Silkworm Genome Informatics Database

Gene

KWMTBOMO15816 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000013

Annotation

uncharacterized_LOC106106717_precursor_[Papilio_polytes]

Location

Bomo_Chr26(-):10881854-10891268 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.185 Extracellular Reliability : 1.036

CDS

ATGAAGCTCCTGGTGGTGTTAGCAGTATGCGCTGTGGCCGCAGCGAATAATGACGAAGACGTCTTCCGATCAGTGATGGGAGTGCTGAAAACTTGCTCCGATGACAACGTCGCATTGTGTCTCAAGGAAAAAGCTTTGCGATATGTGGAAAATGTCTCGAATTCTCGAGAACTCAACTTAATCGATGGCGTCAGTCTGATCGGTCAAGGCTCCCCTAGATCAGCCAGGTCCTTCGAGCCTTTACCCGACGAGCCCAGAGCCAGGGAGAATCAAGTGGACCTCAGACTTTTGGACGGAGTTGCCGATTTCTTGGAGAACTTTGTCATTCAGCTACGTCTGCCGAAGGGTGCCATTGAATCTGCGAAGCGATCCTTGGAAGAAGGTCGCGGTAAGAAGAAGAAGTTGAAGCAACTCCTGCCCATACTGGCACTCCTTCAACTGAAGATCCAGTCTCTCATCCCCGTCTTCCTCGGAATCATTGCCTTTGCCGCCGTCAAGGGTCTTATGTTAGCTAAAGCAGCGCTCTTGGCTTCCGGTTTAATACTCCTCAAGAAACTGCTTTCCAAAAACGACCATCACGAGAGCTATGAGGTCGTGGCGCATCCCCACCATGAAGAGCACTTCAGCCACAGTAGCGGTGGCGGTGGAGGCGGTCACGGAGGCTGGGGAAGGTCTGCCCCAGATGCCCAGAACTTGGCCTATAATGCCTACTTGCACTAA

Protein

MKLLVVLAVCAVAAANNDEDVFRSVMGVLKTCSDDNVALCLKEKALRYVENVSNSRELNLIDGVSLIGQGSPRSARSFEPLPDEPRARENQVDLRLLDGVADFLENFVIQLRLPKGAIESAKRSLEEGRGKKKKLKQLLPILALLQLKIQSLIPVFLGIIAFAAVKGLMLAKAALLASGLILLKKLLSKNDHHESYEVVAHPHHEEHFSHSSGGGGGGHGGWGRSAPDAQNLAYNAYLH

Uniprot

H9IRZ3 A0A212FC79 A0A3S2L1Z5 I4DIF7 A0A0N1IQF4 I4DLX5 + More
A0A2H1WVC9 A0A2W1C052 I4DLU7 I4DID7 A0A0N1PJF6 A0A212FGK5 B6DXB0 A0A0L7L1S3 A0A2H1V0X5 A0A2W1BVI2 A0A0L7KRW0 A0A1I8NZE3

Pubmed

19121390 22118469 22651552 26354079 28756777 26227816 + More

EMBL

BABH01035638 AGBW02009210 OWR51344.1 RSAL01000230 RVE43856.1 AK401075 + More
KQ459144 BAM17697.1 KPJ03637.1 KQ459717 KPJ20273.1 AK402293 BAM18915.1 ODYU01011341 SOQ57029.1 KZ149905 PZC78346.1 AK402265 BAM18887.1 AK401055 BAM17677.1 KPJ03632.1 KPJ20268.1 AGBW02008652 OWR52865.1 BABH01035639 FJ176298 ACI23620.1 JTDY01003657 KOB69204.1 ODYU01000169 SOQ34488.1 PZC78351.1 JTDY01006624 KOB65825.1

Proteomes

UP000005204 UP000007151 UP000283053 UP000053268 UP000053240 UP000037510 + More
UP000095300

PRIDE

H9IRZ3 B6DXB0

Pfam

PF07898 DUF1676

Interpro

IPR012464 DUF1676

ProteinModelPortal

H9IRZ3 A0A212FC79 A0A3S2L1Z5 I4DIF7 A0A0N1IQF4 I4DLX5 + More
A0A2H1WVC9 A0A2W1C052 I4DLU7 I4DID7 A0A0N1PJF6 A0A212FGK5 B6DXB0 A0A0L7L1S3 A0A2H1V0X5 A0A2W1BVI2 A0A0L7KRW0 A0A1I8NZE3

KEGG

101740726 no KO assigned | (RefSeq) uncharacterized LOC101740726

GO

GO:0016021

PANTHER

PTHR21879

SignalP

Position: 1 - 15, Likelihood: 0.998373

Length:

239

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

24.41464

Exp number, first 60 AAs:

0.01213

Total prob of N-in:

0.34509

outside

1 - 151

TMhelix

152 - 183

inside

184 - 239

Pi

23.141845

Theta

172.632726

Tajima's D

0.526145

CLR

0.350468

CSRT

0.52352382380881

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree