Gene

KWMTBOMO15861

Pre Gene Modal

BGIBMGA013355

Annotation

PREDICTED:_potassium_voltage-gated_channel_protein_Shal_isoform_X3_[Amyelois_transitella]

Location

Bomo_Chr27(-):212303-213581      View in EpiBrowser

Full name

Potassium voltage-gated channel protein Shal      

Alternative Name

Shaker cognate l
Shal2

Location in the cell

PlasmaMembrane   Reliability : 4.577

CDS

ATGGCGTCCGTCGCCGCCTGGCTGCCCTTCGCCAGAGCAGCAGCCATCGGGTGGGTCCCCATCGCGACCCATCCACTTCCGCCGCCGCCCGTGCCCAAGGACCGCCGCCGTGCCGAGGACGAGAAGCTCCTCATCAACGTCTCCGGACGACGCTTTGAGACTTGGCGGAACACTCTCGAGAAGTACCCGGACTCGCTGCTTGGTTCCTCAGAACGCGAATTCTTTTACGACGAAGACAGCCGAGAGTACTTTTTTGACAGAGACCCGGACATATTCAGGCATATTCTGAATTATTACCGCACTGGTAAACTCCACTACCCCAAACACGAGTGCCTCACGGGCTACGATGAGGAACTCGCGTTCTTCGGCATCCTTCCCGATGTCATCGGTGACTGTTGTTACGAAGACTACAGAGACAGGAAGAGAGAAAATGCCGAACGTCTTATGGATGACAAGCTTAGTGAAGCAGGCGACCAGAGTCTGCCTCAGCTCACGGACTTACGACAAAAAATGTGGAGGGCCTTCGAGAACCCCCACACGTCAACGGCTGCCCTCGTGTTTTACTATGTGACTGGATTTTTCATTGCCGTCTCCGTGATGGCTAACGTAGTGGAGACGGTACCGTGCGGACACCGACCTGGCCGGGCCGGGACCCTGCCGTGCGGCGAACGCTACAAGATAGTGTTCTTCTGCCTGGACACGGCGTGCGTGATGATCTTCACGGCGGAGTACCTGCTGCGACTGTTCGCGGCCCCGGACCGCTGCAAGTTCGTTCGCTCGGTGATGTCCATCATCGACGTGGTCGCGATCCTGCCGTACTACATCGGCCTGGGTATCACTGACAACGACGACGTCTCGGGTGCGTTTGTCACCCTCAGAGTGTTCCGAGTGTTTCGGATCTTCAAGTTCTCGCGGCACTCCCAAGGACTAAGGATCCTGGGCTACACGCTCAAGTCGTGCGCCAGCGAGCTCGGCTTCCTGGTGTTCTCGCTCGCGATGGCCATCATTATATTCGCGACAGTGATGTTCTACGCGGAGAAGAACGAGCAGGACACAAACTTCACGTCGATTCCGGCCGCCTTCTGGTACACCATCGTCACGATGACCACGCTCGGGTAA

Protein

MASVAAWLPFARAAAIGWVPIATHPLPPPPVPKDRRRAEDEKLLINVSGRRFETWRNTLEKYPDSLLGSSEREFFYDEDSREYFFDRDPDIFRHILNYYRTGKLHYPKHECLTGYDEELAFFGILPDVIGDCCYEDYRDRKRENAERLMDDKLSEAGDQSLPQLTDLRQKMWRAFENPHTSTAALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGTLPCGERYKIVFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAILPYYIGLGITDNDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNEQDTNFTSIPAAFWYTIVTMTTLG

Subunit

Heterotetramer of potassium channel proteins (By similarity). Interacts (via C-terminal dendritic targeting motif) with SIDL.

Miscellaneous

The segment S4 is probably the voltage-sensor and is characterized by a series of positively charged amino acids at every third position.

Similarity

Belongs to the potassium channel family.
Belongs to the potassium channel family. D (Shal) (TC 1.A.1.2) subfamily. Shal sub-subfamily.

Keywords

Alternative splicing   Cell projection   Complete proteome   Glycoprotein   Ion channel   Ion transport   Membrane   Potassium   Potassium channel   Potassium transport   Reference proteome   Transmembrane   Transmembrane helix   Transport   Voltage-gated channel  

Feature

chain  Potassium voltage-gated channel protein Shal
splice variant  In isoform A.

Uniprot

A0A194PR55   A0A212EN18   A0A0N1IHR9   A0A2A4J3B2   A0A2H1W5S3   A0A0L7LCB6   + More
A0A3Q0IM34   A0A2R7WQX1   T1HW31   A0A2H8U287   A0A2S1ZNL5   B4J1C1   A0A0A1XDD8   A0A0A1XKY8   A0A1I8P3U8   A0A1I8P3Q6   A0A0K8UEX6   A0A034VF95   B4KZC6   A0A0L0C821   B4LCL8   A0A0Q9WKS9   A0A1B0FMG4   A0A0Q9XCX0   A0A1A9XLY8   A0A1A9UT12   A0A1B0B626   J9JVQ3   A0A1I8P3U0   A0A0A1XA98   A0A1A9Z0E7   A0A1A9X5N2   A0A0Q5U5J9   P17971   A0A1W4UT45   A0A0Q9WJQ5   A0A1I8MQI2   A0A0Q9XNA3   M9PFP1   A0A0P8YBQ8   A0A1W4URC2   A0A0Q5UHC6   P17971-1   A0A1W4UE14   A0A0Q9WUN0   B3M701   B4IIM4   B3NIF3   W8C343   A0A2J7PXU2   A0A067QL12   B4MXL6   A0A0M4EIW8   A0A0R3P720   K7IY22   E0VBM4   A0A3B0JV30   Q29DG1   B4H997   A0A1W4WRP6   A0A0R3P755   A0A154PM26   A0A195BA78   A0A2A3ED36   A0A195ETU0   A0A087ZTU2   V9IEP6   A0A195E528   A0A1L8DF39   A0A195D0I0   A0A151X609   A0A0L7RBH1   V9IF76   A0A0N0BDX4   A0A310SCK9   D6W6N1   A0A0C9QGR5   A0A026WNN5   A0A3L8DV17   A0A158NWY3   E9IQT6   N6TY00   A0A0T6AZF0   E2A858   A0A0J7KX79   A0A0J9RY24   A0A182R109   A0A182NJP2   A0A182L399   Q7QIS7   W5JNE5   A0A182Y273   A0A182RXN9   Q173M3   A0A084WJW3   A0A182J361   A0A182MFM1   A0A182P7Q5   A0A182VIS1   A0A182K028  

Pubmed

26354079    22118469    26227816    17994087    25830018    25348373    + More
26108605    18057021    2333511    2336395    10731132    12537572    20550966    25315136    12537568    12537573    12537574    16110336    17569856    17569867    24495485    24845553    15632085    20075255    20566863    18362917    19820115    24508170    30249741    21347285    21282665    23537049    20798317    22936249    20966253    12364791    14747013    17210077    20920257    23761445    25244985    17510324    24438588   

EMBL

KQ459597    KPI95229.1    AGBW02013760    OWR42869.1    KQ460466    KPJ14627.1    + More
NWSH01003471    PCG66226.1    ODYU01006515    SOQ48431.1    JTDY01001805    KOB72836.1    KK855317    PTY21967.1    ACPB03001681    ACPB03001682    GFXV01007813    MBW19618.1    MF359242    AWK26945.1    CH916366    EDV97990.1    GBXI01005809    JAD08483.1    GBXI01002680    JAD11612.1    GDHF01027171    GDHF01012288    GDHF01003580    JAI25143.1    JAI40026.1    JAI48734.1    GAKP01017790    GAKP01017788    GAKP01017786    JAC41164.1    CH933809    EDW18952.1    JRES01000778    KNC28395.1    CH940647    EDW69881.1    KRF84625.1    KRF84627.1    KRF84629.1    KRF84631.1    KRF84632.1    KRF84630.1    CCAG010017555    KRG06431.1    JXJN01008949    ABLF02039740    ABLF02039755    ABLF02039756    ABLF02044019    GBXI01006471    JAD07821.1    CH954178    KQS44245.1    KQS44246.1    M32660    AE014296    BT024203    KRF84626.1    KRG06430.1    AGB94748.1    CH902618    KPU78821.1    KQS44243.1    KQS44244.1    KRF84628.1    EDV40866.1    CH480844    EDW49795.1    EDV52378.1    GAMC01010327    GAMC01010326    GAMC01010323    JAB96229.1    NEVH01020852    PNF21151.1    KK853224    KDR09686.1    CH963876    EDW76785.1    CP012525    ALC44765.1    CH379070    KRT08970.1    DS235033    EEB10780.1    OUUW01000002    SPP76601.1    EAL30453.2    CH479227    EDW35321.1    KRT08971.1    KQ434977    KZC12902.1    KQ976542    KYM81130.1    KZ288291    PBC29202.1    KQ981965    KYN31665.1    JR040403    AEY59117.1    KQ979608    KYN20290.1    GFDF01009114    JAV04970.1    KQ977004    KYN06423.1    KQ982482    KYQ55835.1    KQ414617    KOC68214.1    JR040402    AEY59116.1    KQ435851    KOX70822.1    KQ778189    OAD52013.1    KQ971307    EFA10968.1    GBYB01013763    JAG83530.1    KK107144    EZA57610.1    QOIP01000003    RLU24320.1    ADTU01028805    GL764900    EFZ17091.1    APGK01047179    KB741077    KB632384    ENN74185.1    ERL94320.1    LJIG01022461    KRT80456.1    GL437497    EFN70370.1    LBMM01002395    KMQ94879.1    CM002912    KMZ00564.1    AXCN02000434    AAAB01008807    EAA03996.2    ADMH02000859    ETN64838.1    CH477421    EAT41230.1    ATLV01024081    KE525348    KFB50507.1    AXCM01007912   

Proteomes

UP000053268    UP000007151    UP000053240    UP000218220    UP000037510    UP000079169    + More
UP000015103    UP000001070    UP000095300    UP000009192    UP000037069    UP000008792    UP000092444    UP000092443    UP000078200    UP000092460    UP000007819    UP000092445    UP000091820    UP000008711    UP000000803    UP000192221    UP000095301    UP000007801    UP000001292    UP000235965    UP000027135    UP000007798    UP000092553    UP000001819    UP000002358    UP000009046    UP000268350    UP000008744    UP000192223    UP000076502    UP000078540    UP000242457    UP000078541    UP000005203    UP000078492    UP000078542    UP000075809    UP000053825    UP000053105    UP000007266    UP000053097    UP000279307    UP000005205    UP000019118    UP000030742    UP000000311    UP000036403    UP000075886    UP000075884    UP000075882    UP000007062    UP000000673    UP000076408    UP000075900    UP000008820    UP000030765    UP000075880    UP000075883    UP000075885    UP000075903    UP000075881   

PRIDE

P17971    M9PFP1   

Pfam

PF00520   Ion_trans        + More
PF02214   BTB_2
PF11601   Shal-type
PF11879   DUF3399

Interpro

IPR000210   BTB/POZ_dom        + More
IPR003968   K_chnl_volt-dep_Kv       
IPR011333   SKP1/BTB/POZ_sf       
IPR028325   VG_K_chnl       
IPR003975   K_chnl_volt-dep_Kv4       
IPR005821   Ion_trans_dom       
IPR027359   Volt_channel_dom_sf       
IPR003131   T1-type_BTB       
IPR021645   Shal-type_N       
IPR024587   K_chnl_volt-dep_Kv4_C       

SUPFAM

SSF54695   SSF54695       

Gene 3D

1.20.120.350    

ProteinModelPortal

A0A194PR55   A0A212EN18   A0A0N1IHR9   A0A2A4J3B2   A0A2H1W5S3   A0A0L7LCB6   + More
A0A3Q0IM34   A0A2R7WQX1   T1HW31   A0A2H8U287   A0A2S1ZNL5   B4J1C1   A0A0A1XDD8   A0A0A1XKY8   A0A1I8P3U8   A0A1I8P3Q6   A0A0K8UEX6   A0A034VF95   B4KZC6   A0A0L0C821   B4LCL8   A0A0Q9WKS9   A0A1B0FMG4   A0A0Q9XCX0   A0A1A9XLY8   A0A1A9UT12   A0A1B0B626   J9JVQ3   A0A1I8P3U0   A0A0A1XA98   A0A1A9Z0E7   A0A1A9X5N2   A0A0Q5U5J9   P17971   A0A1W4UT45   A0A0Q9WJQ5   A0A1I8MQI2   A0A0Q9XNA3   M9PFP1   A0A0P8YBQ8   A0A1W4URC2   A0A0Q5UHC6   P17971-1   A0A1W4UE14   A0A0Q9WUN0   B3M701   B4IIM4   B3NIF3   W8C343   A0A2J7PXU2   A0A067QL12   B4MXL6   A0A0M4EIW8   A0A0R3P720   K7IY22   E0VBM4   A0A3B0JV30   Q29DG1   B4H997   A0A1W4WRP6   A0A0R3P755   A0A154PM26   A0A195BA78   A0A2A3ED36   A0A195ETU0   A0A087ZTU2   V9IEP6   A0A195E528   A0A1L8DF39   A0A195D0I0   A0A151X609   A0A0L7RBH1   V9IF76   A0A0N0BDX4   A0A310SCK9   D6W6N1   A0A0C9QGR5   A0A026WNN5   A0A3L8DV17   A0A158NWY3   E9IQT6   N6TY00   A0A0T6AZF0   E2A858   A0A0J7KX79   A0A0J9RY24   A0A182R109   A0A182NJP2   A0A182L399   Q7QIS7   W5JNE5   A0A182Y273   A0A182RXN9   Q173M3   A0A084WJW3   A0A182J361   A0A182MFM1   A0A182P7Q5   A0A182VIS1   A0A182K028  

PDB

2I2R     E-value=1.70736e-58,     Score=572

KEGG

101745381    K04892 potassium voltage-gated channel Shal-related subfamily D member 2 | (RefSeq) potassium voltag

GO

GO:0034765   GO:0051260   GO:0008076   GO:0005249   GO:0005267   GO:0005244   GO:0016021   GO:0007268   GO:0005250   GO:0008306   GO:0030425   GO:0043204   GO:0005886   GO:0006813   GO:0071805   GO:0005515   GO:0005216   GO:0006811   GO:0016020   GO:0006281   GO:0006259   GO:0055085  

PANTHER

PTHR11537  

Subcellular location

Membrane  
Cell projection  
Dendrite  
Perikaryon  

Length:

372

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

96.77039

Exp number, first 60 AAs:

2.94086

Total prob of N-in:

0.64916

inside

1  -  184

TMhelix

185  -  207

outside

208  -  226

TMhelix

227  -  249

inside

250  -  260

TMhelix

261  -  280

outside

281  -  322

TMhelix

323  -  345

inside

346  -  372

 

 

Pi

324.937729

Theta

237.440582

Tajima's D

1.133166

CLR

0

CSRT

0.696565171741413

Interpretation

Uncertain