Gene

KWMTBOMO15864

Pre Gene Modal

BGIBMGA013352

Annotation

PREDICTED:_nuclear_factor_1_B-type_[Bombyx_mori]

Location

Bomo_Chr27(-):253631-265641      View in EpiBrowser

Full name

Nuclear factor 1      

Transcription factor

MH1

Location in the cell

Nuclear   Reliability : 4.107

CDS

ATGTTATACGGCTATATACGAAAGGACGAGTTCCATCCGTTCATAGAGGCCCTAATGCCTTTCGTTAAATCGTTTTCGTACACGTGGTTCAATTTACAAGCGGCGAAACGGAAATATTACAAAAAACACGAGAAACGGATGAGTCTTGAGGAGGAGCGGCATACTAAATATGAATTACAGAATGAAAAAGCAGAAGTCAAACAAAAATGGGCATCCCGGTTACTGGGAAAGCTTCGGAAGGACATCACCCAAGACTGCAGAGAGGACTTCGTGCTCAGCATCACGGGCAAGAGGCCGGCGGTCTGTGTCCTCTCCAACCCGGACCAGAAGGGCAAGATGCGGAGGATAGACTGCTTGAGGCAGGCCGATAAGGTGTGGAGACTAGATCTGGTCATGGTGATACTCTTCAAAGCCATACCCTTGGAGAGCACGGACGGAGAGCGACTAGAGAAGCACCCTGAGTGTACGCAGCCAGGTCTCTGCGTGAACCCGTACCACATCAACGTCTCTGTCCGCGAGCTGGACCTCTACCTCGCAAACTTCATCAACAGCTATGATATCCTAAGTGGGTCCATCTCTCCTCATCCACCTAGAGACAAAGAGAACGAACACGAGGCTAAGAACAAAGGTTATAGTCACAATCCATACAATGGTGTTATTTGCAACGACATAATACTAGCGACGGGTGTCTTCTCTTCTAAGGAACTATGGAAGTTGTCTAAAGCGTCAATCCTGCAAGAGACCGGTTCTGAATCACCTGGTGGTTCCGGTGGTGGTATCAAGTTGGAATCGGGATATTACTGCGGGTACAATAGTCCAGCACCACCCACCTTCGATCCTCCGGCGGAGAGGTCCACTCCGTCGACCATGCTTGTCGGGCAGTGCTTTAGTATCCCCCACAGCTCAGCGGGTCTGAGTTCGGCCCAGTCGCCGCTGGTGCCGTCCAACACGATATTCTACCAGCCGCCGCCCGCGGACACGCACCCCAATACATCAGAAGCCTTAACGAGTCATCATTCGAGCGCGAAGTACGAGACGCCGCAGGACTCTCTCGGGGACTTCGTGACCTTCGTCTGCCAGGAGCCAACAGATGTTGCTCAATTACAGGTTCATAGCTTGTCGAGGAGTCCTAAGCCGGCGTACTTCAGCAGCTCGATGCTACCCCCACCCCCCCTACCCCCGATGGCGAGACCAGTAGCTATCATTAGATCGACAGGTATTTTTTGA

Protein

MLYGYIRKDEFHPFIEALMPFVKSFSYTWFNLQAAKRKYYKKHEKRMSLEEERHTKYELQNEKAEVKQKWASRLLGKLRKDITQDCREDFVLSITGKRPAVCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKAIPLESTDGERLEKHPECTQPGLCVNPYHINVSVRELDLYLANFINSYDILSGSISPHPPRDKENEHEAKNKGYSHNPYNGVICNDIILATGVFSSKELWKLSKASILQETGSESPGGSGGGIKLESGYYCGYNSPAPPTFDPPAERSTPSTMLVGQCFSIPHSSAGLSSAQSPLVPSNTIFYQPPPADTHPNTSEALTSHHSSAKYETPQDSLGDFVTFVCQEPTDVAQLQVHSLSRSPKPAYFSSSMLPPPPLPPMARPVAIIRSTGIF

Description

Recognizes and binds the palindromic sequence 5'-TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication.

Subunit

Binds DNA as a homodimer.

Similarity

Belongs to the CTF/NF-I family.

Uniprot

H9JUY9   A0A2A4J1F4   A0A2A4J301   A0A2A4J340   A0A2A4J2T0   A0A2A4J351   + More
A0A2H1W5W7   A0A0N0PCV7   A0A194PP70   A0A0L7LPP8   A0A1W4WJL8   A0A1W4WKK1   A0A1W4WJL3   A0A1Y1N493   A0A1Y1N7K5   D6W8F2   N6T9B3   A0A1B6JCB9   A0A1B6GS96   A0A1B6K198   A0A1B6H2C3   A0A1B6CGE6   X1WJN8   A0A1B6EH04   A0A1J1J9P0   A0A1B6LVR4   A0A1B6GL89   A0A0K8SRB8   A0A1B6G839   A0A1B6JW54   A0A1B6M9R2   A0A195C3F0   A0A1B6F7Q4   A0A0A9WEI4   A0A1B6J430   A0A1B6BYV1   A0A151WGI1   A0A146LGC7   A0A067RDG1   A0A154P719   A0A2S2PHH2   A0A026WS15   A0A2S2NT65   A0A1B6DXH0   E2AW03   A0A1W4W9I4   A0A1W4WKU2   A0A1B6L878   A0A0T6B0N5   A0A1B6KH13   W8BNL0   A0A336KYY0   K7J354   A0A0P8XII8   B3N0M1   E2C4L7  

Pubmed

19121390    26354079    26227816    28004739    18362917    19820115    + More
23537049    26823975    25401762    24845553    24508170    30249741    20798317    24495485    20075255    17994087    18057021   

EMBL

BABH01037450    BABH01037451    NWSH01003786    PCG65821.1    PCG65820.1    PCG65822.1    + More
PCG65824.1    PCG65823.1    ODYU01006515    SOQ48427.1    KQ460466    KPJ14625.1    KQ459597    KPI95231.1    JTDY01000369    KOB77498.1    GEZM01014005    JAV92228.1    GEZM01014006    JAV92226.1    KQ971307    EFA10944.1    APGK01047275    KB741077    KB632432    ENN74318.1    ERL95545.1    GECU01010928    JAS96778.1    GECZ01004475    JAS65294.1    GECU01002492    JAT05215.1    GECZ01000946    JAS68823.1    GEDC01024731    JAS12567.1    ABLF02027949    ABLF02027951    ABLF02027953    ABLF02027954    GEDC01000082    JAS37216.1    CVRI01000074    CRL08238.1    GEBQ01012204    JAT27773.1    GECZ01006591    JAS63178.1    GBRD01009907    GDHC01015066    JAG55917.1    JAQ03563.1    GECZ01011151    JAS58618.1    GECU01004553    JAT03154.1    GEBQ01007305    JAT32672.1    KQ978350    KYM94716.1    GECZ01023618    JAS46151.1    GBHO01037798    JAG05806.1    GECU01013780    JAS93926.1    GEDC01030870    JAS06428.1    KQ983167    KYQ46931.1    GDHC01011438    JAQ07191.1    KK852708    KDR17984.1    KQ434819    KZC06920.1    GGMR01016248    MBY28867.1    KK107119    QOIP01000009    EZA58817.1    RLU19076.1    GGMR01007613    MBY20232.1    GEDC01006938    JAS30360.1    GL443213    EFN62425.1    GEBQ01020243    JAT19734.1    LJIG01016297    KRT81023.1    GEBQ01029219    JAT10758.1    GAMC01011594    JAB94961.1    UFQS01000680    UFQT01000680    SSX06160.1    SSX26516.1    CH902641    KPU74698.1    EDV33719.1    KPU74699.1    GL452536    EFN77097.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000037510    UP000192223    + More
UP000007266    UP000019118    UP000030742    UP000007819    UP000183832    UP000078542    UP000075809    UP000027135    UP000076502    UP000053097    UP000279307    UP000000311    UP000002358    UP000007801    UP000008237   

PRIDE

H9JUY9   

Pfam

PF00859   CTF_NFI        + More
PF10524   NfI_DNAbd_pre-N
PF03165   MH1

Interpro

IPR020604   CTF/NFI_DNA-bd-dom        + More
IPR003619   MAD_homology1_Dwarfin-type       
IPR000647   CTF/NFI       
IPR019548   CTF/NFI_DNA-bd_N       
IPR000408   Reg_chr_condens       

ProteinModelPortal

H9JUY9   A0A2A4J1F4   A0A2A4J301   A0A2A4J340   A0A2A4J2T0   A0A2A4J351   + More
A0A2H1W5W7   A0A0N0PCV7   A0A194PP70   A0A0L7LPP8   A0A1W4WJL8   A0A1W4WKK1   A0A1W4WJL3   A0A1Y1N493   A0A1Y1N7K5   D6W8F2   N6T9B3   A0A1B6JCB9   A0A1B6GS96   A0A1B6K198   A0A1B6H2C3   A0A1B6CGE6   X1WJN8   A0A1B6EH04   A0A1J1J9P0   A0A1B6LVR4   A0A1B6GL89   A0A0K8SRB8   A0A1B6G839   A0A1B6JW54   A0A1B6M9R2   A0A195C3F0   A0A1B6F7Q4   A0A0A9WEI4   A0A1B6J430   A0A1B6BYV1   A0A151WGI1   A0A146LGC7   A0A067RDG1   A0A154P719   A0A2S2PHH2   A0A026WS15   A0A2S2NT65   A0A1B6DXH0   E2AW03   A0A1W4W9I4   A0A1W4WKU2   A0A1B6L878   A0A0T6B0N5   A0A1B6KH13   W8BNL0   A0A336KYY0   K7J354   A0A0P8XII8   B3N0M1   E2C4L7  

KEGG

105841689    K09172 nuclear factor I, invertebrate | (RefSeq) nuclear factor 1 B-type

GO

GO:0006260   GO:0005634   GO:0003677   GO:0003700   GO:0000981   GO:0000122   GO:0045944   GO:0006355   GO:0005622   GO:0005216   GO:0006811   GO:0016020   GO:0006281   GO:0006259  

PANTHER

PTHR11492  

Subcellular location

Nucleus  

Length:

408

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.885459999999999

Exp number, first 60 AAs:

0.84829

Total prob of N-in:

0.03200

outside

1  -  408

 

 

Pi

275.244939

Theta

193.042952

Tajima's D

1.472027

CLR

0

CSRT

0.777261136943153

Interpretation

Uncertain