SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15876
Pre Gene Modal
BGIBMGA013368
Annotation
PREDICTED:_gamma-aminobutyric_acid_type_B_receptor_subunit_2_[Bombyx_mori]
Location
Bomo_Chr27(+):546142-582889      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 2.147 PlasmaMembrane   Reliability : 1.883
 

Sequence

CDS
ATGAAGATGCTTCTCATATTGCTGGTTGTGGTGGCGGTCTGTCGAGGTGTACCTCAGAAGCCGAACCTGGACGCGATACTTAACCGAAGAACCGACGTATACATAGCTGGTTTCTTTCCATTCGGTAAAGGAGTAGAGAATTCCAATACTGGGCGCGGTGTGATGCCGAGTGTGAAGCTAGCCCTGGATCACGTCAACGAACACGACTCGGTGCTGAGGAACTACCGGCTTCACATGTGGTGGAATGACACGGAGTGTAACGCGGCAGTAGGTGTGAAGTCGTTTTTCGACATGATGCACAGCGGTCCTCACAAGCTGATGCTTTTTGGAGCCGCTTGCACGCACGTCACCGATCCCATAGCGAAGGCTTCTAAGCACTGGCATCTTACACAGCTTTCTTACGCCGACACCCACCCGATGTTCACAAGAGAGGCTTTTCCAAATTTCTTCCGCATCGTGCCTTCAGAGAACGCATTCAATTTGCCCCGGATCAGACTACTGCAACACTTCAACTGGACCAGGGTTGGGACTATTTATCAGAACGAACCAAGATATGCTTTGGCTCACAATCGACTACTGGCTGATTTGGACACCCACGGATTCCTGATTGAAGAAACTCAGAGCTTCGCCACTGAAGTAAAAACCGCGTTGGCCAAGCTTAAAGAGAAAGACGTCAGAGTCATTCTTGGAAACTTCAATGAAACCTGGGCCCTGAAGATATTCTGTGAAGCCTACAAACTTGAAATGTTTGGTCGAGCTTACTCCTGGCTCCTGCTGGGGACCTACAGTAACAGCTGGTGGACGCGACGGGCACCTTGTTCCCGCCGGAACTTGACTGCCGCCCTTGACACCGCCATTCTCACGGATCTGCTGCCACTGTCCACCACCCAGGAGACCACCGTTTCTGGCATTACGGCGAAAGACTATCAAGTGGAGTATGACAGGAGACGAGGAATGGAATACTCGAGATTTCACGGCTACACCTACGATGGTATATGGGCGATGGCACTAGCGATACAGACGGTGGCACAACGAGTAAAGCTGAGGAATAAGGAGAAGACAGTGCAGGACTTCCGCTACAGAGACAAGGAGTGGGAGCAGTTGTTCCTGGATGCGCTTAGTAATGTGACATTCGAAGGAGTCACCGGTCCAGTCCGGTTCTATGACAACGAACGCAAAGCCTCTATTCTATTGAAGCAGTTCCAAGGTGATGAAGTAGGGGAAGTGAAGGTGGGGGAGTATTGTGCTGAGAGAGATCATCTGGACCTGACTAGTTGGGAGTCATTCAAATGGCTGGGCAAGAATCCTCCGAAAGACCGAACGCTGCGGCTCATAGAGCACACCCAAGTGAACATCACTATTTACTCTATCTTGGTCTCCTGCTCCGTGCTGGGTATACTCCTAGCCACCGGCTTCCTCGCTATGAACATACATTACAGGAATCAGAGGTACATAAAGATGTCTTCACCGCATTTGAACAATCTCATCATCGTGGGCTGCATGCTCACCTACCTGAGCGTGATCTTCCTCGGCTTGGACTCCAGCCTCAGCAGCATCGCTGCCTTTCCCTACATTTGCACCGCCAGAGCTTGGCTACTAATGGCCGGTTTTAGTCTCGCTTTCGGAGCCATGTTCTCAAAGACTTGGCGGGTCCACTCCATCTTCACTGACGTCAAGCTAAATAAGAAGGTCATTAAAGATTATCAGCTCTTCATGGTCGTGGGAGTGCTTCTCTGCATCGACTTGGCAATAATGACGACTTGGCAGATATCTGATCCTTTTTACAGAGCAACGAAACAGATGGATCCTTACCCTCACCCTTCGAGCGAGGACATCGTGATAGTTCAAGAGAACGAATACTGTCAATCAGAACGGATGCCGATCTTCATTGGAGTCATTTACGCTTACAAGGGCTTGCTGCTGGTATTCGGAGCGTTCCTGGCGTGGGAGACCCGTCATGTCTCTATACCAGCCCTGAACGACTCTCAACACATCGGCTTATCTGTTTACAACGTACTCATCATGTGTATTATGGGCGCAGCTATTACTTTGGTGCTAGCTGACCACAAAGATGCCTTGTTTGTATTAATTGGCATCTTCATAATTTTTTGTACGACGGGAACTCTCTGTTTGGTGTTCGTACCGAAGTTGTTGGAGCTTCGCCGTAACGGTCAAGGCGGGGCGGGGGCGGGACGCATCCGTGCCACACTGCGACCTGCCTCAGGGCACGAGTGCCGCTCGCCCGGACCCGAGCTGGAGAGGCGCCTCAAGGAGCTGAGACAGTACAACAACCGCTACAGGCGGACGTTGCAGGCCAAGGAGAATGAGCTTCAGATGCTACTCAGTAAGCTTGGCAGTGACGTCACTTCGGAATCGTCCACACGCGGAGACTCTCGGTCGCCGGCAACTCAGCGCATAAAGCTGCCCATACCGAAGGAGAATATTAGCCACCCTGAAACAAGCGACATCACGTCTGTGTGCAGTCTGAGCGCCTCAGCTGGCGCGGAAACTGAATACATCAATCTGCAGCCACAACAATCTATCGAGAAACCAAGGCCTTCAGCTCCTCCTGAGCCAATCAAAGACCTAACACCCAAAGAGCCAAAGAAGGAGCAGACGAAAAATGTGTCTTTCAAGAATCATCTGGATTACACCAGTCCTCCGCCTACATCCAAAGCTGTCCCGGAGAAAGATCAGCTCGCGAAATTGCCGTATGGTTGGTCTTCTGAAGTTCGGGAACCATTAGGGCCGGCATTAAAAACATCTAAAACTCCGGAGCCAGCTAAAGCTGAAGCTAAAACCGTACCGGCTCTGAAAAGCAACGACACCCCGCCAGCGATGTCTGTGCCAGCGAAAATCCAGGAGCCGATGTATACCAAGGCAGCCACACCGAAGATCAATAAGACGCCAGAACTTCAAAAGAAAGCTGCTCAAGACTCGGTGTCGACCAAAACAACTCCATCTCGGGAACACAAGCCCGCTAGAGGACATAGACGTATGTCCAGCCTCAGCCAGAGTGCTCTCCTCACTGACCTCATGCATGTCTCCGTGGACCAGGATGATACAGAACCGCCCCCTGGTCTTGAAAGGAAGGTTATAGGTCAAGAAAGAGATCCTCCACCACCTCCAATTGCGAAACCCAAGCAAGAACCGGAAGATATTCTGGACGTAGACCATGATTATTCTTCAATGGAAAGAAGGAAATCTTGCCAAAGAAGAGACTCGGAGAAAAGAAAAAAAGAGAACTTCATAGTAGTCCAGAGCGACCTGTGGGACACTAACACATTTCAGTACACCTGCCAAAAATCTCCTCCAGCCAGTCATCATCACACTCCGATGCAGCGAAGTGTGTCGGAGAAGAGCAGACAGCAGCCTTCACCGCATCACCAAAGGGAAGCGGATAGAACTGTGGAGAGAAGAGCATCAAATGCTTCAATTAATTACGGTCCGGCAAGAGGAGGCACGCCAGAAGGTTATCGAGATGCGGAGACGCTGCCAATGTCTGATCGACATGCCAAGCGTCGAGGATCTGAATTCCCGCAGCCGGTGAGCACTCCTCCACAGCAGTCGCAAACAAAACGAAGACAGTCGATGGCACAGGTGAGATCTTACGCGGAAGAGAGGCCAGATAAAACGGAGATCTCTCGAAGACACGAGGAGCCTAAAAAGAAACAAGAACCTGTCCAGGAATCAGAATGGAAGCCGGAGCCTGATACTATTAGAGTGTCGAAAACCCAGGATTCTCCTGCGAAGAGGCTGAGGCAGGAGGCTGAACCGTTGAAGAGAGCGAAGGCTGTGGAGTCTCCTAGGTTAACCCAGGCCGGCAGTCAGCCTAGGCCAGAACATTACAAGAGCAGCCCTAATGTCGCGTCAAGGCATAAATCTGGCTCACCGAACAAACGCGAAGACAGAAAGTCTGCGTCGTATAGAAGCGATTCAAAGCGTCAAGATTCGGCGGAGCAACGGAAGATGTACACCGCGAGCTCGGAGTCCGAACTGTTCGAATGCGCCATACTCCCTATCTTCCACAAGCTATTGACGGAAAGGCACAAAAGTCAACCGCACGGCTTGAACCTTAGTTACGGGGTCAGCTGTCCTAACATATCCATTAAATGTGACATCGTTGAGTATTTGTAG
Protein
MKMLLILLVVVAVCRGVPQKPNLDAILNRRTDVYIAGFFPFGKGVENSNTGRGVMPSVKLALDHVNEHDSVLRNYRLHMWWNDTECNAAVGVKSFFDMMHSGPHKLMLFGAACTHVTDPIAKASKHWHLTQLSYADTHPMFTREAFPNFFRIVPSENAFNLPRIRLLQHFNWTRVGTIYQNEPRYALAHNRLLADLDTHGFLIEETQSFATEVKTALAKLKEKDVRVILGNFNETWALKIFCEAYKLEMFGRAYSWLLLGTYSNSWWTRRAPCSRRNLTAALDTAILTDLLPLSTTQETTVSGITAKDYQVEYDRRRGMEYSRFHGYTYDGIWAMALAIQTVAQRVKLRNKEKTVQDFRYRDKEWEQLFLDALSNVTFEGVTGPVRFYDNERKASILLKQFQGDEVGEVKVGEYCAERDHLDLTSWESFKWLGKNPPKDRTLRLIEHTQVNITIYSILVSCSVLGILLATGFLAMNIHYRNQRYIKMSSPHLNNLIIVGCMLTYLSVIFLGLDSSLSSIAAFPYICTARAWLLMAGFSLAFGAMFSKTWRVHSIFTDVKLNKKVIKDYQLFMVVGVLLCIDLAIMTTWQISDPFYRATKQMDPYPHPSSEDIVIVQENEYCQSERMPIFIGVIYAYKGLLLVFGAFLAWETRHVSIPALNDSQHIGLSVYNVLIMCIMGAAITLVLADHKDALFVLIGIFIIFCTTGTLCLVFVPKLLELRRNGQGGAGAGRIRATLRPASGHECRSPGPELERRLKELRQYNNRYRRTLQAKENELQMLLSKLGSDVTSESSTRGDSRSPATQRIKLPIPKENISHPETSDITSVCSLSASAGAETEYINLQPQQSIEKPRPSAPPEPIKDLTPKEPKKEQTKNVSFKNHLDYTSPPPTSKAVPEKDQLAKLPYGWSSEVREPLGPALKTSKTPEPAKAEAKTVPALKSNDTPPAMSVPAKIQEPMYTKAATPKINKTPELQKKAAQDSVSTKTTPSREHKPARGHRRMSSLSQSALLTDLMHVSVDQDDTEPPPGLERKVIGQERDPPPPPIAKPKQEPEDILDVDHDYSSMERRKSCQRRDSEKRKKENFIVVQSDLWDTNTFQYTCQKSPPASHHHTPMQRSVSEKSRQQPSPHHQREADRTVERRASNASINYGPARGGTPEGYRDAETLPMSDRHAKRRGSEFPQPVSTPPQQSQTKRRQSMAQVRSYAEERPDKTEISRRHEEPKKKQEPVQESEWKPEPDTIRVSKTQDSPAKRLRQEAEPLKRAKAVESPRLTQAGSQPRPEHYKSSPNVASRHKSGSPNKREDRKSASYRSDSKRQDSAEQRKMYTASSESELFECAILPIFHKLLTERHKSQPHGLNLSYGVSCPNISIKCDIVEYL

Summary

Uniprot
H9JV05   A0A2A4JP25   A0A194PVT9   A0A212FNG9   A0A0N1IPB5   A0A182K6G8   + More
Pubmed
19121390    26354079    22118469   
EMBL
BABH01037478    BABH01037479    BABH01037480    BABH01037481    NWSH01000974    PCG73334.1    + More
KQ459597    KPI95245.1    AGBW02005352    OWR55291.1    KQ460466    KPJ14609.1   
Proteomes
UP000005204    UP000218220    UP000053268    UP000007151    UP000053240    UP000075881    + More
PRIDE
H9JV05   
Pfam
PF00003   7tm_3        + More
PF01094   ANF_receptor
Interpro
IPR002455   GPCR3_GABA-B        + More
IPR028082   Peripla_BP_I       
IPR001828   ANF_lig-bd_rcpt       
IPR017978   GPCR_3_C       
IPR002457   GPCR_3_GABA_rcpt_B2       
SUPFAM
SSF53822   SSF53822       
CDD
cd15294  7tmC_GABA-B-R2
ProteinModelPortal
H9JV05   A0A2A4JP25   A0A194PVT9   A0A212FNG9   A0A0N1IPB5   A0A182K6G8   + More
PDB
4MS4     E-value=1.12001e-80,     Score=769

Ontologies

KEGG
101735874    K04615 gamma-aminobutyric acid type B receptor | (RefSeq) gamma-aminobutyric acid type B receptor su
PATHWAY
04080    Neuroactive ligand-receptor interaction - Bombyx mori (domestic silkworm)
GO
GO:0004965   GO:0016021   GO:0004930   GO:0007186   GO:0005891   GO:0043565   GO:0003677   GO:0003707   GO:0006281   GO:0006259  
PANTHER
PTHR10519  

Topology

SignalP
Position:   1 - 16,         Likelihood:  0.998718
 
 
Length:
1378
Number of predicted TMHs:
6
Exp number of AAs in TMHs:
146.33192
Exp number, first 60 AAs:
0.01665
Total prob of N-in:
0.00911
outside
1  -  451
TMhelix
452  -  474
inside
475  -  494
TMhelix
495  -  512
outside
513  -  526
TMhelix
527  -  549
inside
550  -  626
TMhelix
627  -  649
outside
650  -  663
TMhelix
664  -  686
inside
687  -  692
TMhelix
693  -  715
outside
716  -  1378
 
 

Population Genetic Test Statistics

Pi
223.258354
Theta
159.662879
Tajima's D
0.602165
CLR
0.661377
CSRT
0.548122593870306
Interpretation
Uncertain
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号