3   A0A1B6G3E0   A0A3L8DJC6   A0A293N0R4   A0A3Q0J0S0   T1HKY3   A0A0P4VGZ5   B4L5U0   A0A0Q9XNY7   A0A3B0JTC8   A0A069DWV1   A0A2R5LHL7   A0A0P5IJJ0   Q29JL3   A0A210PYW2   B4JJ77   A0A0P5H887  

Pubmed

19121390    26354079    22118469    18362917    19820115    23537049    + More
20798317    24845553    21347285    21719571    20075255    20920257    23761445    28648823    24438588    25244985    24508170    20566863    12364791    14747013    17210077    17510324    26483478    24945155    29403074    30249741    27129103    17994087    18057021    26334808    15632085    23185243    28812685   

EMBL

BABH01037485    BABH01037486    BABH01037487    ODYU01001771    SOQ38435.1    NWSH01000974    + More
PCG73338.1    GDQN01010424    JAT80630.1    RSAL01000002    RVE54937.1    KQ460466    KPJ14608.1    KQ459597    KPI95246.1    AGBW02005352    OWR55289.1    KQ971346    KYB26984.1    KYB26983.1    GALX01000467    JAB67999.1    KYB26979.1    KYB26980.1    KYB26982.1    KYB26981.1    GANO01000589    JAB59282.1    APGK01036673    KB740941    KB632225    ENN77621.1    ERL90247.1    CVRI01000020    CRK91221.1    AJWK01011708    GL450467    EFN80951.1    GFDF01000780    JAV13304.1    LBMM01002163    KMQ95196.1    KQ981940    KYN32733.1    GL438494    EFN68888.1    KK852996    KDR12694.1    KQ976529    KYM81736.1    GGFJ01001548    MBW50689.1    ADTU01020808    ADTU01020809    GL888334    EGI62574.1    KQ979147    KYN22447.1    KQ982721    KYQ51650.1    GGFK01002938    MBW36259.1    NEVH01002541    PNF42368.1    ADMH02001234    ETN63552.1    NNAY01000352    OXU28986.1    GGFM01003306    MBW24057.1    AXCN02000376    JH431963    ATLV01024599    KE525352    KFB51753.1    KQ978231    KYM96152.1    GFDL01010278    JAV24767.1    KQ434902    KZC11176.1    KK107152    EZA57138.1    DS235465    EEB15944.1    MF140475    ATU31740.1    GDRN01069570    JAI64022.1    AAAB01008807    EAA04738.1    APCN01000207    GDRN01069569    JAI64023.1    GDRN01069573    JAI64020.1    GDRN01069568    JAI64024.1    AXCM01010044    CH477363    EAT42601.1    KQ414785    KOC60974.1    JXUM01122085    KQ566568    KXJ70027.1    GAPW01000126    JAC13472.1    JH432016    UFQS01000750    UFQT01000750    SSX06609.1    SSX26956.1    SSX06610.1    SSX26957.1    DS232311    EDS39596.1    GEBQ01022806    JAT17171.1    GEBQ01011051    JAT28926.1    GEBQ01022533    JAT17444.1    GEBQ01018436    JAT21541.1    GEBQ01032255    JAT07722.1    CAQQ02086186    KQ435710    KOX79918.1    UFQT01001504    SSX30858.1    PYGN01000419    PSN46699.1    GECZ01029034    GECZ01018276    GECZ01016277    GECZ01014322    GECZ01013789    GECZ01013540    GECZ01000202    JAS40735.1    JAS51493.1    JAS53492.1    JAS55447.1    JAS55980.1    JAS56229.1    JAS69567.1    GECZ01012946    JAS56823.1    QOIP01000007    RLU20520.1    GFWV01021040    MAA45768.1    ACPB03014658    ACPB03014659    GDKW01002943    JAI53652.1    CH933811    EDW06549.1    KRG07011.1    KRG07012.1    OUUW01000003    SPP78720.1    GBGD01000346    JAC88543.1    GGLE01004888    MBY09014.1    GDIQ01213441    JAK38284.1    CH379063    EAL32288.2    KRT05813.1    NEDP02005373    OWF41671.1    CH916370    EDV99629.1    GDIQ01231478    JAK20247.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053240    UP000053268    UP000007151    + More
UP000007266    UP000019118    UP000030742    UP000183832    UP000092461    UP000008237    UP000036403    UP000078541    UP000000311    UP000027135    UP000078540    UP000005205    UP000007755    UP000078492    UP000075809    UP000002358    UP000235965    UP000000673    UP000215335    UP000069272    UP000075886    UP000075900    UP000075901    UP000030765    UP000078542    UP000076408    UP000075884    UP000075885    UP000076502    UP000075920    UP000075880    UP000053097    UP000009046    UP000075881    UP000076407    UP000007062    UP000075840    UP000075902    UP000075903    UP000075883    UP000008820    UP000053825    UP000069940    UP000249989    UP000002320    UP000015102    UP000053105    UP000245037    UP000279307    UP000079169    UP000015103    UP000009192    UP000268350    UP000001819    UP000242188    UP000001070   

PRIDE

H9JV06   

Pfam

PF01044   Vinculin        + More
PF01490   Aa_trans
PF00147   Fibrinogen_C

Interpro

IPR006077   Vinculin/catenin        + More
IPR036723   Alpha-catenin/vinculin-like_sf       
IPR017997   Vinculin       
IPR000633   Vinculin_CS       
IPR003323   OTU_dom       
IPR038765   Papain-like_cys_pep_sf       
IPR013057   AA_transpt_TM       
IPR036056   Fibrinogen-like_C       
IPR014716   Fibrinogen_a/b/g_C_1       
IPR002181   Fibrinogen_a/b/g_C_dom       

SUPFAM

SSF47220   SSF47220        + More
SSF54001   SSF54001       
SSF56496   SSF56496       

Gene 3D

3.90.215.10    

ProteinModelPortal

H9JV06   A0A2H1VC97   A0A2A4JNP8   A0A1E1W0V8   A0A3S2TTN0   A0A0N0PCQ9   + More
A0A194PP83   A0A212FNK3   A0A139WGG5   A0A139WG82   V5GV37   A0A139WGG1   A0A139WG62   A0A139WGA5   A0A139WGJ4   U5EZL2   N6UAG2   A0A1J1HT91   A0A1B0CGY0   E2BTN6   A0A1L8E3V2   A0A0J7KY03   A0A195EWY0   E2ACE9   A0A067QS50   A0A195BB10   A0A2M4BCB1   A0A158NN08   F4WTB1   A0A151JBF5   A0A151WUQ8   A0A2M4A655   K7IMW4   A0A2J7RNG9   W5JGR3   A0A232FDY0   A0A2M3Z6A1   A0A182FG03   A0A182Q5G7   A0A182RNF3   A0A182SU74   T1J8S2   A0A084WNF9   A0A195C5N0   A0A182XZ03   A0A182NHR3   A0A1Q3FB41   A0A182PQA9   A0A154PH15   A0A182WJ44   A0A182IJR2   A0A026WMK2   E0VRD8   A0A2D3E2W8   A0A0P4WR17   A0A182JNC5   A0A182X3L7   Q7QJI4   A0A182I3F2   A0A182U7M2   A0A182VMB9   A0A0P4WJ01   A0A0P4W6D5   A0A0N7ZCC0   A0A182LRR4   Q178I1   A0A0L7QQY5   A0A182HA48   A0A023EWN7   T1JBN5   A0A336M9K2   A0A336MF54   B0X394   A0A1B6L0M2   A0A1B6LZ15   A0A1B6L1N3   A0A1B6LCX9   A0A1B6K8G4   T1GS06   A0A0N0BK13   A0A336MYC4   A0A2P8YR19   A0A1B6ERX3   A0A1B6G3E0   A0A3L8DJC6   A0A293N0R4   A0A3Q0J0S0   T1HKY3   A0A0P4VGZ5   B4L5U0   A0A0Q9XNY7   A0A3B0JTC8   A0A069DWV1   A0A2R5LHL7   A0A0P5IJJ0   Q29JL3   A0A210PYW2   B4JJ77   A0A0P5H887  

PDB

6FUY     E-value=3.26144e-19,     Score=230

KEGG

101736001    K05700 vinculin | (RefSeq) vinculin

GO

GO:0051015   GO:0007155   GO:0005198   GO:0015629   GO:0016021   GO:0098592   GO:0004965   GO:0005891   GO:0043565   GO:0003677   GO:0003707   GO:0006281   GO:0006259  

PANTHER

PTHR46180  

Length:

198

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.19777

outside

1  -  198

 

 

Pi

309.758601

Theta

201.50548

Tajima's D

1.699357

CLR

0.118843

CSRT

0.830658467076646

Interpretation

Uncertain