Silkworm Genome Informatics Database

Gene

KWMTBOMO15865 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013351

Annotation

PREDICTED:_U3_small_nucleolar_ribonucleoprotein_protein_MPP10_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr27(-):333441-335501 View in EpiBrowser

Full name

U3 small nucleolar ribonucleoprotein protein MPP10

Location in the cell

Nuclear Reliability : 4.692

CDS

ATGGCTTGCATAGATTTGGAAGGTATACTTAATAAATTCAACAGTTACACTGATAAACCAGTAAAATTTTTGTCTGTGCAAAAAGAGTTGAAAGAGGACCTAAAAAGGTTTGTAAAATCGGTATACGATTACACGAAATCTCAGGAGAAGAGCGATAAGAAGAAGAAGAGTGGGGCCTTAAAGGAATTAATTGTGGAAGATTTTGATGAGGAGCAGATATGGCAACAGATAGAGCTGCAGAACTCCCAACGCTGGGACCAGATAGTGTGGGAGGTGGCCAACTCTATGAGCGCAAATAACGAATTAGTATTTCCCATAAAAGTTGCTAAAGAAAAACCCAAGGAGATCTTACCTCATGGTGTTGAACCTATGGTAGAAGATGATGGAGAAAAAGTATCTGAGAATATTGAACTTGAGCATGGCAGATCTCAACGAGTTCAAAGTGATGTACCAAAAAAGAAAACCAGGCCTTCGCAGGTGGATGACAAGTTTTTCAAACTTTCCGAAATGGAAGAGTTTTTATTGAAAGAAGAAAAAAAACAAACAAATAGAACCAAAGGTGATCGTGACAGTGATGAGGAGTCTATAGATTTCTTCGAAGATGACAATGAGGAGGAGGAAGATGAAAATGTCATGTATAATGACTTTTTTGATCAAGATGGTGCTGAAGATGGGGACTATGATATGGACCAGGAAATAGATGATTCAGTTGAAGATGAAGAAGAGGAGGTTACAGAGCAGTCAAATAAAAAAAAGCAAGTCCGATTCTCACAACCATCTATTGATGATTCAGATGACAATTCAGTTGATAGTAACAAAAATAATAAAGTAAATAGTAAAACAATTGAAGAAAAACAGTCTGAGTTTGAGCAACGCCAGCAAAGACTAAAACAACACATTCAACGACTAGAGGAAAAGACTTTGAAAGAAGCCTCTTGGCAACTCAAAGGTGAAGTGGATGCATCGAAACGTCCTCAAAACTCACTTCTTCAAGAAGTTGTGGATTTTGATTTAACAACACGTCCAGCTCCAATTATAACTGAACAGACCACAGTTTCTTTAGAAGACATAATTAAACGTAGAATCAAAGATAAAGCTTGGGATGATGTTGTTAAAAAAGAAAAGCCAGTTGATGACCAACTGGCATTCCGAAAGAAGGAAATTCTAGATCATTCAAAGAGCAAGCTAAGCTTAGCTCAAGTCTATGAGGCGGAGTACTTAAAACAGAAACAGGCAGCATCAGGAGAGATTGTAGAAGAAAAAGAACCAGAAGCACATAAAGAAATTCGAGAAGCCATGTCACAGTTATTCTCAAAATTAGATGCACTGAGTCATTATCACTACACACCGAAAGCTGTACAGCCTGAAGTGACAATTGTATCAAATACTCCAGCAATATCGATGGAGGAGGTGGCTCCAGTAGCTACCAGTGATGCAGCGCTATTGGCTCCCGAAGAAATTAAGAGAAAACAGAAAGGAGATCTTATTAGCAAAGAAGAGAGAACAAAGACAGACAAAAATAGAGAAAGAAGGAAAAAGAAGAAATTGCAGAAGAAAAAAGGACAGGTTACAAAAGTAACAGACAGCAGGAATACTACAAAGAGTGTAGAAGTCAGTGACAAATCAGTGAAGACTTCAAAAGCATTCTTTGAGCAGTTAAATGATAACACCAAGAGCTTGATTAAGAAAAATAAATTAATTAAGAATAAGGGACAATAA

Protein

MACIDLEGILNKFNSYTDKPVKFLSVQKELKEDLKRFVKSVYDYTKSQEKSDKKKKSGALKELIVEDFDEEQIWQQIELQNSQRWDQIVWEVANSMSANNELVFPIKVAKEKPKEILPHGVEPMVEDDGEKVSENIELEHGRSQRVQSDVPKKKTRPSQVDDKFFKLSEMEEFLLKEEKKQTNRTKGDRDSDEESIDFFEDDNEEEEDENVMYNDFFDQDGAEDGDYDMDQEIDDSVEDEEEEVTEQSNKKKQVRFSQPSIDDSDDNSVDSNKNNKVNSKTIEEKQSEFEQRQQRLKQHIQRLEEKTLKEASWQLKGEVDASKRPQNSLLQEVVDFDLTTRPAPIITEQTTVSLEDIIKRRIKDKAWDDVVKKEKPVDDQLAFRKKEILDHSKSKLSLAQVYEAEYLKQKQAASGEIVEEKEPEAHKEIREAMSQLFSKLDALSHYHYTPKAVQPEVTIVSNTPAISMEEVAPVATSDAALLAPEEIKRKQKGDLISKEERTKTDKNRERRKKKKLQKKKGQVTKVTDSRNTTKSVEVSDKSVKTSKAFFEQLNDNTKSLIKKNKLIKNKGQ

Description

Involved in nucleolar processing of pre-18S ribosomal RNA.

Similarity

Belongs to the MPP10 family.

Uniprot

H9JUY8 S4NIQ2 A0A3S2PDL2 A0A2A4J954 A0A212EKA4 A0A2S2R001 + More

Pubmed

19121390 23622113 22118469

EMBL

BABH01037456 BABH01037457 GAIX01013974 JAA78586.1 RSAL01000085 RVE48338.1 + More
NWSH01002557 PCG67990.1 AGBW02014311 OWR41895.1 GGMS01013917 MBY83120.1

Proteomes

UP000005204 UP000283053 UP000218220 UP000007151

PRIDE

H9JUY8

Pfam

PF04006 Mpp10

Interpro

IPR012173 Mpp10

ProteinModelPortal

H9JUY8 S4NIQ2 A0A3S2PDL2 A0A2A4J954 A0A212EKA4 A0A2S2R001 + More

PDB

5WLC E-value=7.38816e-27, Score=301

KEGG

101745671 K14559 U3 small nucleolar RNA-associated protein MPP10 | (RefSeq) U3 small nucleolar ribonucleoprote

PATHWAY

03008 Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)

GO

GO:0034457 GO:0005732 GO:0006364 GO:0005634 GO:0006355 GO:0005622 GO:0005216 GO:0006811 GO:0016020 GO:0006281 GO:0006259

PANTHER

PTHR17039

Subcellular location

Length:

572

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00032

outside

1 - 572

Pi

196.981517

Theta

188.077812

Tajima's D

0.156249

CLR

0.741314

CSRT

0.414879256037198

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics