SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15821  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA000010
Annotation
osiris_9_precursor_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 2.482
 

Sequence

CDS
ATGGTGATCGGCGTGGCGTGGGCGATGCCTGCTGCCGAACAAGACTCTGACCCGAACATCCTGGGAAGCGTCCTGGGCGTCGTCAAGGAGTGCGTCGACGGTGACGTCACCCTGTGCCTCAAGGAGAAAGCTTTGAGATACGTGGAGACTTTGAGGTCTAAGAGGGAGATCACGCTGGTCGATGGCGTTACTTTGGACAGCAAAGGCTCACCCAGGTCTGCCAGGGCCTTGGAGCCACTGCCCGAGGAGCCCAAGGCCAGGGAAGCACAGGTCGAGTCTAGGCTCGTAGACGGTGTGGCAGACTTCTTGGAAAATTACGTCGTACAGTTCAAGCTCCCGTCTTCCGCTGTTGAGGGCATGAGGAGATCACTAGATGAAGCTCGTGGTAAGAAGAAGAAGATCAAGCAGCTCCTCCCTCTCTTGGCCATCGCCAAACTAAAGATCATGGCCCTCATCCCCCTATTCTTGGGCATCATCGCCTTCGCAGCCGCCAAAGCCGTCGTACTTGCCAAGATCTCACTCCTGGTCGCCGGTATCATTGCTCTGAAGAAGCTGCTGGCCAGCAAGCACACCGAGACCAGCTACGAAGTGGTCGCCCATCCTCACCACGAGGAGCACTACGCAAGCAGCGGCCACGGCTGGGGCAGGTCTATCGATGACGCCCAAAACATGGCCTACAGCGCCCATATTAAATCTGATTAA
Protein
MVIGVAWAMPAAEQDSDPNILGSVLGVVKECVDGDVTLCLKEKALRYVETLRSKREITLVDGVTLDSKGSPRSARALEPLPEEPKAREAQVESRLVDGVADFLENYVVQFKLPSSAVEGMRRSLDEARGKKKKIKQLLPLLAIAKLKIMALIPLFLGIIAFAAAKAVVLAKISLLVAGIIALKKLLASKHTETSYEVVAHPHHEEHYASSGHGWGRSIDDAQNMAYSAHIKSD

Summary

EMBL
BABH01035639    FJ176298    ACI23620.1    AK401055    KQ459144    BAM17677.1    + More
KPJ03632.1    AK402265    BAM18887.1    KQ459717    KPJ20268.1    AGBW02008652    OWR52865.1    KZ149905    PZC78351.1    ODYU01000169    SOQ34488.1    JTDY01003657    KOB69204.1    RSAL01000230    RVE43856.1    BABH01035638    OWR52866.1    AK401081    BAM17703.1    KPJ03633.1    PZC78349.1    GEMB01002460    JAS00726.1    ACPB03007640    NWSH01003095    PCG66955.1    AJVK01013607    DS231991    EDS30693.1    CH477298    EAT44321.1    SOQ34491.1    AK402362    BAM18984.1    JTDY01006624    KOB65825.1    KPJ20269.1    UFQT01002904    SSX34245.1    GBXI01015882    JAC98409.1    GAKP01007097    JAC51855.1    GDHF01009516    JAI42798.1    GAMC01010617    JAB95938.1    OWR52867.1    KPJ20270.1    KPJ03634.1    DS235004    EEB10243.1    AGBW02009210    OWR51343.1    ODYU01001052    SOQ36759.1    ATLV01014430    KE524972    KFB38737.1    JTDY01003716    KOB69102.1    CH940656    EDW58523.1    AAAB01008880    EAA08642.1    APCN01002561    AXCN02001159    CP012526    ALC46828.1    GDJX01022348    JAT45588.1    SOQ34490.1    JRES01001623    KNC21445.1    AXCM01003828    CH964272    KRG00079.1    AK401833    BAM18455.1    CVRI01000003    CRK87124.1    CH479179    EDW24284.1    ABLF02039450    CM000070    EAL28060.1    PZC78347.1    CH916377    EDV90715.1    ADMH02000793    ETN65043.1    GGMS01007442    MBY76645.1    JXJN01007734    KOB69101.1    CH933806    EDW14700.1    OUUW01000005    SPP80208.1    NEVH01009379    PNF33295.1    KK854322    PTY14643.1    GGMR01008571    MBY21190.1    KPJ20272.1    AK401030    BAM17652.1    KPJ03636.1    KPJ20271.1    AK402255    BAM18877.1   
Pfam
PF07898   DUF1676
Interpro
IPR012464   DUF1676        + More
IPR031305   Casein_CS       

Ontologies

Topology

Length:
233
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
34.14699
Exp number, first 60 AAs:
0.0026
Total prob of N-in:
0.61887
inside
1  -  136
TMhelix
137  -  159
outside
160  -  162
TMhelix
163  -  182
inside
183  -  233
 
 

Population Genetic Test Statistics

Pi
219.927613
Theta
213.20491
Tajima's D
-1.607172
CLR
0.342646
CSRT
0.0505474726263687
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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