Gene

KWMTBOMO15873  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013343

Annotation

PREDICTED:_protein_transport_protein_Sec24C_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr27(-):520258-541031      View in EpiBrowser

Full name

Delta-like protein      

Location in the cell

Nuclear   Reliability : 1.351

CDS

ATGCCCGGTATGCCACACATGCCACCACCCTTGGCCCAGCAAAGACAGTTTCCCAATGCTCCTGCTCAGCCTGGATATGGAGCGCCACCTGGGCCACCTACTAGTGCAGCCTTTCCTGGCATGCCACCCCTTCCACCACAAGGCCATGGGCAACAATATCAAGGACAACCATCAGGCTACCCGCCACAGTACCAACCTCCATTCCCAGCACAACAGCCAAGCTACCCAGGTCAGCAGTATCAACCACCACAGAAAACCCTAGATCCGGACCAAATGCCCAGTCCGATCGAGGTGATGTTGGATGACCAACAGAACCGGGGTGGTGTCTTTGTTACGAATGGTAAAGGATTAGTTCCGCCGCTGGTGACCACCGATTTCATCGTTGACGACAAAGGGAATGCCAGTCCCCGCTACATTCGGAGTTCCATGTACACGGTGCCTGTGACCGCAGACCTGCTGAAGCAAACCGCCATGCCGTTCTGTTTGGTCGTGTCCCCGATGGCGGAGACGGTGGGGCAGGAGCTGGAGCCGCCGCTGCTGGACTTCGCGGCGCTGACGGGGTCCCCCGGCATGGGCCCGGTGCGCTGCTGCCGCTGCAAGGCCTACATGTGCCCCAACATGAAGTTCGTGGACGCCGGGAGACATTTCAAGTGTGCCTTCTGCAAGGCGACTACTGAGGTGCCGATGGAGTACACTCAGTACGTGAACAGCATGCAGCAGTACGGGCGGGTGCCGGCGGAGATGGCGCTGGGGGCCTACGAGATAGTCGCCACCACCGAGTACTGCAGGAACAACACGCTGCCGAAGCCGCCGGCCACCGTGTTCGTGCTGGACGTGTCGTACAACGCCGTCAAGAGCGGCCTCGTCGACGCGTTCTGCGAGAACATCCTCGACATCATCCGGGAGCTGCCCAAGGACGAGCAAGGGAAGAGCTACACCCGCGTCGGCTTCATCACCTACAGCTCGACCGTTCACTTCTACAACATCAAGGGCAGCTTAGGCCAAGCCCAAATGCTGTCGGTGGGCGACGTGGGCGACATGTTCGTGCCCATCCTGGAGGGGTTCCTGGAGAGGGTCGAGGACAGCGGCTCGGTGCTCGCCTCCCTGCTGGAGCAGATTCCCGCCATGTTCAGAGAGAACAAGGAGACGGAGACTGTCATGCTGCCGGCCGTTCAGGCTGGTCTGGAAGCTTTGAAAGCTGCCGACACCGCCGGTCAGCTGTTCGTGTTCCACACTACGCTGCCCACGTACAACGCGCCCGGGAAGCTCGTCAACCGCGAGGACAGGAAGCTTTTGGGAACCGACAAGGAAAAGCAGATATTGGGTCCGCAGAACACCGCGTACAACGAGCTGGGCGCGGCGTGCTCGGCGGCCGGCGTGGCCGTGCAGCTGTTCGCCTGCAACAACGCCTACATCGACGCCGCCACCGTGGGGCAGCTGCCGCGCCTCACCGGCGGACAGCTCTACAAGTACACCTACTTCACGGCGGAGTGCGACGGCGCGCGGCTGCTGCGGGACGTGCGGCGCGCGCTGCGACGTCCGGCCGCGCACGACGCCGTCATGCGACTGCGGACGTCCACCGGCGTGCGCCCCACCGACTTCTACGGGCACTTCTTCATGTCCAACACCACCGACGTGGAGCTCGCCGTCATGGACGCGGACAAGGCGGTCGGCATCGAGGTGAAGCACGACGACAAGCTGACGGCGGAGGAGGGCGTGTACGTGCAGGCGGCGCTGCTGTACACGCACCGCTCGGGCCAGCGCCGGCTGCGCGTGCTCAACCTGGCGCTCAGCGTGGCGCACCAGCTCGCCGACGTCTACCGCAGCATGGAGCTCGACACCTGCATCAACTTCCTGACCAAACAAGCGGTGTGGGCGGTGCGGGAGGCGGGGGGCCGCGCGGCGCGGCAGGCGCTGGGGGCGCGCTGTGCCCGCTCGCTGGCCGCCTACCGCCGCCACTGCGCCTCGCCCTCCGCCGCCGGACAGCTCGTGCTGCCGGAGTCCATGAAGCTGCTGCCGCTCTACACCTGCTGTCTGCTGCGCTCCGACGCGCTGGCCGGAGGCCCCGACATCACGTGCGACGACCGCTCGTGCGCGATGTACCGTGCGCTCACCGCCGACGTGGCCACATCCGTGGTCTACACTTACCCTCGCCTGCTCCCGCTGCACAAGCTGGCTGACTCGCCGGACGCTAAGCTCACCCCGCTGAGGGCTTCCATAGACAAGATGAATGAATTCGGGGTATATTTACTGGAGAACGGCGTGCACATGTTGCTGTGGGTGGGGTCCCAGGCGCCCGCCGAGTTCGTGCGCGACGTGTTCGGCGTGAGCTCCCCTCAACAGATCGAGCCCACGGTCTACGAGCTGCCCGTCCTCGACACGCCCATCAGCCGTACCGTGCGCGCACAGATCGAGCACGCGCGCGACGCACGCCGCCTCTGCATGCGGCTAACGATAATGCGCCAACACGACAAATTAGAGACGGTGCTACGTCACTTCCTGGTCGAGGACCGAGGCGTCGACGGAAGCGCGTCATACGTTGACTTCCTCTGCCACGTGCACAAGGAGATCAGACAACTTCTATAG

Protein

MPGMPHMPPPLAQQRQFPNAPAQPGYGAPPGPPTSAAFPGMPPLPPQGHGQQYQGQPSGYPPQYQPPFPAQQPSYPGQQYQPPQKTLDPDQMPSPIEVMLDDQQNRGGVFVTNGKGLVPPLVTTDFIVDDKGNASPRYIRSSMYTVPVTADLLKQTAMPFCLVVSPMAETVGQELEPPLLDFAALTGSPGMGPVRCCRCKAYMCPNMKFVDAGRHFKCAFCKATTEVPMEYTQYVNSMQQYGRVPAEMALGAYEIVATTEYCRNNTLPKPPATVFVLDVSYNAVKSGLVDAFCENILDIIRELPKDEQGKSYTRVGFITYSSTVHFYNIKGSLGQAQMLSVGDVGDMFVPILEGFLERVEDSGSVLASLLEQIPAMFRENKETETVMLPAVQAGLEALKAADTAGQLFVFHTTLPTYNAPGKLVNREDRKLLGTDKEKQILGPQNTAYNELGAACSAAGVAVQLFACNNAYIDAATVGQLPRLTGGQLYKYTYFTAECDGARLLRDVRRALRRPAAHDAVMRLRTSTGVRPTDFYGHFFMSNTTDVELAVMDADKAVGIEVKHDDKLTAEEGVYVQAALLYTHRSGQRRLRVLNLALSVAHQLADVYRSMELDTCINFLTKQAVWAVREAGGRAARQALGARCARSLAAYRRHCASPSAAGQLVLPESMKLLPLYTCCLLRSDALAGGPDITCDDRSCAMYRALTADVATSVVYTYPRLLPLHKLADSPDAKLTPLRASIDKMNEFGVYLLENGVHMLLWVGSQAPAEFVRDVFGVSSPQQIEPTVYELPVLDTPISRTVRAQIEHARDARRLCMRLTIMRQHDKLETVLRHFLVEDRGVDGSASYVDFLCHVHKEIRQLL

Description

Putative Notch ligand involved in the mediation of Notch signaling.

Feature

chain  Delta-like protein

Uniprot

H9JUY0   A0A2H1WSN1   A0A194PR70   A0A0N1IPJ3   A0A2A4JMX5   A0A2A4JPF9   + More
D7EJY5   A0A023F384   A0A069DXA0   A0A224X5P6   A0A0V0G2R9   A0A1W4WZJ2   V9II56   A0A088ALU6   A0A1W4WY86   A0A1L8DW21   A0A1Y1MFN5   A0A154PFW8   N6TKF1   U4UT33   A0A0M8ZZV2   A0A0L7QQ95   A0A195BK76   A0A336KZF3   A0A158N9Z4   A0A026WNZ1   A0A336M7V6   A0A0P4W0W6   A0A0T6AW58   A0A195EKE7   A0A1B6DIU7   T1I812   A0A151WH69   F4WC72   A0A1S4F969   E2AH41   Q17BF4   A0A067QVF9   E9IER6   A0A023EVE2   A0A195FSJ7   E2BSR7   K7ITU4   A0A2J7RIN8   A0A182GDC7   U5EY34   A0A232F8E9   A0A310SC50   A0A0A9W2S1   A0A1Q3FC83   A0A1Q3FC42   A0A1Q3FCG7   A0A146LZK0   A0A1Q3FC90   A0A1S4GZA7   A0A182IB36   A0A182TP23   A0A182X612   A0A182V421   A0A1S4GZ99   A0A1B6ETT4   B0WPW2   A0A182JZM1   A0A1Y9HAF9   A0A182NT59   A0A1J1IMM7   A0A0A1WLA3   A0A240PKJ4   A0A195CUQ3   A0A2M3Z192   A0A182M4B9   A0A2M3Z088   A0A1W4V6C1   A0A2M4A355   A0A182F2T9   B4LQM1   A0A1I8PBT5   A0A2M4A231   A0A2M4BB70   A0A2M4BBV7   A0A2M4BB21   A0A2M4A2Y0   A0A2M4BB84   A0A2M4A6H4   A0A0K8TSD4   A0A182R2J1   A0A182Y9B0   A0A2M4A297   B4KFK7   K7IYS6   W5JEZ8   W8CC36   B4NW71   A0A182WA03   A0A034VMR9   A0A0J9TDR1   B4JR04   A0A034VL43   A0A1I8MRM3   A0A2M4CHQ4  

Pubmed

19121390    26354079    18362917    19820115    25474469    26334808    + More
28004739    23537049    21347285    24508170    27129103    21719571    20798317    17510324    24845553    21282665    24945155    20075255    26483478    28648823    25401762    26823975    12364791    25830018    17994087    26369729    25244985    20920257    23761445    24495485    17550304    25348373    22936249    25315136   

EMBL

BABH01037474    BABH01037475    BABH01037476    BABH01037477    ODYU01010766    SOQ56079.1    + More
KQ459597    KPI95244.1    KQ460466    KPJ14611.1    NWSH01000974    PCG73331.1    PCG73333.1    KQ972213    KYB24587.1    GBBI01003076    JAC15636.1    GBGD01000191    JAC88698.1    GFTR01008619    JAW07807.1    GECL01003688    JAP02436.1    JR048682    AEY60730.1    GFDF01003465    JAV10619.1    GEZM01035104    JAV83400.1    KQ434896    KZC10745.1    APGK01034651    KB740914    ENN78393.1    KB632352    ERL93270.1    KQ435789    KOX74490.1    KQ414786    KOC60808.1    KQ976455    KYM85053.1    UFQS01001202    UFQT01001202    SSX09722.1    SSX29489.1    ADTU01009920    KK107148    EZA57391.1    UFQT01000665    SSX26295.1    GDKW01000060    JAI56535.1    LJIG01022659    KRT79388.1    KQ978739    KYN28740.1    GEDC01011716    JAS25582.1    ACPB03012728    KQ983135    KYQ47183.1    GL888070    EGI68052.1    GL439483    EFN67158.1    CH477322    EAT43590.1    KK852898    KDR14171.1    GL762666    EFZ20939.1    GAPW01000173    JAC13425.1    KQ981305    KYN42874.1    GL450241    EFN81313.1    NEVH01003495    PNF40686.1    JXUM01009877    JXUM01009878    JXUM01009879    JXUM01009880    KQ560294    KXJ83215.1    GANO01002220    JAB57651.1    NNAY01000705    OXU26882.1    KQ763867    OAD54685.1    GBHO01042836    GBRD01018104    JAG00768.1    JAG47723.1    GFDL01009878    JAV25167.1    GFDL01009894    JAV25151.1    GFDL01009771    JAV25274.1    GDHC01005608    JAQ13021.1    GFDL01009849    JAV25196.1    AAAB01008944    APCN01000637    GECZ01028374    GECZ01016039    JAS41395.1    JAS53730.1    DS232030    EDS32550.1    AXCN02000729    CVRI01000055    CRL01475.1    GBXI01014826    JAC99465.1    KQ977276    KYN04413.1    GGFM01001524    MBW22275.1    AXCM01000091    GGFM01001140    MBW21891.1    GGFK01001925    MBW35246.1    CH940649    EDW64478.2    GGFK01001387    MBW34708.1    GGFJ01001090    MBW50231.1    GGFJ01001157    MBW50298.1    GGFJ01001079    MBW50220.1    GGFK01001826    MBW35147.1    GGFJ01001173    MBW50314.1    GGFK01003030    MBW36351.1    GDAI01000329    JAI17274.1    GGFK01001550    MBW34871.1    CH933807    EDW13122.2    ADMH02001599    ETN61898.1    GAMC01004246    JAC02310.1    CM000157    EDW87351.2    GAKP01016114    JAC42838.1    CM002910    KMY87620.1    CH916372    EDV99334.1    GAKP01016115    GAKP01016113    JAC42837.1    GGFL01000270    MBW64448.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000218220    UP000007266    UP000192223    + More
UP000005203    UP000076502    UP000019118    UP000030742    UP000053105    UP000053825    UP000078540    UP000005205    UP000053097    UP000078492    UP000015103    UP000075809    UP000007755    UP000000311    UP000008820    UP000027135    UP000078541    UP000008237    UP000002358    UP000235965    UP000069940    UP000249989    UP000215335    UP000075840    UP000075902    UP000076407    UP000075903    UP000002320    UP000075881    UP000075886    UP000075884    UP000183832    UP000075880    UP000078542    UP000075883    UP000192221    UP000069272    UP000008792    UP000095300    UP000075900    UP000076408    UP000009192    UP000000673    UP000002282    UP000075920    UP000001070    UP000095301   

PRIDE

H9JUY0   

Pfam

PF00626   Gelsolin        + More
PF04815   Sec23_helical
PF04811   Sec23_trunk
PF04810   zf-Sec23_Sec24
PF08033   Sec23_BS
PF01414   DSL
PF07645   EGF_CA
PF07657   MNNL
PF12661   hEGF
PF00008   EGF

Interpro

IPR036465   vWFA_dom_sf        + More
IPR036175   Sec23/24_helical_dom_sf       
IPR007123   Gelsolin-like_dom       
IPR036174   Znf_Sec23_Sec24_sf       
IPR029006   ADF-H/Gelsolin-like_dom_sf       
IPR006900   Sec23/24_helical_dom       
IPR012990   Sec23_24_beta_S       
IPR036180   Gelsolin-like_dom_sf       
IPR006896   Sec23/24_trunk_dom       
IPR006895   Znf_Sec23_Sec24       
IPR041742   Sec24-like_trunk_dom       
IPR000742   EGF-like_dom       
IPR018097   EGF_Ca-bd_CS       
IPR013032   EGF-like_CS       
IPR000152   EGF-type_Asp/Asn_hydroxyl_site       
IPR011651   Notch_ligand_N       
IPR001881   EGF-like_Ca-bd_dom       
IPR009030   Growth_fac_rcpt_cys_sf       
IPR001774   DSL       

SUPFAM

SSF82919   SSF82919        + More
SSF81811   SSF81811       
SSF82754   SSF82754       
SSF53300   SSF53300       
SSF57184   SSF57184       

Gene 3D

3.40.20.10     3.40.50.410    

CDD

cd01479  Sec24-like

ProteinModelPortal

H9JUY0   A0A2H1WSN1   A0A194PR70   A0A0N1IPJ3   A0A2A4JMX5   A0A2A4JPF9   + More
D7EJY5   A0A023F384   A0A069DXA0   A0A224X5P6   A0A0V0G2R9   A0A1W4WZJ2   V9II56   A0A088ALU6   A0A1W4WY86   A0A1L8DW21   A0A1Y1MFN5   A0A154PFW8   N6TKF1   U4UT33   A0A0M8ZZV2   A0A0L7QQ95   A0A195BK76   A0A336KZF3   A0A158N9Z4   A0A026WNZ1   A0A336M7V6   A0A0P4W0W6   A0A0T6AW58   A0A195EKE7   A0A1B6DIU7   T1I812   A0A151WH69   F4WC72   A0A1S4F969   E2AH41   Q17BF4   A0A067QVF9   E9IER6   A0A023EVE2   A0A195FSJ7   E2BSR7   K7ITU4   A0A2J7RIN8   A0A182GDC7   U5EY34   A0A232F8E9   A0A310SC50   A0A0A9W2S1   A0A1Q3FC83   A0A1Q3FC42   A0A1Q3FCG7   A0A146LZK0   A0A1Q3FC90   A0A1S4GZA7   A0A182IB36   A0A182TP23   A0A182X612   A0A182V421   A0A1S4GZ99   A0A1B6ETT4   B0WPW2   A0A182JZM1   A0A1Y9HAF9   A0A182NT59   A0A1J1IMM7   A0A0A1WLA3   A0A240PKJ4   A0A195CUQ3   A0A2M3Z192   A0A182M4B9   A0A2M3Z088   A0A1W4V6C1   A0A2M4A355   A0A182F2T9   B4LQM1   A0A1I8PBT5   A0A2M4A231   A0A2M4BB70   A0A2M4BBV7   A0A2M4BB21   A0A2M4A2Y0   A0A2M4BB84   A0A2M4A6H4   A0A0K8TSD4   A0A182R2J1   A0A182Y9B0   A0A2M4A297   B4KFK7   K7IYS6   W5JEZ8   W8CC36   B4NW71   A0A182WA03   A0A034VMR9   A0A0J9TDR1   B4JR04   A0A034VL43   A0A1I8MRM3   A0A2M4CHQ4  

PDB

3EH2     E-value=0,     Score=1947

KEGG

101746623    K14007 protein transport protein SEC24 | (RefSeq) protein transport protein Sec24C

GO

GO:0006886   GO:0030127   GO:0008270   GO:0006888   GO:0003331   GO:0040003   GO:0071711   GO:0072659   GO:0008360   GO:0000902   GO:0022409   GO:0035158   GO:0034394   GO:0048081   GO:0007029   GO:0035149   GO:0070971   GO:0007030   GO:0016203   GO:0009306   GO:0030011   GO:0016021   GO:0007275   GO:0007219   GO:0005509   GO:0005891   GO:0043565   GO:0003677   GO:0003707   GO:0006281   GO:0006259  

Subcellular location

Membrane  

Length:

861

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00383

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00002

outside

1  -  861

 

 

Pi

198.967806

Theta

171.480606

Tajima's D

0.666141

CLR

0.121568

CSRT

0.56357182140893

Interpretation

Uncertain