Silkworm Genome Informatics Database

Gene

KWMTBOMO15856

Pre Gene Modal

BGIBMGA013358

Annotation

PREDICTED:_paired_box_protein_Pax-5_isoform_X4_[Bombyx_mori]

Location

Bomo_Chr27(-):44222-63991 View in EpiBrowser

Transcription factor

PAX

Location in the cell

Nuclear Reliability : 3.65

CDS

ATGGTATGGGAGGCTGTTGTGGTTGATGAAGTTGAGGTCGAGGGTCACGGCGGAGTGAACCAGCTGGGCGGCGTGTTCGTGAACGGGCGGCCGCTGCCGGACGTGGTGCGCCAGCGCATCGTGGAGCTGGCCCACAGCGGCGTGCGGCCCTGCGACATCAGCCGCCAGCTGCGCGTCTCGCACGGATGTGTCTCCAAGATACTCTCCAGGTACTACGAGACGGGCAGCTTCAAGGCCGGCGTGATCGGTGGCTCCAAGCCGAAGGTGGCGACGCCGCCGGTGGTGGACGCCATCGCGGCCTACAAACGCGAGAACCCAACCATGTTCGCGTGGGAGATCCGCGACCGACTCCTCAGCGAAGGCATCTGCAGCCAGGACAACGTGCCTTCCGTCTCCAGCATTAACAGGATCGTCCGCAACAAGGCCGCGGAGAAGGCGAAGCACGCGCACAACCAGCAGCAGCAGCAACAGCAGGAGCAGGAGATCTCCTCCGCGCAGGGCAGCGTCGTCTCTGTGATAACGCACGCGGGCAGCGGCGGCGCCGGGACCGGGGAGCCGCCCGCCAGCTACAGCATCAACGGCATCCTGGGCATCGAGCACGTGGACGCGCTGCCCCCCGCGCCCGCCGCACCTCCCGCACTCAAGCGGAAGCGCCACGAGGACCAGGATGAGAACCGCGACTTCAACAGTCACTCGGAGGACGACATCAAGCGACAGAGAGGACACTACAACGGAGATCAGATATACTCCAACCTCTGGTCGTCGTCCAAGTGGAGCCTGAAGGACGAGTACAAGCTGCTGTCGGAGCTGTCCGGGGGCGCGGGCGGCTACTACCCCGAGCTGTTCGAGCCGTACGAGCACGCGCCCCCCGCCGCGCACCCCGCGCACCCCGCGCACCCCGCACACCCCGCGCACCTCGCGCACCACGCAGCGACGAATGAGTCCGGAGGCTCCACCGGCGGCGCGGAGCCTCCCTCCGCGGCCGCCAGCCCCGACGCCGCCGCTCTGGTGGTGCTGCAGCCGCCGGCGCCGCCCTACCCGCCCTACGCGCACTACGACGGCAGCACGACGCTGGCGAGTGAGTACGCGTATGCTGCTCCGTACTCACAGTACTCGCCCTACGGAGGACCCTACTCACACTCCACCGCCACGGGCCTGCTCTCCAAGTGGGAATTACTGTAA

Protein

MVWEAVVVDEVEVEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHSGVRPCDISRQLRVSHGCVSKILSRYYETGSFKAGVIGGSKPKVATPPVVDAIAAYKRENPTMFAWEIRDRLLSEGICSQDNVPSVSSINRIVRNKAAEKAKHAHNQQQQQQQEQEISSAQGSVVSVITHAGSGGAGTGEPPASYSINGILGIEHVDALPPAPAAPPALKRKRHEDQDENRDFNSHSEDDIKRQRGHYNGDQIYSNLWSSSKWSLKDEYKLLSELSGGAGGYYPELFEPYEHAPPAAHPAHPAHPAHPAHLAHHAATNESGGSTGGAEPPSAAASPDAAALVVLQPPAPPYPPYAHYDGSTTLASEYAYAAPYSQYSPYGGPYSHSTATGLLSKWELL

Uniprot

A0A2H1V5U7 A0A3S2NTQ8 A0A087TCW8

EMBL

ODYU01000836 SOQ36201.1 RSAL01000085 RVE48343.1 KK114638 KFM62957.1 + More

Proteomes

UP000283053 UP000054359

Pfam

PF00292 PAX

Interpro

IPR036388   WH-like_DNA-bd_sf        + More
IPR009057   Homeobox-like_sf
IPR001523   Paired_dom

SUPFAM

SSF46689 SSF46689

Gene 3D

1.10.10.10

CDD

cd00131 PAX

ProteinModelPortal

A0A2H1V5U7 A0A3S2NTQ8 A0A087TCW8

PDB

1MDM E-value=7.25002e-56, Score=550

KEGG

101735602 K15608 paired box protein 2 | (RefSeq) paired box protein Pax-5

GO

GO:0003677 GO:0006355 GO:0005634 GO:0007275 GO:0016209 GO:0016491 GO:0005215 GO:0006270 GO:0042555 GO:0003707 GO:0006281 GO:0006259

Subcellular location

Nucleus

Length:

393

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000650000000000001

Exp number, first 60 AAs:

0.00019

Total prob of N-in:

0.00672

outside

1 - 393

Pi

19.181206

Theta

191.384996

Tajima's D

-0.728976

CLR

1.224667

CSRT

0.189640517974101

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree