SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15875  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA013343
Annotation
PREDICTED:_protein_transport_protein_Sec24C_isoform_X1_[Bombyx_mori]
Location
Bomo_Chr27(-):541167-543451      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 2.591
 

Sequence

CDS
ATGATGAATCCACAATATCCACCTCCTGGGCAAAATAATAATGCTCCCAACAACCCGATATATCCACCTAGCTCCCAAGAGTACAATGGAGTACAGAATGCTAACATCTATAGTCAGATGCCGGCTGGGCCACAAAAGCAATTTGATCAGGACATGGCACAGAAAATGCAGAACATGAACATAAATGGCTCACAAGGATTCAATATCCCTCCTACACAGCTACCTCCTGGTCAAGCACCACCAAATTTTGGACCAGGGCAAGGTCAACGGCCAGCTCCAATGCCGATTAGACCACCTGCGGGAGGACAATTCCCTCCAATGACAGGACAGAGACCTCCTTCTGCAACAGGACAGGCACTAACAGCCCAAGAAGGATTTGAAACTCAGCGACCTCCAAGTCAGCCCATGCCACCTATGAGTCAACCACAGGGTATATCTGGTCAAATGCCACCTCATTCTAAGGGTGGTTTTCCATATCAACCTATACCGGTGCGGCCAGGAATGCCACCAAATCAACCTACAGCTGGAATGGTTGCTCAACCTGGAGCAGCCCCTCAGCCAGGTCCGGGAATGCAGGGCCCTCCACAATCTCAGTCAAGTTCTATACCAACAGGAATACCTCAGTCAAGAGCTGGCCCTATTCCTGGGCAACCAGGCCTCAATCCACAGTCATTAGGCCCTCAATCAGGGCCTGGACAGGGAGCCCCACCTCACCCGGGCCAAATGCCACGGCAAGGGAATGTCTCCCCAACCTCCACAACTTGGACCGGGTCTACAGCAGCAAACAGGACAGAGACAACCTCCACATATTGGTCAACAAGGCACACCTACAAGTCAACCTAG
Protein
MMNPQYPPPGQNNNAPNNPIYPPSSQEYNGVQNANIYSQMPAGPQKQFDQDMAQKMQNMNINGSQGFNIPPTQLPPGQAPPNFGPGQGQRPAPMPIRPPAGGQFPPMTGQRPPSATGQALTAQEGFETQRPPSQPMPPMSQPQGISGQMPPHSKGGFPYQPIPVRPGMPPNQPTAGMVAQPGAAPQPGPGMQGPPQSQSSSIPTGIPQSRAGPIPGQPGLNPQSLGPQSGPGQGAPPHPGQMPRQGNVSPTSTTWTGSTAANRTETTSTYWSTRHTYKST

Summary

Uniprot
H9JUY0  
Pubmed
19121390   
EMBL
BABH01037474    BABH01037475    BABH01037476    BABH01037477   
Proteomes
UP000005204   
PRIDE
H9JUY0   
Pfam
PF00626   Gelsolin        + More
PF04815   Sec23_helical
PF04811   Sec23_trunk
PF04810   zf-Sec23_Sec24
PF08033   Sec23_BS
Interpro
IPR036465   vWFA_dom_sf        + More
IPR036175   Sec23/24_helical_dom_sf       
IPR007123   Gelsolin-like_dom       
IPR036174   Znf_Sec23_Sec24_sf       
IPR029006   ADF-H/Gelsolin-like_dom_sf       
IPR006900   Sec23/24_helical_dom       
IPR012990   Sec23_24_beta_S       
IPR036180   Gelsolin-like_dom_sf       
IPR006896   Sec23/24_trunk_dom       
IPR006895   Znf_Sec23_Sec24       
SUPFAM
SSF82919   SSF82919        + More
SSF81811   SSF81811       
SSF82754   SSF82754       
SSF53300   SSF53300       
Gene 3D
3.40.20.10     3.40.50.410    
ProteinModelPortal
H9JUY0  

Ontologies

KEGG
101746623    K14007 protein transport protein SEC24 | (RefSeq) protein transport protein Sec24C
PATHWAY
04141    Protein processing in endoplasmic reticulum - Bombyx mori (domestic silkworm)
GO
GO:0006886   GO:0030127   GO:0008270   GO:0006888  

Topology

Length:
280
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01077
outside
1  -  280
 
 

Population Genetic Test Statistics

Pi
170.97409
Theta
169.757947
Tajima's D
-0.146384
CLR
0.521913
CSRT
0.332183390830459
Interpretation
Uncertain
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