Silkworm Genome Informatics Database

Gene

KWMTBOMO15862

Pre Gene Modal

BGIBMGA013353

Annotation

PREDICTED:_homeobox_protein_onecut_[Bombyx_mori]

Location

Bomo_Chr27(-):222260-242161 View in EpiBrowser

Full name

One cut domain family member

Transcription factor

CUT

Location in the cell

Nuclear Reliability : 4.302

CDS

ATGATGTCGGAACTGACATTAAAAGTGTTTGTAGACAATCATTCTTATCAAGTGGAGTTGGAGAATGAAGAAAACACAGCCGGCTACGACGGAAATGACTATTACATCGAGTCGGACGAGGAGTGCGGGCCGGGCCGGGTGCGTCGCGCAGGCGTGGTCCAGTCGGGCGCGCGACCCCGCAGCCGTCGGCCGCGTGCCATGGACGAGGGTCGAGTCAGAGACCGAGCGCCGCTCACGGTCATAGTGGCTCCCAGTACCGCCTCGCCACCGAGACTGTCTCCCGCCGACCTCCTGCCCGATGGAGATGCAGCCTTCCATCCTCTCTCCGCCGTCAACGGCCGCCTCACGCCGCCCGGGCTCGAGCCTGCTTCGTACGCGACCCTCACGCCGCTTCTACCCTTGCCACCCATCAGCACCGTCTCCGATAAGTTCGCATACCACGCTGGCGGCACCTTCACGGTCATCCAGCAGCAGCCTTCGTATGCGTCGCTGTCTCCGGCGGCCTACAATGAGCCCCTGTCGCCACAGTCGGCGTACAGCCGACGGAGCGTGTCCCCCAGCTCGTTCGAGCGACGGTCGCCGACGCCGCCGCTGCCGAGTCCGGGGCTGGACCTCAACGCTGCGCTGATGGCACGCGAGGATCAACAACAACAGCACCAGCAGCAAGTCATTCAGAATGACACTGAAGAGATAAACACTAAAGAGTTGGCGCAGAGGATAAGCGGGGAATTGAAGCGGTACTCGATCCCCCAGGCGATTTTTGCGCAGAGGGTGCTGTGTCGGTCGCAGGGCACTCTTAGTGACCTCCTGCGGAATCCCAAGCCCTGGTCCAAGCTCAAGTCGGGTCGGGAGACCTTTAGGCGGATGTGGAAGTGGCTGCAGGAGCCAGAGTTCCAGAGGATGTCCGCGCTCAGGCTAGCAGATACGCCAAACCAGCATCAAACGATAAAAGGCGACAATGTAAACAGCATGCCTCAGCAGCCATACTGCCAGCCCCGAGAGTACCAGGGTGCTCCGCCCCCGGCTCAATGCCCCACAATGTACCCTCCGGGGCCTCCGCCACCCTGGGAAACGCCATATGAACCAGCCGGGGACGTTTCTTGCTTCGGCCCAGATTCCACAGAGAGGCAGCATGTTGTATATCCCAGGCTGCAAGCGCAAGGAGGACATGGGCTCGGATACCCTGCCTTCCCCGAAGAAGCCGCGTTTGGTTTTCACCGACCTCCAGCGGCGTACTCTACAAGCTATTTTTAA

Protein

MMSELTLKVFVDNHSYQVELENEENTAGYDGNDYYIESDEECGPGRVRRAGVVQSGARPRSRRPRAMDEGRVRDRAPLTVIVAPSTASPPRLSPADLLPDGDAAFHPLSAVNGRLTPPGLEPASYATLTPLLPLPPISTVSDKFAYHAGGTFTVIQQQPSYASLSPAAYNEPLSPQSAYSRRSVSPSSFERRSPTPPLPSPGLDLNAALMAREDQQQQHQQQVIQNDTEEINTKELAQRISGELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLADTPNQHQTIKGDNVNSMPQQPYCQPREYQGAPPPAQCPTMYPPGPPPPWETPYEPAGDVSCFGPDSTERQHVVYPRLQAQGGHGLGYPAFPEEAAFGFHRPPAAYSTSYF

Similarity

Belongs to the CUT homeobox family.

Uniprot

A0A2H1W5U2 A0A0L7LQ20 A0A194PVS5 A0A0N0PD50

Pubmed

26227816 26354079

EMBL

ODYU01006515 SOQ48428.1 JTDY01000369 KOB77499.1 KQ459597 KPI95230.1 + More
KQ460466 KPJ14626.1

Proteomes

UP000037510 UP000053268 UP000053240

Pfam

PF02376 CUT + More
PF00046 Homeodomain

Interpro

IPR010982   Lambda_DNA-bd_dom_sf        + More
IPR003350   CUT_dom
IPR009057   Homeobox-like_sf
IPR001356   Homeobox_dom

SUPFAM

SSF47413 SSF47413 + More
SSF46689 SSF46689

CDD

cd00086 homeodomain

ProteinModelPortal

A0A2H1W5U2 A0A0L7LQ20 A0A194PVS5 A0A0N0PD50

PDB

2D5V E-value=4.70067e-40, Score=414

KEGG

101745526 K08026 one cut domain, family member 1, hepatocyte nuclear factor 6 | (RefSeq) homeobox protein onec

GO

GO:0003677 GO:0005634 GO:0051260 GO:0005249 GO:0006813 GO:0008076 GO:0005216 GO:0006811 GO:0016020 GO:0006281 GO:0006259

Subcellular location

Nucleus

Length:

417

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00013

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00217

outside

1 - 417

Pi

215.67435

Theta

161.669742

Tajima's D

0.963889

CLR

0.170032

CSRT

0.650167491625419

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics