Gene

KWMTBOMO15874

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr27(+):538532-539920      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.595

CDS

ATGGGAGTGCCAGACAGACTCGTGCTCATCATACGAGACTACTTGTCGAACCGTTCGTTCCGATATCGAGTCGAGGGAACGCGTTCCCGGCCCCGTCACGTCACAGCCGGAGTCCCGCAAGGCTCCGCCCTCTCCCCGTTACTATTCAGTTTGTATATTAACGATATACCCCGGTCTCCGGAGACCCATCTGGCGCTCTTCGCCGATGACACCGCCATCTACTACTCGTGTAGGAAGAAGGCGTTGCTTCATCGACGACTTCAGACCGCAGCTACCACCATGGGACAGTGGTTCCGGAAGTGGCGCATCGACATTAACCCCACGAAAAGCACAGCGGTGCTCTTCAAAAGGGGTCGCCCTCCGAACACCACGCTGAGCATCCCTCTCCCGACTAGGCGCGTCAACACCCCCGCCCCCGCCGTTCGCCCAATCACGATGTTCGACCAGCCCATACCGTGGGCCCCGAAGGTCAAATATTTAGGCGTCACCCTCGACAGTAGGATGACATTCCGCCCCCACATTAAGACGGTACGCGATCGTGCCGCCTTCATCCTAGGACGTCTCTACCCGATGATATGTATGCGAAGTAAAATGTCCCTTAGAAATAAGGTGACACTCTACAAAACTTGCATACGCCCCGTCATGACCTATGCAAGTGTAGTGTTCGCTCACGCGGCCCGCATACACTTAAAATCCTTTCAAATCATTCAATCCCGTTTTTGCAGGATAGCCGTCGGAGCCCCGTGGTTCATCAGGAATGTCGACCTCCATGACGACCTGGACTTAGAGTCCATCAGTAAGTATCTGCAGTCGGCGTCCATGCGCCACTTCGATAAAGCGGCACGACACGAGAACCCTCTCATCGTGGCCGCCGGTAACTACATTCCCGATCCTGCGGACAGAATGGAAAGCAGTCGACGTCGCCCAAAACACGTCATCTCGGATCCTCCCGATACACTAACGGTGCTTTTAGGTACTTCAAGCACCGGTCACCGTTCTCGTCGAACCCGTCGCTTGCGACGAAGGGCTCGACGAGTAAATTAA

Protein

MGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRKKALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNTPAPAVRPITMFDQPIPWAPKVKYLGVTLDSRMTFRPHIKTVRDRAAFILGRLYPMICMRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVGAPWFIRNVDLHDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSRRRPKHVISDPPDTLTVLLGTSSTGHRSRRTRRLRRRARRVN

Uniprot

K9N5J5   Q9XXW0   Q93137   Q9BPQ0   A0A194Q1H8   A0A0N0PA09   + More
A0A0N1PFV1   O96544   O96546   A0A1Y1NA23   V5I850   V5GNF3   V5GNJ2   A0A139WA11   A0A2S2PR14   A0A2S2Q823   J9KKL3   X1WMU5   X1WLB2   A0A139W8G9   X1WWC4   A0A2S2QZC0   X1WXU3   A0A224XF24   A0A087T1W0   A0A2J7PF43   A0A2J7QQP1   A0A2J7RRU8   U4UTK6   A0A023EZE6   X1X5Q5   X1X664   A0A1B6LG18   A0A087U2S8   J9LLC8   A0A2J7RB54   A0A2J7RPU2   N6UKN2   A0A2J7QUJ9   A0A2S2NKN0   A0A2J7Q0Q6   A0A2J7R6U1   A0A2J7R2E1   A0A2J7RIW7   A0A2J7RS77   J9KC83   A0A2J7R4B7   A0A2J7Q059   A0A2J7PMP6   A0A2J7Q4F7   A0A2J7RM10   A0A2J7QFL0   A0A2J7QR37   Q8T9X4   A0A2J7RKP3   A0A2J7QY69   A0A2S2PH29   A0A2J7PBY3   Q8I7P8   A0A2J7PDS9   X1WL89   A0A352X8G4   A0A2H8TWD9   A0A2J7PMP9   A0A2J7Q6J2   A0A2J7Q1Y9   A0A2S2PPK8   A0A069DZL8   X1WQI9   A0A2S2N7M6   X1X928   A0A2J7R8R8   A0A1Y1MAT4   A0A2J7PDM0   A0A2J7QAT1   A0A3N5Z7I3   A0A2J7Q5G9   A0A2J7QEZ4   A0A2H8TES1   A0A2J7Q627   A0A2J7RS81   Q07995   A0A2J7RL12   A0A069DRZ5   J9KCZ4   A0A139W9S2   A0A0C9R3N9   A0A2J7PU96   A0A1B6EH09   J9JZG6   A0A2S2R9K1   A0A087TPE4   A0A1Y1M7E9   A0A2M4BD67   A0A2S2PX53   A0A023F705   A0A2J7Q2R1   A0A2J7PVE7  

Pubmed

23652563    10333566    26354079    10380107    28004739    18362917    + More
19820115    23537049    25474469    30148503    26334808    30086797    8387152   

EMBL

KC165845    AFY12622.1    AB018558    BAA76304.1    U07847    AAA17752.1    + More
AB055391    BAB21761.1    KQ459580    KPI99178.1    KQ459259    KPJ02068.1    KQ459265    KPJ02064.1    AF081101    AAC72919.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    GALX01005300    JAB63166.1    GALX01005359    JAB63107.1    GALX01005299    JAB63167.1    KQ971729    KYB24751.1    GGMR01019198    MBY31817.1    GGMS01004685    MBY73888.1    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02014862    ABLF02014866    ABLF02061908    ABLF02042518    ABLF02057746    KQ973342    KXZ75569.1    ABLF02003961    ABLF02059872    GGMS01013269    MBY82472.1    ABLF02008933    GFTR01008038    JAW08388.1    KK113014    KFM59099.1    NEVH01026085    PNF14941.1    NEVH01012084    PNF30905.1    NEVH01000598    PNF43535.1    KB632361    ERL93526.1    GBBI01004571    JAC14141.1    ABLF02041993    ABLF02043973    GEBQ01017345    JAT22632.1    KK117880    KFM71667.1    ABLF02029215    NEVH01005938    PNF38077.1    NEVH01001355    PNF42855.1    APGK01020047    KB740155    ENN81216.1    NEVH01010546    PNF32261.1    GGMR01004707    MBY17326.1    NEVH01019964    PNF22161.1    NEVH01006754    PNF36554.1    NEVH01007838    PNF34986.1    NEVH01003017    PNF40781.1    NEVH01000280    PNF43672.1    ABLF02033757    NEVH01007443    PNF35684.1    NEVH01020071    PNF21969.1    NEVH01023962    PNF17612.1    NEVH01018383    PNF23463.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01014858    PNF27387.1    NEVH01011985    PNF31054.1    AF456125    AAL57609.1    NEVH01002716    PNF41415.1    NEVH01009134    PNF33528.1    GGMR01016114    MBY28733.1    NEVH01027074    PNF13841.1    AY180919    AAN87272.1    NEVH01026154    PNF14491.1    ABLF02019349    ABLF02041900    DNOY01000259    HBE18313.1    GFXV01006424    MBW18229.1    NEVH01023961    PNF17613.1    NEVH01017470    PNF24199.1    NEVH01019376    PNF22596.1    GGMR01018716    MBY31335.1    GBGD01000415    JAC88474.1    ABLF02022418    GGMR01000167    MBY12786.1    ABLF02066620    NEVH01006721    PNF37225.1    GEZM01039082    JAV81425.1    NEVH01026386    PNF14434.1    NEVH01016327    PNF25684.1    RPOV01000134    RPJ78669.1    NEVH01017559    PNF23833.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    GFXV01000774    MBW12579.1    NEVH01017542    PNF24034.1    NEVH01000269    PNF43694.1    S59870    AAB26437.2    NEVH01002704    PNF41489.1    GBGD01002174    JAC86715.1    ABLF02008463    KQ972067    KYB24656.1    GBYB01007412    JAG77179.1    NEVH01021205    PNF19912.1    GEDC01000118    JAS37180.1    ABLF02037436    GGMS01017421    MBY86624.1    KK116158    KFM66983.1    GEZM01038405    JAV81653.1    GGFJ01001858    MBW50999.1    GGMS01000737    MBY69940.1    GBBI01001692    JAC17020.1    NEVH01019080    PNF22876.1    NEVH01020963    PNF20308.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000054359    UP000235965    UP000030742    + More
UP000019118   

PRIDE

K9N5J5    Q9XXW0    Q93137    Q9BPQ0    Q8T9X4    Q8I7P8    + More

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos
PF07530   PRE_C2HC
PF10551   MULE
PF17919   RT_RNaseH_2
PF17921   Integrase_H2C2
PF00077   RVP
PF00665   rve
PF17917   RT_RNaseH

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       
IPR018289   MULE_transposase_dom       
IPR036875   Znf_CCHC_sf       
IPR012337   RNaseH-like_sf       
IPR001969   Aspartic_peptidase_AS       
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       
IPR001995   Peptidase_A2_cat       
IPR041373   RT_RNaseH       
IPR018061   Retropepsins       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR021109   Peptidase_aspartic_dom_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       
SSF53098   SSF53098       
SSF50630   SSF50630       

Gene 3D

3.60.10.10     2.40.70.10     3.30.420.10    

ProteinModelPortal

K9N5J5   Q9XXW0   Q93137   Q9BPQ0   A0A194Q1H8   A0A0N0PA09   + More
A0A0N1PFV1   O96544   O96546   A0A1Y1NA23   V5I850   V5GNF3   V5GNJ2   A0A139WA11   A0A2S2PR14   A0A2S2Q823   J9KKL3   X1WMU5   X1WLB2   A0A139W8G9   X1WWC4   A0A2S2QZC0   X1WXU3   A0A224XF24   A0A087T1W0   A0A2J7PF43   A0A2J7QQP1   A0A2J7RRU8   U4UTK6   A0A023EZE6   X1X5Q5   X1X664   A0A1B6LG18   A0A087U2S8   J9LLC8   A0A2J7RB54   A0A2J7RPU2   N6UKN2   A0A2J7QUJ9   A0A2S2NKN0   A0A2J7Q0Q6   A0A2J7R6U1   A0A2J7R2E1   A0A2J7RIW7   A0A2J7RS77   J9KC83   A0A2J7R4B7   A0A2J7Q059   A0A2J7PMP6   A0A2J7Q4F7   A0A2J7RM10   A0A2J7QFL0   A0A2J7QR37   Q8T9X4   A0A2J7RKP3   A0A2J7QY69   A0A2S2PH29   A0A2J7PBY3   Q8I7P8   A0A2J7PDS9   X1WL89   A0A352X8G4   A0A2H8TWD9   A0A2J7PMP9   A0A2J7Q6J2   A0A2J7Q1Y9   A0A2S2PPK8   A0A069DZL8   X1WQI9   A0A2S2N7M6   X1X928   A0A2J7R8R8   A0A1Y1MAT4   A0A2J7PDM0   A0A2J7QAT1   A0A3N5Z7I3   A0A2J7Q5G9   A0A2J7QEZ4   A0A2H8TES1   A0A2J7Q627   A0A2J7RS81   Q07995   A0A2J7RL12   A0A069DRZ5   J9KCZ4   A0A139W9S2   A0A0C9R3N9   A0A2J7PU96   A0A1B6EH09   J9JZG6   A0A2S2R9K1   A0A087TPE4   A0A1Y1M7E9   A0A2M4BD67   A0A2S2PX53   A0A023F705   A0A2J7Q2R1   A0A2J7PVE7  

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519   GO:0008270   GO:0003676   GO:0005634   GO:0015074   GO:0004190  

Length:

347

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.543689999999999

Exp number, first 60 AAs:

0.01605

Total prob of N-in:

0.02421

outside

1  -  347

 

 

Pi

44.27273

Theta

51.002535

Tajima's D

0.580177

CLR

0.114985

CSRT

0.538873056347183

Interpretation

Uncertain