Gene

KWMTBOMO15872

Pre Gene Modal

BGIBMGA013346

Annotation

PREDICTED:_muscle_calcium_channel_subunit_alpha-1-like_[Bombyx_mori]

Location

Bomo_Chr27(-):404968-481691      View in EpiBrowser

Full name

Voltage-dependent L-type calcium channel subunit alpha       + More
Voltage-dependent calcium channel type D subunit alpha-1      
Muscle calcium channel subunit alpha-1      

Alternative Name

MDL-alpha-1

Location in the cell

PlasmaMembrane   Reliability : 4.391

CDS

ATGAACGCGAACGGAGATTCTCAGGGCCTCGTGCCAGCTGCCCCCGCCACCACACCCACCGCCCCCCCCATCACCACACCGCCTGCTCATGTCGACGGCTCCTTACTTCCGATCCCACCAGTCGCCCCTAGGAAACCAGTCCGCAGGGGAGCCAAGGCACAACCAGAGAGGCCGAAGAGAGCACTCTTCTGCTTGACGATGAAAAATCCTCTCAGAAAAGTCTGCGTTGACATCGTGGAATGGAAACCCTTCGAGTGGATGATCCTAACGACAATATTCGCGAACTGTATCGCCTTGGCTGTCTACACGCCGTATCCTGCCAGCGACTCCAATTACACCAACTGGGTTCTGGAGAAAATTGAATACGTATTCCTTGTGATCTTCACCGGGGAATGCGTGATGAAGATCATCGCTTATGGCTTCGTGATGCATCCAGGGTCTTACCTTAGAAACGGATGGAATTTGCTCGACTTCACTATAGTGGTTATCGGAATGGTGAGCACAGTCCTGTCAAGCATCTTCAAGGACTCTTTCGATGTGAAAGCTCTACGAGCGTTCAGAGTACTTCGCCCACTCAGGCTGGTTTCTGGAGTACCGAGTCTGCAGATCGTGCTGAATTCTATCTTAAAAGCGATGGTCCCTCTCCTCCACATAGCTTTACTTGTGATATTCGTCATCATCATCTACGCCATCATCGGTCTCGAGCTGTTCTCCGGGAAGATGCACAAGAGCTGCTTCAATAAATACACAGATGAGATAATGGACAGTCCCCATCCGTGTGACAACGACAATGGCTTCAACTGCTCCTCCCTCGGCCCAGAGATGGAGTGTCGCGAGGGCTGGCCTGGCCCTAACTTTGGCATCACCAACTTTGATAATTTCGGTCTCTCCATGCTAACCGTCTTCCAATGCATCACGCTCGAAGGGTGGACCGATGTCATGTATAATATCCAAGACGCCATGGGTAACAGCTGGGAATGGATTTACTTCGTTTCGATGGTGATTCTGGGAGCTTTCTTCGTGATGAACCTGATTCTCGGTGTGTTGTCCGGTGAGTTCTCTAAAGAAAGAGAGAAAGCGAAGAACCGAGGTGACTTCCAGAAGTTAAGAGAAAAGCAGCAGTTAGAAGAAGATTTGAAAGGTTACCTAGATTGGATCACTCAAGCGGAATACTTGGAGCCCGTGGACCAACATGACAACAGCAATCAGAAAGGAGATTTCGGAGGACCGACACAGAACGAGCACGATTCCACGGATCATCTCGGCGTAGAAACAGTTGAACCACAGAAAGTGTCGATCTCATGGAAAAAGGATTTTGATAAGGTGAACCGCCGCATGAAAAGGGCCTGTCGAAAAGCGGTCAAATCGCAAACATTCTACTGGCTGATCATAGTTTTAGTCTTCCTGAACACGGTAGTGCTCGCCAGTGAACATTATCGGCAACCAGAGTGGCTGGACCATTTCCAAGAATACGGAAACGCGTTCTTCGTGGCTCTATTCACTTTAGAAATGTTAGTCAAAATGTACAGCCTGGGATTGCAAGGCTACTTCGTTTCACTATTCAACCGTTTCGACTGCTTCGTCGTGATCGGCTCCATCAGCGAGATGGTGCTGACGAAGAGCGAGGTGATGCCTCCACTGGGCATCTCCGTGCTGCGATGCGTCAGGCTGCTTCGAGTCTTCAAGGTTACGAAATATTGGCGTTCACTGTCCAACCTTGTAGCGTCACTCCTCAACTCGATCCAGTCAATCGCATCTCTACTTCTGTTACTGTTCCTGTTCATCATGATCTTTGCACTCCTCGGGATGCAAGTTTTTGGAGGGAAATTCAACTACGACCCTGTGGAAGAAAAGGACAGGCACAATTTCGATTGCTTCTGGCAGGCATTATTGACTGTTTTTCAGATCCTGACTGGTGAAGACTGGAACGCGGTTATGTATGAAGGTATCAAGGCATATGGAGGCGCAGGCACGGTCGGAATAGTAGCTTGTATATATTTCATCATATTGTTCATTTGCGGCAACTATATTCTTCTCAATGTGTTCTTGGCCATTGCTGTTGACAACTTGGCGGATGCTGAGTCGCTCACTAATATCGACAAGGAAGAGGGGGCTTGTGAAGAAAAGGAAGAGAGTATGGTAGCTATAGAAGGAGTTCAAGGTGATACTGATGATGAATACATACATGATGATGAAGCGTATACCACTGATAATTCTGAAAGGGAATATGAAGAAACAGGGTCAGAAGGTGACCCGCAAGATGAGATCGAAGAAGAAGAAGAAGAAGAATTAGATGAGAACGAGTTAGAAGATAGAGTCGAAGAGGAACAAGAAAGAGATGAAGATATGGAAATGATGGAAGGACACCAGCGGAATCATATAGATGGCGGCAAATCCGAAGAGGAGGGAAAACTGGTAACAGCAAGACCCCGACGCATATCAGAACTGAATATGCCAAATCAAACGCCGCCAATACCGAACGCTAGTAGTTTCTTCATATTTTCACCAACAAACAGGTTTCGAGTTCTGTGCTACAAATTGTCGTCTTCTTCGACATTTGGAAATATAATATTGGTCTGTATTATGCTTTCGTCGGCCATGTTGGCTGCTGAAGATCCATTGGATGCAGTTCAGAGTGGATTCAGAAACTGGTTACTCAGCCAATTCGACGTGTTCTTCACTGGTATATTCACGCTGGAGCTGTTTCTGAAGCTGGTGACGTACGGGCTGATCCTCCACCAGGGTGCCTTTCTGCGATCCGCCTTCAACGTTCTCGACATGCTGGTCGTTTGCGTATCGCTTGTGTCTATGAATCTTAAGTCTGGTAGTATATCCGTGGTGAAAATATTACGAGTGTTCAGGGTGCTCAGACCGCTCAGGGCTATCAACAGGGCGAAGGGTCTTAAGCACGTTGTACAATGCGTGATCGTTGCAATCAAAACAATCGGAAACATATTATTGGTTACATCGTTACTACAGTTCATGTTTGCCGTGATGGGAGTCCAAATGTTCAAGGGTAAATTTTTTAGATGTAATGATATTTCTAAGATGACAAAAGAAGAATGTCAGGGAACCTATTTAGTATTTGAGAATCGTAATTACGTTGTAAGAGACCGGGAATGGAAACGCAACGACTTTCATTTCGACAATGTGATGAAGGGAATGCTTACTTTGTTCACTGTGTCGACGTTTGAAGGCTGGCCAGGGTTGCTGTATGTTTCAATAGATTCAAATGCGGAGGATCGCGGTCCCATAACTAACTTCCGTCCAATTGTTGCAGCCTACTACATTATTTATATTATTATAATTGCCTTCTTTATGGTAAATATATTCGTGGGTTTCGTCATAGTGACATTCCAAAACGAGGGTGAACAGGAATACAAGAATTGTGAACTAGACAAGAATCAGAGAAACTGTATTGAGTTTGCGTTGAAAGCAAAGCCGATCAGAAGGTACATTCCCAAGCACCGCATTCAATACAAAGTGTGGTGGTTCGTCACCTCACAGCCGTTTGAATATGCGATCTTCGTCCTCATCATGATCAACACCATCACGTTAGCCATGAAGTACCACAACCAGTCCATCGAATATAGCAAGGCTTTGGACATGCTCAATATGTTGTTCACGGCCGTTTTTGCCTTGGAGTTCATATTCAAACTAGCTGCGTTTAGATTTAAGAACTACTTCGGGGACGCTTGGAACACCTTTGACTTCATTATAGTACTCGGAAGCATCATTGATATAGTCGTTTCGCAAGTAAACGAATTGAAGAATCAGGGAAGTGGCATGCCCAGAATACATGTTGTAAAGGAGAGCTCAATACCGTCGATAAACTTCTTCCGTTTGTTTCGTGTGATGAGACTCGTGAAGCTGCTGTCCAGGGGCGAAGGCATCAGAACGTTGTTGTGGACCTTCATAAAGTCGTTCCAAGCCCTCCCGTACGTCGCTCTGCTGATACTGATGCTGTTCTTCATTTATGCTGTTGTGGGCATGCAGGTATTCGGAAAGATAGCAATAGACGACAATACTCCGATCACAAGGAACAATCACTTCCAGACATTCCCGCAGGCTATATTAGTGTTATTCAGATCTGCCACAGGTGAAGCATGGCAGGACATCATGATGGGAGTGTCGCCAGACTCTGAGGTCAAGTGCGATAAGAATTACCACGAGGAAGTGGGAGAGGATAGCGAAGGCACCTGTGGAAGTGTATTAGCATTCCCATATTTTATATCATTTTATGTGTTATGTTCTTTTCTGATTATCAATTTATTCGTTGCGGTCATTATGGATAACTTTGACTATCTAACTAGAGATTGGTCAATATTGGGACCACACCACTTAGATGAATTTATAAGACTTTGGAGCGAATATGACCCTGACGCAAAGGGTAGAATAAAACATTTAGATGTAGTTACTTTACTAAGAAAAATAAGTCCGCCTTTGGGATTCGGCAAGCTCTGTCCTCACCGCGTTGCCTGCAAACGACTAGTTTCCATGAACATGCCTCTCAATTCAGATGGCACTGTTCTCTTCAACGCTACACTGTTCGCCGTCGTCAGAACTTCATTGAAGATTAAAACGGATGGTAACATTGACGACTGCAACACAGAATTAAGAGCAGTGATAAAGAAAATCTGGAAACGCACATCACCAAAACTCCTGGACCAAGTAGTTCCTCCACCAGGCGACCCCAACGAGATCACAGTCGGAAAGTTCTACGCCACCTTCCTAATCCAAGACTACTTCAGGAGGTTCAAAAAGCGGAAAGAACAAGAATTAAGGCAAAATGATGAGCAAACGCATCAGATGACGCTGCAAGCCGGATTGAGGACTTTGCATGAAGCCGGGCCGGAACTAAAGAGGGCTATCTCTGGTAATCTGGATGATATAACGGCCGAGTTAGATGTACCTATGCATAGGAGAAATCACTCGCTGTTTGGAGGTGTCTGGTCAAGTATACGACGGCACGGTCCTAACAGACATCTTCATAGACACAGAAAAGAGCCGCCGCCAGAGGCTGTTGGCAATCATTTAAGCTCCTTAATGCAGAAAGAATATGGGGTTGGACCGTTGCCGCTGACACCCAATTTGGCAAACGGACAACCAAAAGAACAGATACCAATGAGGCCTCTTATACTAAACGGTGAATCAGAAAAAATATATCAAGTCTTAGACAACCAAAAGTCGAACTACCCCGAAATGCTCGGGCAGATCGGGCTCGCGTTCGGGTGCGTGAACTACTTGTCGGCGGCGGGAGGGAGCTCGCGACAACGCGTCCACCCAGAGGACGACGAGCGAGCGGAGACGATCCAGCCGAAGATATCGCCGCTGCTGGCGAGCGCCTGCACTCCCACGACGGAGGCGCGCACGATGACGCTGTACGGCTACAACGCGGCGGCGCGGTTACCGTTCGCGTTCTCTCACGGCGGACGCCGGTCGCTCCGCGCGTGTCGCACGGCGCCGGCGGTGGCAGGAACCGATAGCGCTGGTCGAGGCGTTGTATCGCTGCCAGGAAGTCCCCGCGGAAACAGCTCCTCATTACCAGTAGTAGGCTCCGCAGAAAGCCTAGTCACTAGAGTGTTGACTGAACAAGGACTAGGAGAATACTGCGATCCAGAGTTCGTCAGGAACACTTCTAGAGAGATGCAGGAAGCACTCGAGATGACAGAAGAGCAGATGGACAGAGCGGCTCATCAGCTGATGATTCACGAAAAGAATTTGAAGCAAGCTCAATGTCAACCAACTCAAGTTGGCGACATCGTAGCCCGCAAGTTCCACCCTTTTCACCAGCCAACATCGATGCCTCCCCCGGCCTGCGAGCGGTTATAG

Protein

MNANGDSQGLVPAAPATTPTAPPITTPPAHVDGSLLPIPPVAPRKPVRRGAKAQPERPKRALFCLTMKNPLRKVCVDIVEWKPFEWMILTTIFANCIALAVYTPYPASDSNYTNWVLEKIEYVFLVIFTGECVMKIIAYGFVMHPGSYLRNGWNLLDFTIVVIGMVSTVLSSIFKDSFDVKALRAFRVLRPLRLVSGVPSLQIVLNSILKAMVPLLHIALLVIFVIIIYAIIGLELFSGKMHKSCFNKYTDEIMDSPHPCDNDNGFNCSSLGPEMECREGWPGPNFGITNFDNFGLSMLTVFQCITLEGWTDVMYNIQDAMGNSWEWIYFVSMVILGAFFVMNLILGVLSGEFSKEREKAKNRGDFQKLREKQQLEEDLKGYLDWITQAEYLEPVDQHDNSNQKGDFGGPTQNEHDSTDHLGVETVEPQKVSISWKKDFDKVNRRMKRACRKAVKSQTFYWLIIVLVFLNTVVLASEHYRQPEWLDHFQEYGNAFFVALFTLEMLVKMYSLGLQGYFVSLFNRFDCFVVIGSISEMVLTKSEVMPPLGISVLRCVRLLRVFKVTKYWRSLSNLVASLLNSIQSIASLLLLLFLFIMIFALLGMQVFGGKFNYDPVEEKDRHNFDCFWQALLTVFQILTGEDWNAVMYEGIKAYGGAGTVGIVACIYFIILFICGNYILLNVFLAIAVDNLADAESLTNIDKEEGACEEKEESMVAIEGVQGDTDDEYIHDDEAYTTDNSEREYEETGSEGDPQDEIEEEEEEELDENELEDRVEEEQERDEDMEMMEGHQRNHIDGGKSEEEGKLVTARPRRISELNMPNQTPPIPNASSFFIFSPTNRFRVLCYKLSSSSTFGNIILVCIMLSSAMLAAEDPLDAVQSGFRNWLLSQFDVFFTGIFTLELFLKLVTYGLILHQGAFLRSAFNVLDMLVVCVSLVSMNLKSGSISVVKILRVFRVLRPLRAINRAKGLKHVVQCVIVAIKTIGNILLVTSLLQFMFAVMGVQMFKGKFFRCNDISKMTKEECQGTYLVFENRNYVVRDREWKRNDFHFDNVMKGMLTLFTVSTFEGWPGLLYVSIDSNAEDRGPITNFRPIVAAYYIIYIIIIAFFMVNIFVGFVIVTFQNEGEQEYKNCELDKNQRNCIEFALKAKPIRRYIPKHRIQYKVWWFVTSQPFEYAIFVLIMINTITLAMKYHNQSIEYSKALDMLNMLFTAVFALEFIFKLAAFRFKNYFGDAWNTFDFIIVLGSIIDIVVSQVNELKNQGSGMPRIHVVKESSIPSINFFRLFRVMRLVKLLSRGEGIRTLLWTFIKSFQALPYVALLILMLFFIYAVVGMQVFGKIAIDDNTPITRNNHFQTFPQAILVLFRSATGEAWQDIMMGVSPDSEVKCDKNYHEEVGEDSEGTCGSVLAFPYFISFYVLCSFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFIRLWSEYDPDAKGRIKHLDVVTLLRKISPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVLFNATLFAVVRTSLKIKTDGNIDDCNTELRAVIKKIWKRTSPKLLDQVVPPPGDPNEITVGKFYATFLIQDYFRRFKKRKEQELRQNDEQTHQMTLQAGLRTLHEAGPELKRAISGNLDDITAELDVPMHRRNHSLFGGVWSSIRRHGPNRHLHRHRKEPPPEAVGNHLSSLMQKEYGVGPLPLTPNLANGQPKEQIPMRPLILNGESEKIYQVLDNQKSNYPEMLGQIGLAFGCVNYLSAAGGSSRQRVHPEDDERAETIQPKISPLLASACTPTTEARTMTLYGYNAAARLPFAFSHGGRRSLRACRTAPAVAGTDSAGRGVVSLPGSPRGNSSSLPVVGSAESLVTRVLTEQGLGEYCDPEFVRNTSREMQEALEMTEEQMDRAAHQLMIHEKNLKQAQCQPTQVGDIVARKFHPFHQPTSMPPPACERL

Description

Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death.
Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. Encodes a dihydropyridine- and diltiazem-sensitive current in larval body wall muscle. Vital for embryonic development.
Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death (By similarity). MDL-alpha1 encodes a dihydropyridine- and diltiazem-sensitive current in larval body wall muscle.

Similarity

Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.

Keywords

Alternative splicing   Calcium   Calcium channel   Calcium transport   Complete proteome   Glycoprotein   Ion channel   Ion transport   Membrane   Metal-binding   Phosphoprotein   Reference proteome   Repeat   Transmembrane   Transmembrane helix   Transport   Voltage-gated channel  

Feature

chain  Voltage-dependent calcium channel type D subunit alpha-1
splice variant  In isoform B.

Uniprot

A0A2H1WBU8   A0A212F4Q3   A0A194PP78   A0A3S2TK45   A0A2S1ZNL4   A0A336KLA4   + More
A5YW88   Q16QJ2   A0A0P6IY66   A0A182J4Y3   A0A0Q9WRS5   A0A182N8Y2   A0A084W5P2   A0A182RAG6   A0A0J9R317   A0A0R1DSB5   A0A0R1DV93   A0A336MGI3   A0A336MCG2   A0A336KKI5   Q24270-3   A0A1B6MRB3   A0A336MHW1   M9PD04   A0A336MC97   A0A1B6LPL5   A0A1W4VY04   A0A1B6MJ45   A0A1B6KE01   A0A1B6L2C7   B3MKY4   A0A182VSQ9   A0A0R1DN16   A0A2A4JH62   A0A0J9R2K5   A0A0J9R321   A0A1A9ZAA4   A0A2H1V5W4   A0A1I8NY94   A0A1I8NYA2   A0A1I8NWX6   A0A1A9W1K3   Q25452   A0A2A4JHK9   A0A0J9R2K9   T1GVR3   A0A2S1WM49   A0A0V1ME06   A0A0V1MD94   A0A0N5DJ56   A0A182MQB5   A0A0V1A834   A0A0V1A6X9   A0A3P7GHT0   A0A0V1BDZ5   H9JV40  

Pubmed

22118469    26354079    17510324    26999592    17994087    24438588    + More
22936249    17550304    7869089    10471707    10731132    12537572    12537569    9502794    9539432    12537568    12537573    12537574    16110336    17569856    17569867    8313972    19121390   

EMBL

ODYU01007597    SOQ50517.1    AGBW02010326    OWR48711.1    KQ459597    KPI95241.1    + More
RSAL01000085    RVE48330.1    MF359245    AWK26948.1    UFQS01000565    UFQT01000565    SSX05001.1    SSX25363.1    EF595743    ABQ88369.1    CH477747    EAT36648.1    GDUN01001113    JAN94806.1    CH963913    KRF98665.1    ATLV01020677    KE525304    KFB45536.1    CM002910    KMY90461.1    CM000157    KRJ98658.1    KRJ98662.1    UFQT01000900    SSX27913.1    SSX27916.1    SSX04999.1    SSX25361.1    U00690    AE014134    AY058268    GEBQ01001497    JAT38480.1    SSX27917.1    AGB93019.1    SSX27915.1    GEBQ01014334    JAT25643.1    GEBQ01004055    JAT35922.1    GEBQ01030306    JAT09671.1    GEBQ01022182    JAT17795.1    CH902620    EDV30642.2    KRJ98660.1    NWSH01001536    PCG70924.1    KMY90457.1    KMY90463.1    ODYU01000836    SOQ36207.1    Z31723    PCG70923.1    KMY90462.1    CAQQ02090988    CAQQ02090989    CAQQ02090990    CAQQ02090991    MG973401    AWJ68254.1    JYDO01000127    KRZ69843.1    KRZ69841.1    AXCM01000634    JYDQ01000023    KRY20601.1    KRY20599.1    UYWW01012467    VDM21225.1    JYDH01000055    KRY35332.1    BABH01026241    BABH01026242   

Proteomes

UP000007151    UP000053268    UP000283053    UP000008820    UP000075880    UP000007798    + More
UP000075884    UP000030765    UP000075900    UP000002282    UP000000803    UP000192221    UP000007801    UP000075920    UP000218220    UP000092445    UP000095300    UP000091820    UP000095301    UP000015102    UP000054843    UP000046395    UP000075883    UP000054783    UP000270924    UP000054776    UP000005204   

PRIDE

Q24270    Q25452    H9JV40   

Pfam

PF16905   GPHH        + More
PF00520   Ion_trans
PF08763   Ca_chan_IQ
PF16885   CAC1F_C

Interpro

IPR031688   CAC1F_C        + More
IPR005446   VDCC_L_a1su       
IPR002077   VDCCAlpha1       
IPR031649   GPHH_dom       
IPR005821   Ion_trans_dom       
IPR027359   Volt_channel_dom_sf       
IPR014873   VDCC_a1su_IQ       
IPR000731   SSD       
IPR029033   His_PPase_superfam       

SUPFAM

SSF53254   SSF53254       

Gene 3D

1.20.120.350     3.40.50.1240    

ProteinModelPortal

A0A2H1WBU8   A0A212F4Q3   A0A194PP78   A0A3S2TK45   A0A2S1ZNL4   A0A336KLA4   + More
A5YW88   Q16QJ2   A0A0P6IY66   A0A182J4Y3   A0A0Q9WRS5   A0A182N8Y2   A0A084W5P2   A0A182RAG6   A0A0J9R317   A0A0R1DSB5   A0A0R1DV93   A0A336MGI3   A0A336MCG2   A0A336KKI5   Q24270-3   A0A1B6MRB3   A0A336MHW1   M9PD04   A0A336MC97   A0A1B6LPL5   A0A1W4VY04   A0A1B6MJ45   A0A1B6KE01   A0A1B6L2C7   B3MKY4   A0A182VSQ9   A0A0R1DN16   A0A2A4JH62   A0A0J9R2K5   A0A0J9R321   A0A1A9ZAA4   A0A2H1V5W4   A0A1I8NY94   A0A1I8NYA2   A0A1I8NWX6   A0A1A9W1K3   Q25452   A0A2A4JHK9   A0A0J9R2K9   T1GVR3   A0A2S1WM49   A0A0V1ME06   A0A0V1MD94   A0A0N5DJ56   A0A182MQB5   A0A0V1A834   A0A0V1A6X9   A0A3P7GHT0   A0A0V1BDZ5   H9JV40  

PDB

5GJW     E-value=0,     Score=2800

KEGG

101735743    K04851 voltage-dependent calcium channel L type alpha-1D | (RefSeq) muscle calcium channel subunit a

GO

GO:0005891   GO:0005245   GO:0034765   GO:0016021   GO:0005244   GO:0005262   GO:0016322   GO:0042045   GO:0019722   GO:0006816   GO:0016324   GO:0070588   GO:0046872   GO:0006936   GO:0016323   GO:0005216   GO:0006811   GO:0016020   GO:0043565   GO:0003677   GO:0003707   GO:0006281   GO:0006259   GO:0055085  

Subcellular location

Membrane  

Length:

1943

Number of predicted TMHs:

18

Exp number of AAs in TMHs:

430.895879999999

Exp number, first 60 AAs:

0.03414

Total prob of N-in:

0.37439

outside

1  -  85

TMhelix

86  -  108

inside

109  -  119

TMhelix

120  -  142

outside

143  -  151

TMhelix

152  -  174

inside

175  -  214

TMhelix

215  -  237

outside

238  -  326

TMhelix

327  -  349

inside

350  -  458

TMhelix

459  -  476

outside

477  -  490

TMhelix

491  -  513

inside

514  -  583

TMhelix

584  -  606

outside

607  -  656

TMhelix

657  -  679

inside

680  -  846

TMhelix

847  -  869

outside

870  -  888

TMhelix

889  -  911

inside

912  -  973

TMhelix

974  -  996

outside

997  -  1096

TMhelix

1097  -  1119

inside

1120  -  1161

TMhelix

1162  -  1184

outside

1185  -  1203

TMhelix

1204  -  1223

inside

1224  -  1235

TMhelix

1236  -  1253

outside

1254  -  1310

TMhelix

1311  -  1330

inside

1331  -  1406

TMhelix

1407  -  1429

outside

1430  -  1943

 

 

Pi

213.9461

Theta

167.134326

Tajima's D

0.795251

CLR

0.369378

CSRT

0.60141992900355

Interpretation

Uncertain