Gene

KWMTBOMO15858

Pre Gene Modal

BGIBMGA013356

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_potassium_voltage-gated_channel_protein_Shal_[Bombyx_mori]

Location

Bomo_Chr27(-):148014-157311      View in EpiBrowser

Full name

Potassium voltage-gated channel protein Shal      

Alternative Name

Shaker cognate l
Shal2

Location in the cell

Nuclear   Reliability : 3.209

CDS

ATGGTCCCGGGCACCATCGCGGGCAAGATCGTGGGTGGAGTATGCTCGCTGTCCGGAGTGCTGGTCATTGCTCTACCGGTACCGGTTATCGTCTCCAACTTCTCCAGGATCTATCACCAAAACCAACGCGCTGATAAAAGAAAGGCACAACGAAAAGCCCGTCTTGCCCGCATCCGCATTGCCAAGGCATCTTCAGGCGCTGCCTTCGTGTCCAAGAAGAAAGCTGCCGAAGCTCGTCTTGCAGCCCAGGAGTCAGGCGTGGAGCTTGATGATGCCGGCAGGGATGAGGATATTTTCGAATTGCAACATCACCATCTTTTGCGATGCTTGGAGAGGACTACGGATCGGGAGTTCGTGGAGATAGAGAACCCTTACAACGGAGCTGCGAAGAGGCCGGGCTCGCCCTCGCCCCTCGCGTCACCCGCCCACTCGTCCCGCGCGCCCGCCCTGCTGGCCTGCTGCGCGCGGTGCGGCTGCTGCCCACAGAAGTACCAGGTCCTGATATTAGAGTCAAGTAGGAAGGGCCGGAAGGCGCGGCGGTACACCGCTACGTCGCGGCCCTCGGACACGTCGGTGTCGGCCGCCGCGAGCGAGGACCCGCTACCACAAGCATGCGGTAAATACATTCCTGCGGGCAGCACGGTGCAAGGAAACCAGACAGGGGTTGCGATGGACGGGACCTACCTCGTCGAGGCATCCTTCTAG

Protein

MVPGTIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRKARLARIRIAKASSGAAFVSKKKAAEARLAAQESGVELDDAGRDEDIFELQHHHLLRCLERTTDREFVEIENPYNGAAKRPGSPSPLASPAHSSRAPALLACCARCGCCPQKYQVLILESSRKGRKARRYTATSRPSDTSVSAAASEDPLPQACGKYIPAGSTVQGNQTGVAMDGTYLVEASF

Subunit

Heterotetramer of potassium channel proteins (By similarity). Interacts (via C-terminal dendritic targeting motif) with SIDL.

Miscellaneous

The segment S4 is probably the voltage-sensor and is characterized by a series of positively charged amino acids at every third position.

Similarity

Belongs to the potassium channel family.
Belongs to the potassium channel family. D (Shal) (TC 1.A.1.2) subfamily. Shal sub-subfamily.

Keywords

Alternative splicing   Cell projection   Complete proteome   Glycoprotein   Ion channel   Ion transport   Membrane   Potassium   Potassium channel   Potassium transport   Reference proteome   Transmembrane   Transmembrane helix   Transport   Voltage-gated channel  

Feature

chain  Potassium voltage-gated channel protein Shal
splice variant  In isoform A.

Uniprot

H9JUZ3   A0A3S2M0I8   A0A212FK91   A0A0N0PCR5   A0A0L7LEE3   A0A2A4JFT1   + More
A0A2H1WDB0   A0A2A4JGB8   D6W6N1   A0A1W4WRP6   B3M701   B4MXL6   A0A1W4URC2   A0A0Q5U5J9   P17971   A0A0J9RY24   A0A0A1XKY8   B4KZC6   A0A0M4EIW8   A0A1B0FMG4   A0A1A9XLY8   A0A1A9UT12   A0A1B0B626   A0A1A9Z0E7   A0A1A9X5N2   A0A0L0C821   B4PGF3   A0A3B0JV30   B4LCL8   A0A034VF95   B4J1C1   A0A1I8P3Q6   N6TY00   W8C343   A0A1I8P3U8  

Pubmed

19121390    22118469    26354079    26227816    18362917    19820115    + More
17994087    18057021    2333511    2336395    10731132    12537572    20550966    22936249    25830018    26108605    17550304    25348373    23537049    24495485   

EMBL

BABH01037441    RSAL01000085    RVE48342.1    AGBW02008100    OWR54164.1    KQ460466    + More
KPJ14628.1    JTDY01001450    KOB73837.1    NWSH01001635    PCG70626.1    ODYU01007865    SOQ51017.1    PCG70624.1    KQ971307    EFA10968.1    CH902618    EDV40866.1    CH963876    EDW76785.1    CH954178    KQS44245.1    KQS44246.1    M32660    AE014296    BT024203    CM002912    KMZ00564.1    GBXI01002680    JAD11612.1    CH933809    EDW18952.1    CP012525    ALC44765.1    CCAG010017555    JXJN01008949    JRES01000778    KNC28395.1    CM000159    EDW95312.2    OUUW01000002    SPP76601.1    CH940647    EDW69881.1    KRF84625.1    KRF84627.1    KRF84629.1    KRF84631.1    KRF84632.1    GAKP01017790    GAKP01017788    GAKP01017786    JAC41164.1    CH916366    EDV97990.1    APGK01047179    KB741077    KB632384    ENN74185.1    ERL94320.1    GAMC01010327    GAMC01010326    GAMC01010323    JAB96229.1   

Proteomes

UP000005204    UP000283053    UP000007151    UP000053240    UP000037510    UP000218220    + More
UP000007266    UP000192223    UP000007801    UP000007798    UP000192221    UP000008711    UP000000803    UP000009192    UP000092553    UP000092444    UP000092443    UP000078200    UP000092460    UP000092445    UP000091820    UP000037069    UP000002282    UP000268350    UP000008792    UP000001070    UP000095300    UP000019118    UP000030742   

PRIDE

H9JUZ3    P17971   

Pfam

PF11879   DUF3399        + More
PF00520   Ion_trans
PF02214   BTB_2
PF11601   Shal-type

Interpro

IPR028325   VG_K_chnl        + More
IPR024587   K_chnl_volt-dep_Kv4_C       
IPR003975   K_chnl_volt-dep_Kv4       
IPR003968   K_chnl_volt-dep_Kv       
IPR027359   Volt_channel_dom_sf       
IPR021645   Shal-type_N       
IPR003131   T1-type_BTB       
IPR005821   Ion_trans_dom       
IPR000210   BTB/POZ_dom       
IPR011333   SKP1/BTB/POZ_sf       

SUPFAM

SSF54695   SSF54695       

Gene 3D

1.20.120.350    

ProteinModelPortal

H9JUZ3   A0A3S2M0I8   A0A212FK91   A0A0N0PCR5   A0A0L7LEE3   A0A2A4JFT1   + More
A0A2H1WDB0   A0A2A4JGB8   D6W6N1   A0A1W4WRP6   B3M701   B4MXL6   A0A1W4URC2   A0A0Q5U5J9   P17971   A0A0J9RY24   A0A0A1XKY8   B4KZC6   A0A0M4EIW8   A0A1B0FMG4   A0A1A9XLY8   A0A1A9UT12   A0A1B0B626   A0A1A9Z0E7   A0A1A9X5N2   A0A0L0C821   B4PGF3   A0A3B0JV30   B4LCL8   A0A034VF95   B4J1C1   A0A1I8P3Q6   N6TY00   W8C343   A0A1I8P3U8  

KEGG

101745381    K04892 potassium voltage-gated channel Shal-related subfamily D member 2 | (RefSeq) potassium voltag

GO

GO:0005249   GO:0008076   GO:0016021   GO:0071805   GO:0051260   GO:0034765   GO:0005250   GO:0007268   GO:0008306   GO:0030425   GO:0043204   GO:0005886   GO:0006813  

PANTHER

PTHR11537  

Subcellular location

Membrane  
Cell projection  
Dendrite  
Perikaryon  

Length:

234

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.82233

Exp number, first 60 AAs:

22.61141

Total prob of N-in:

0.14349

POSSIBLE N-term signal

sequence

outside

1  -  9

TMhelix

10  -  32

inside

33  -  234

 

 

Pi

232.341838

Theta

198.32306

Tajima's D

1.321656

CLR

0.089386

CSRT

0.745512724363782

Interpretation

Uncertain