Gene

KWMTBOMO15843

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr26(+):11362703-11363191      View in EpiBrowser

Full name

Craniofacial development protein 2      

Alternative Name

p97 bucentaur protein

Location in the cell

Nuclear   Reliability : 2.075

CDS

ATGATCAATGATGACCGTATTCGCAACATTGTGGGAAGGTTTGGTGTGGGTTCTAAGAGCAATCGTGGCCAACGACTTGTGGAGTATCGCATCGAGAGGAATCTTTGCATAACAAACACGCAATTCCAACATCACCCAAGACGTTTATACACATGGACTTTCCCTGGAGCGCGGTATAGCAATCAGATCGATCACATACTCGTGAACACGCGTTGGAAGTCGTCCGTCGTAAATGTGAAGACATGCTTTTTTAATTTGCGCTCAGGCTAA

Protein

MINDDRIRNIVGRFGVGSKSNRGQRLVEYRIERNLCITNTQFQHHPRRLYTWTFPGARYSNQIDHILVNTRWKSSVVNVKTCFFNLRSG

Miscellaneous

Gene duplication of the ancestral BCNT gene leads to the h-type BCNT (CFDP1) gene and the p97BCNT (CFDP2) gene. The latter contains a region derived from the endonuclease domain of a retrotransposable element RTE-1. This repetitive sequence associated with the BCNT gene is specific to Ruminantia.

Keywords

Complete proteome   Cytoplasm   Direct protein sequencing   Nucleus   Reference proteome  

Feature

chain  Craniofacial development protein 2

Uniprot

A0A2H1W4B8   D7F163   D7F174   D7F168   D7F162   A0A2H1V4P4   + More
D7F172   A0A2W1BNH4   A0A3D1L4K7   A0A2W1BHL0   A0A2S2NUN8   A0A0L8I0S1   A0A0L8GIP3   A0A023GCB5   D7F175   A0A0J7L4A4   A0A023GD30   E9I958   W4XIJ4   L8IKR7   A0A3Q1M0C5   A0A0J7NGC2   L8IQH5   W4YZ24   A0JBZ9   A0A1S3DE02   L8IMU7   B6F238   F1MS40   A0A3Q1MSH0   O02751   A0A2G8JL44   A0A3Q1NFT8   L8IKL3   A0A0B1PP52   A0A3Q1MMW9   A0A3Q1NNM3   W4Y7C9   A0A3Q1M3D8   A0A0B7BS70   Q4ADK3   A0A0B7BR26   A0A0B7BTN4   H2YWZ5   A0A3Q1MMZ0   A0A3Q1MLE5   A0A3Q1MHP3   A0A0L8HFQ4   W4Z0F5   D7F161   A0A3Q1LYK9   A0A3Q1NNC3   A0A0B7BTM9   A0A0B7BU90   A0A3Q1MD43   A0A0B7BTM4   A0A0B7BR31   A0A0B7BUA0   W4Z830   A0A0B7BR36   A0A0B7BRV7   A0A3Q1EK63   A0A0B7BRW7   W4YPR9   A0A3Q1MC12   A0A3Q1MD68   A0A3Q1MTP7   A0A3Q1LUJ6   Q8SQ39   Q7YRU5   D5LB39   A0A3Q1MEL3   A0A2G8KUE0   A0A3Q1LQW1   Q588U8   A0A1S3DQR0   A0A3Q1M1R5   A0A0B7B4J6   A0A3Q1MS18   A0A3Q1MM58   A0A3Q1MVK1   A0A3Q1M6I3   A0A3Q1MM21   A0A0B7B1J3   A0A0B7BTK3   L8I6X2   D7F167   A0A3Q1M0B3   A0A3Q1MQA7   A0A3S3P648   A0A0P4VZ55   W4Y522   A0A0B7B2E7   A0A3Q1M255   A0A1S3DNU9   A0A3Q1LMM1   Q4R2S8   A0A3Q1NGA3   W4XDX3   J9KN98  

Pubmed

20470440    28756777    30148503    21282665    22751099    19393038    + More
16384818    9006920    12832649    9602175    10350657    29023486   

EMBL

ODYU01006118    SOQ47682.1    FJ265548    ADI61816.1    FJ265559    ADI61827.1    + More
FJ265553    ADI61821.1    FJ265547    ADI61815.1    ODYU01000634    SOQ35746.1    FJ265557    ADI61825.1    KZ150025    PZC74827.1    DPCO01000033    HCE59366.1    KZ150087    PZC73751.1    GGMR01007827    MBY20446.1    KQ416818    KOF95029.1    KQ421665    KOF76833.1    GBBM01003916    JAC31502.1    FJ265560    ADI61828.1    LBMM01000801    KMQ97461.1    GBBM01003639    JAC31779.1    GL761727    EFZ22895.1    AAGJ04122993    JH881209    ELR55722.1    LBMM01005351    KMQ91585.1    JH880989    ELR57387.1    AAGJ04003947    BC149202    AB259013    AAI49203.1    BAF36506.1    ELR57388.1    LWLT01000020    AB465690    BAG75458.1    D84513    D84514    D84515    AB081095    AB005652    MRZV01001667    PIK36482.1    JH881217    ELR55677.1    KN538403    KHJ42451.1    AAGJ04113592    AAGJ04113593    AAGJ04113594    HACG01048887    CEK95752.1    AB213486    BAE19808.1    HACG01048869    CEK95734.1    HACG01048886    CEK95751.1    KQ418263    KOF88093.1    AAGJ04089624    FJ265546    ADI61814.1    HACG01048881    CEK95746.1    HACG01048875    CEK95740.1    HACG01048876    CEK95741.1    HACG01048874    CEK95739.1    HACG01048885    CEK95750.1    AAGJ04154883    HACG01048879    CEK95744.1    HACG01048873    CEK95738.1    HACG01048883    CEK95748.1    AAGJ04030456    AB084085    BAB90842.1    AB113247    BAC78521.1    GU815090    ADF18553.1    MRZV01000365    PIK51575.1    AB191483    AB192410    AB158226    HACG01040351    CEK87216.1    HACG01040349    CEK87214.1    HACG01048595    CEK95460.1    JH881842    ELR51968.1    FJ265552    ADI61820.1    NCKU01004395    RWS06003.1    GDRN01105844    GDRN01105842    JAI57667.1    AAGJ04102956    HACG01040353    CEK87218.1    AB190444    BAE00011.1    ABLF02014119    ABLF02061067   

Proteomes

UP000053454    UP000036403    UP000007110    UP000009136    UP000079169    UP000291000    + More
UP000230750    UP000007875    UP000257200    UP000285301    UP000007819   

PRIDE

D7F163    D7F174    D7F168    D7F162    D7F172    D7F175    + More
L8IMU7    O02751    D7F161    D5LB39    Q588U8    D7F167   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF03372   Exo_endo_phos

Interpro

IPR027124   Swc5/CFDP2        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR002138   Pept_C14_p10       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A2H1W4B8   D7F163   D7F174   D7F168   D7F162   A0A2H1V4P4   + More
D7F172   A0A2W1BNH4   A0A3D1L4K7   A0A2W1BHL0   A0A2S2NUN8   A0A0L8I0S1   A0A0L8GIP3   A0A023GCB5   D7F175   A0A0J7L4A4   A0A023GD30   E9I958   W4XIJ4   L8IKR7   A0A3Q1M0C5   A0A0J7NGC2   L8IQH5   W4YZ24   A0JBZ9   A0A1S3DE02   L8IMU7   B6F238   F1MS40   A0A3Q1MSH0   O02751   A0A2G8JL44   A0A3Q1NFT8   L8IKL3   A0A0B1PP52   A0A3Q1MMW9   A0A3Q1NNM3   W4Y7C9   A0A3Q1M3D8   A0A0B7BS70   Q4ADK3   A0A0B7BR26   A0A0B7BTN4   H2YWZ5   A0A3Q1MMZ0   A0A3Q1MLE5   A0A3Q1MHP3   A0A0L8HFQ4   W4Z0F5   D7F161   A0A3Q1LYK9   A0A3Q1NNC3   A0A0B7BTM9   A0A0B7BU90   A0A3Q1MD43   A0A0B7BTM4   A0A0B7BR31   A0A0B7BUA0   W4Z830   A0A0B7BR36   A0A0B7BRV7   A0A3Q1EK63   A0A0B7BRW7   W4YPR9   A0A3Q1MC12   A0A3Q1MD68   A0A3Q1MTP7   A0A3Q1LUJ6   Q8SQ39   Q7YRU5   D5LB39   A0A3Q1MEL3   A0A2G8KUE0   A0A3Q1LQW1   Q588U8   A0A1S3DQR0   A0A3Q1M1R5   A0A0B7B4J6   A0A3Q1MS18   A0A3Q1MM58   A0A3Q1MVK1   A0A3Q1M6I3   A0A3Q1MM21   A0A0B7B1J3   A0A0B7BTK3   L8I6X2   D7F167   A0A3Q1M0B3   A0A3Q1MQA7   A0A3S3P648   A0A0P4VZ55   W4Y522   A0A0B7B2E7   A0A3Q1M255   A0A1S3DNU9   A0A3Q1LMM1   Q4R2S8   A0A3Q1NGA3   W4XDX3   J9KN98  

KEGG

105841419    no KO assigned | (RefSeq) uncharacterized LOC105841419

GO

GO:0003964   GO:0004519   GO:0004197   GO:0005737   GO:0005634  

PANTHER

PTHR23227  

Subcellular location

Cytoplasm  
Nucleus  

Length:

89

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00059

Exp number, first 60 AAs:

0.00024

Total prob of N-in:

0.64890

inside

1  -  89

 

 

Pi

198.483031

Theta

143.839923

Tajima's D

1.193927

CLR

0

CSRT

0.702614869256537

Interpretation

Uncertain