SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15851
Pre Gene Modal
BGIBMGA005783
Annotation
PREDICTED:_piggyBac_transposable_element-derived_protein_4-like_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.806
 

Sequence

CDS
ATGTTTAGTCTTGGAGATGAAAACGTGGAAGTGGAAACTTCTCCAGGCCCATCTGGAATTCCACAACGGCCTTCATTGACAGAGCAATTGAAAGTCGCCAAGGTGGCGAGGCTTTTGGATAAAAAGCATGAGAATTTGCTGTCTGCGGACCAAAAAAAGGAGCTGGCCAGGCTGCGCGATGGCAAGCAAGTGGGCAATTTTAAAATGCCAGATGCTCCAGAACCACAAAGAGGAAGAGGAAAGGGAAAGGGGAAGGGCAAAGGAAGGGGCAGTGAAGACTCGCGGATGTGGAGGCCATGCCCACTTTTACCTGGGGTACCAACTGTCCCTCCTCCACGTGTACGTCAGTCGTGGGAATTGCAACAGCAACGCCCGATTGATATCACCGCGGAGCAGGAGGGTGAGGATGATGACATCGAAAGCTATTTTCTTCCAGATATCACCGAGGATGAGGAGATGCGTCCTCCCCTCCTCGAGGATGAGGAGGCCGTTCCTTCTGCAGGGACCCCACCTCAAGCGAAGAAACGCAAGATCCAATTTTCGCCCTCGATGGGGATCATCCAGGCTACTGCATTGCCTCAAAATATCGTGCCAGCAGAGATAGAACTCCTGGGGTTTACACCTTCTTCTACCGGTACTCGAACAGCGCTTGACTCTGGAAGAAGTAATTACAGTATGGATATCGATATAGATATGGAGCGTGACTTCATAGAGCCTGGCGAAGGCAGCGAAGTAGATGAAGGTGATTCGGCGAATATGGTCGGTATGATCGATAATTCTTTGAAACCAAGACGAATCGATGATTTTCCGATGGACTTAGACAGTATTGCTGAACATGAGGTAGTTGAGGTGATACAGGAGCTGGACAATGCTGCCGACGAAGTCCTTCGGAACGTGGTAGGACCGGAAACCGATCTGCTTCATTTTGACTGGCGAGGCGAGCCGGAAAATTTTGAGTCTGTCAGGGAAGCATTTACTGTGCCATCTACTGGACCAACGTTTGATAACGCCGATTTAATTCCCTTAGATGTTTTTTTCAAGATTTGGGATGCAGATATTATTGCTTACATCGTGCGCGAAACCAACCGCTACGGTGCTCAGCTAATAAGGTCGACCATTCCATCCAAGCCAAATTCTAGATTAAGCCGTTGGAAAGACGTCACCAGTGACGAAATCCTACGGTTTTTAGCAGTTTTAATGTTACAGTCACTAGTTATAGATTATGTGGAGCGCGAATATTGGTATGCCGTGATTGAAGAACTCCAAATAGGCAATTTTAAAGAAATAATGACTTATAACCGTTTCATCGTCATCAAACGTTGTCTCCATTTTATAGACAATGCCACTTTGCCCGTGCCGCCTACCAAACTCGATAAAATCATCCCCATCATAGAGCACCTAAACAAAAAATTTAAGTCTTTATACGTACTAGAACAAAATATAGCAATTGACGAGTCACTCCTTCTTTGGAAGGGGCGCCTCTCATTTGCGCAAAAAATTGCTACAAAAAGAGCTCGAGTAGGTATAAAGTCTTACGAGTTATGTGAATCCAGGACTGGATATTTATGGCAGATGGAGGTCTACACGGGCAAAGGGCACGCACATGTGGTACAAGACGGGGAGCCGGAAGAGCGCGGGCAAGAGTCTGACGAGCCGGAGAGTGCCACGGCCCAGATTGTGCTGAACTTAACGAGACCACTTTTTGATAAAGGCCATACATTAATAATGGACAATTTTTATAATGCGCCACTTTTGTCTCGGATCCTAAAAGTTCAGCACAAGACTGATTCGATGGGTACTCTACGACTTAACAGAGAGTTTGTCCCCGAAGCTCTTAAAAAAAAAACAAAAAAAAACATGAAGGAGGGCGAGGTGGCATTCAGCACAACCAAAGACCTCAGTGTGGTTGTGTGGATGGACAAAAATATTGTGGCAATGATTTCTTCTTTCCATCACATAGAAGTCGGCGGCATTGAAAAATACGGTTATTACCGGTACAAACCGCAAGTTGTTCTTGATTATAATTTCTCAATGGGCGGCATCGACCACAAAGATCAAATGCTGTCTGCCTATCCCATTGAGAGATCACGTAACATAATCTGGTACAAAAAATTATTTCGCCGACTTTTAAATGTATCGATGCATAATGCTCTCGTGATGTTCAACCACAACCGCACTCACGCCCTTCGTCACCGTGAATTCCGCCTGCAGTTGGCAAAGCAACTGCTGCAAAGCAGCAGATCAGCAGCACCTTCCCGGTCTTTAGCACCGGCAGCACGACCAGAACCAGCGGCATGCATACGGGACATGCACTTGCCAGGAAAAAATACAAAAAAACAGCGCTGCAAGCTCTGCTACTCTGCCAAAGTGCAGCGCTCGACGGTGTGGCGGTGTACCACCTGCAATGTCAATCTGTGTATCGTAGGATGCTACACCGTATACCATATCAATCTAGCGCAAACGCCCGCCGTTTAG
Protein
MFSLGDENVEVETSPGPSGIPQRPSLTEQLKVAKVARLLDKKHENLLSADQKKELARLRDGKQVGNFKMPDAPEPQRGRGKGKGKGKGRGSEDSRMWRPCPLLPGVPTVPPPRVRQSWELQQQRPIDITAEQEGEDDDIESYFLPDITEDEEMRPPLLEDEEAVPSAGTPPQAKKRKIQFSPSMGIIQATALPQNIVPAEIELLGFTPSSTGTRTALDSGRSNYSMDIDIDMERDFIEPGEGSEVDEGDSANMVGMIDNSLKPRRIDDFPMDLDSIAEHEVVEVIQELDNAADEVLRNVVGPETDLLHFDWRGEPENFESVREAFTVPSTGPTFDNADLIPLDVFFKIWDADIIAYIVRETNRYGAQLIRSTIPSKPNSRLSRWKDVTSDEILRFLAVLMLQSLVIDYVEREYWYAVIEELQIGNFKEIMTYNRFIVIKRCLHFIDNATLPVPPTKLDKIIPIIEHLNKKFKSLYVLEQNIAIDESLLLWKGRLSFAQKIATKRARVGIKSYELCESRTGYLWQMEVYTGKGHAHVVQDGEPEERGQESDEPESATAQIVLNLTRPLFDKGHTLIMDNFYNAPLLSRILKVQHKTDSMGTLRLNREFVPEALKKKTKKNMKEGEVAFSTTKDLSVVVWMDKNIVAMISSFHHIEVGGIEKYGYYRYKPQVVLDYNFSMGGIDHKDQMLSAYPIERSRNIIWYKKLFRRLLNVSMHNALVMFNHNRTHALRHREFRLQLAKQLLQSSRSAAPSRSLAPAARPEPAACIRDMHLPGKNTKKQRCKLCYSAKVQRSTVWRCTTCNVNLCIVGCYTVYHINLAQTPAV

Summary

Pfam
PF13843   DDE_Tnp_1_7        + More
PF13842   Tnp_zf-ribbon_2
Interpro
IPR018159   Spectrin/alpha-actinin        + More
IPR029526   PGBD       
IPR032718   PGBD4_C_Znf-ribbon       
IPR021109   Peptidase_aspartic_dom_sf       
IPR001995   Peptidase_A2_cat       
SUPFAM
SSF50630   SSF50630       
Gene 3D

Ontologies

GO

Topology

Length:
824
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.10268
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00006
outside
1  -  824
 
 

Population Genetic Test Statistics

Pi
62.438892
Theta
149.776668
Tajima's D
-0.691703
CLR
0.070565
CSRT
0.1974401279936
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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