Gene

KWMTBOMO15799

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr26(-):10343124-10347090      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.042 Mitochondrial   Reliability : 1.045 Nuclear   Reliability : 1.684

CDS

ATGGAAGAAATAATAACCACCCTACGCTTAATTCAAAAAGATCTCGAAGACCAAAAAATCGCAATAAAGGAAAGCGGTATAGAAGTTGCAAAAACAGTTACGGATAATGTGAATCTGATTTTAGACGAAAAAATAAGTCAACTTGAACAAAAATATAAAACCCTAGAAGAACAATTTGAAATGCAGGAACAAAGACTTCATATATTGGAGAAACAGGCAAGAAATCGAAATATTGTATTTTTTGGCATTGAAGAACACAACTCAATCTACTCTTACTCGGATTTAGAAACGGAAATTATTAATTTCACATCAAAATATCTGGGAATCAAACTAGACCGAAAAGAAATTCAAGAAATCAGAAAAATAGGGAAAAATACAAAGAAACCTAGGCCTATTGTTATGACACTGACCACAGTTGGTAGAAAAATTGAAATTCTCAAACAAAAGAAGCTATTGAAGGATTCAAACTACTACATTAAGGAAGATTACCCACAGCATATTCTAGAGAAACGGAGAATGCTACAGGAACAAGTAAAAGTTGAAAGAGATAAGGAGGAACTTGAGATTATACAAGCAGCTGATAAGTTAAAATTTGAGAAGAGCCCAGGCCCAGATTTCATTACTAATGAAGCAATCAAACATGGATGTGAAATACTTGCATCACCACTGGCCTCATTATTTAATCTGATACTCAAAACTGCGAATATACCTGCACAATGGTCAGAATCCATTATAATCTTGCTGTATAAAAAAGGTAACCCTAATGACATTAGCAATTACAGGCCAATAAGCCTTTTGGCAACTGTTTACAAGCTTTTCTCTTCCATAATTAATCGAAGAATATCTGAAACTTTAGAAAAGAGACAGCCCATAGAGCAAGCTGGCTTCCGTAAGGGATATTCAACCGTAGACCACATACACACGCTGGAACTTATTATCGAAAAATACCAAGAGAAGCAAAGACCGCTCTATATAGCTTTTATAGATTACCAGAAGGCTTTCGACACAATTTCACACACAAGCATATGGGAGGCATTAAATCAACAAGGAGTGGAAAGTGAGTATATACAAGTTATAAAAAATATATATAAGAACAGTGTCAGTAAAGTCAAACTGGAAACAATTGGCCCTGATTTTAACATCAATAGAGGAGTGAGACAAGGGGATCCATTGTCTCCAAAACTATTTATTGCAGTATTGGAATCAATTATAAGTCAATTAGACTGGAAAAACTATGGCTTGTATATCAAAGGTGACTGCTTAAGTCATCTAAGGTTCGCAGATGACTTAGTACTGCTATCTGAAACCGGTGGTAACTTAGAGCGCATGATACAGTCATTACACGAAGCTAGCAGACAAGTCGGATTAGAAATTAATCTGAAAAAAACAAACATCATGACAAACAGTTGTAGAAGAACCATCTCACTAGAACACAAACCAATACTGTACGTGGAACAATATATCTACTTAGGAAAGCAGATAGCACTGGACAACAATAGCAATGAACTAGAGGTGGAGCGCAGAACAAGAATTACGTGGAATAAGTTCTGGAGTTACAGAGAAGTAATGAAAAGTAACATGCCAACAGAAGTGAAAAAGAAAATCATGGACACTTGTATATTGCCGTGTCTTACATACGGTTGCCAGACGTGGAAATTTACGCGTAACATTAAAAATAAATTAACAACGTGCCAGAGGGGAATGGAACGCAGCATGCTCAACATAAAAAAGACACACAGAGTGCGTCATACAAAGATAAGAAGCATAACCAAAACAGTGGACGCTCTCAAATATGCTCAAAGACTGAAGTTTAAGTGGGCTGGCCACGTAGCACGACTCAGGGATGGGAGATGGACATCGAAAGTAACTGCATGGGACGGTCCACAGGGCAAGCGGCGCGTCGGCAGACCGTACACGCGTTGGGAGGATGATATTAGAAAGGTTGCTGGACCACACTGGATTTATGTCGCCAGAGACAAAGCAGAGTGGAAATCTTTGGAGGAGGCCTTTACCTGA

Protein

MEEIITTLRLIQKDLEDQKIAIKESGIEVAKTVTDNVNLILDEKISQLEQKYKTLEEQFEMQEQRLHILEKQARNRNIVFFGIEEHNSIYSYSDLETEIINFTSKYLGIKLDRKEIQEIRKIGKNTKKPRPIVMTLTTVGRKIEILKQKKLLKDSNYYIKEDYPQHILEKRRMLQEQVKVERDKEELEIIQAADKLKFEKSPGPDFITNEAIKHGCEILASPLASLFNLILKTANIPAQWSESIIILLYKKGNPNDISNYRPISLLATVYKLFSSIINRRISETLEKRQPIEQAGFRKGYSTVDHIHTLELIIEKYQEKQRPLYIAFIDYQKAFDTISHTSIWEALNQQGVESEYIQVIKNIYKNSVSKVKLETIGPDFNINRGVRQGDPLSPKLFIAVLESIISQLDWKNYGLYIKGDCLSHLRFADDLVLLSETGGNLERMIQSLHEASRQVGLEINLKKTNIMTNSCRRTISLEHKPILYVEQYIYLGKQIALDNNSNELEVERRTRITWNKFWSYREVMKSNMPTEVKKKIMDTCILPCLTYGCQTWKFTRNIKNKLTTCQRGMERSMLNIKKTHRVRHTKIRSITKTVDALKYAQRLKFKWAGHVARLRDGRWTSKVTAWDGPQGKRRVGRPYTRWEDDIRKVAGPHWIYVARDKAEWKSLEEAFT

Uniprot

D7F178   D7F177   A0A2H1WF27   A0A2W1B5F8   A0A2W1BCS2   D7F179   + More
A0A2W1BDX2   D7F176   A0A2W1BZV1   A0A3S2TAR4   A0A2H1VS24   D7F164   D7F157   D7F160   D7F159   A0A023EXV2   D7F165   D7F158   A0A2G8JFM9   D7F166   A0A2G8K4F2   A0A2W1BLC9   A0A0R3Q573   W4YXJ0   A0A016VV56   A0A016RYK0   A0A016RXU5   A0A016V7H3   A0A016UWI5   A0A016UTS3   A0A016TQ81   A0A016VBB9   A0A016UUF2   A0A016VN75   A0A016VRX3   A0A3S2KX72   A0A016S1D2   A0A016SSP6   A0A016TH80   A0A016VGM4   A0A016USZ5   A0A0K0FAW8   A0A016VW83   A0A016UGM6   A0A016TXK2   A0A016S5A1   A0A016T4C4   A0A016WPY4   A0A016VTY8   A0A016SGC3   A0A016WVQ3   A0A016UEM0   A0A016WFS9   A0A016T5Z1   A0A016WCB8   A0A016TIA8   A0A016T636   A0A016US53   A0A016VEC1   A0A016ULU9   A0A016VCD9   A0A016URH5   A0A016W1X2   A0A016WYN9   A0A016U6B7   A0A016TK92   A0A016SCL7   A0A016S4R3   A0A016VLP0   A0A016SY13   A0A016WPX9   A0A016TQJ1   A0A016SCZ8   A0A016SWH8   A0A016VGA0   A0A016UJS4   A0A016U123   A0A016WYI0   A0A016S524   A0A016X207   A0A016VT25   A0A016V007   A0A016VMK8   A0A016S7F6   A0A016WQM8   A0A016WUN2   A0A016VPL5   A0A016VBP7   A0A016WJL5   A0A016SX67   A0A016SXL6   A0A016S6J0   A0A016T7J7   A0A016WRX9   A0A016WEQ1  

Pubmed

20470440    28756777    25474469    29023486    25730766   

EMBL

FJ265563    ADI61831.1    FJ265562    ADI61830.1    ODYU01008249    SOQ51673.1    + More
KZ150317    PZC71439.1    KZ150485    PZC70710.1    FJ265564    ADI61832.1    KZ150108    PZC73382.1    FJ265561    ADI61829.1    KZ149907    PZC78256.1    RSAL01002362    RVE40503.1    ODYU01004088    SOQ43598.1    FJ265549    ADI61817.1    FJ265542    ADI61810.1    FJ265545    ADI61813.1    FJ265544    ADI61812.1    GBBI01004876    JAC13836.1    FJ265550    ADI61818.1    FJ265543    ADI61811.1    MRZV01002136    PIK34564.1    FJ265551    ADI61819.1    MRZV01000899    PIK42833.1    KZ149985    PZC75698.1    UZAG01000503    VDO08661.1    AAGJ04050748    JARK01001340    EYC31295.1    JARK01001677    EYB83167.1    EYB83168.1    JARK01001351    EYC23395.1    JARK01001362    EYC18843.1    EYC18844.1    JARK01001423    EYC04578.1    JARK01001349    EYC24735.1    JARK01001361    EYC19034.1    JARK01001344    EYC28218.1    JARK01001341    EYC29807.1    RSAL01002130    RVE40575.1    JARK01001655    EYB84321.1    JARK01001517    EYB93530.1    JARK01001438    EYC02012.1    JARK01001346    EYC26784.1    JARK01001364    EYC18031.1    EYC31302.1    JARK01001378    EYC13977.1    JARK01001406    EYC07496.1    JARK01001630    EYB85641.1    JARK01001475    EYB97550.1    JARK01000173    EYC41342.1    EYC30223.1    JARK01001568    EYB89432.1    JARK01000077    EYC43894.1    JARK01001380    EYC13322.1    JARK01000302    EYC38674.1    JARK01001470    JARK01000204    EYB98082.1    EYC40602.1    JARK01000388    EYC37469.1    JARK01001434    EYC02684.1    EYB98081.1    EYC40601.1    JARK01001365    EYC18010.1    JARK01001348    EYC25048.1    JARK01001370    EYC16150.1    EYC25050.1    EYC18009.1    JARK01001338    EYC33297.1    JARK01000063    EYC44387.1    JARK01001389    EYC10874.1    JARK01001432    EYC03125.1    JARK01001628    JARK01001583    JARK01001528    JARK01001506    JARK01001467    JARK01001463    JARK01001457    JARK01001420    JARK01001403    JARK01001371    JARK01001369    JARK01001360    JARK01001353    JARK01000603    JARK01000080    EYB85741.1    EYB88438.1    EYB92544.1    EYB94540.1    EYB98080.1    EYB98468.1    EYB98899.1    EYB99568.1    EYC03088.1    EYC05014.1    EYC08153.1    EYC15852.1    EYC16408.1    EYC19456.1    EYC22445.1    EYC24734.1    EYC24778.1    EYC24866.1    EYC33488.1    EYC35672.1    EYC43798.1    JARK01001636    EYB85342.1    EYC28216.1    JARK01001497    EYB95322.1    JARK01000161    EYC41641.1    JARK01001421    EYC04912.1    JARK01001581    EYB88505.1    JARK01001502    EYB94855.1    EYC26445.1    JARK01001372    EYC15614.1    JARK01001401    EYC08686.1    JARK01000046    EYC44894.1    EYB85344.1    JARK01000008    EYC46079.1    EYC30744.1    JARK01001357    EYC20551.1    JARK01001343    EYC28635.1    JARK01001612    EYB86585.1    JARK01000165    EYC41537.1    JARK01000109    EYC42952.1    JARK01001342    EYC29360.1    EYC25049.1    JARK01000256    EYC39462.1    JARK01001500    EYB95040.1    EYC28825.1    EYB95049.1    JARK01001618    EYB86258.1    JARK01001736    JARK01001462    JARK01001379    EYB80775.1    EYB98943.1    EYC13646.1    EYC33347.1    JARK01000132    EYC42415.1    JARK01000347    EYC38051.1   

Proteomes

UP000283053    UP000230750    UP000050602    UP000007110    UP000024635    UP000035680    + More

PRIDE

D7F178    D7F177    D7F179    D7F176    D7F164    D7F157    + More
D7F160    D7F159    D7F165    D7F158    D7F166   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF01826   TIL

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR036084   Ser_inhib-like_sf       
IPR002919   TIL_dom       
IPR029052   Metallo-depent_PP-like       
IPR017452   GPCR_Rhodpsn_7TM       

SUPFAM

SSF56219   SSF56219        + More
SSF57567   SSF57567       

Gene 3D

3.60.10.10     3.60.21.10    

ProteinModelPortal

D7F178   D7F177   A0A2H1WF27   A0A2W1B5F8   A0A2W1BCS2   D7F179   + More
A0A2W1BDX2   D7F176   A0A2W1BZV1   A0A3S2TAR4   A0A2H1VS24   D7F164   D7F157   D7F160   D7F159   A0A023EXV2   D7F165   D7F158   A0A2G8JFM9   D7F166   A0A2G8K4F2   A0A2W1BLC9   A0A0R3Q573   W4YXJ0   A0A016VV56   A0A016RYK0   A0A016RXU5   A0A016V7H3   A0A016UWI5   A0A016UTS3   A0A016TQ81   A0A016VBB9   A0A016UUF2   A0A016VN75   A0A016VRX3   A0A3S2KX72   A0A016S1D2   A0A016SSP6   A0A016TH80   A0A016VGM4   A0A016USZ5   A0A0K0FAW8   A0A016VW83   A0A016UGM6   A0A016TXK2   A0A016S5A1   A0A016T4C4   A0A016WPY4   A0A016VTY8   A0A016SGC3   A0A016WVQ3   A0A016UEM0   A0A016WFS9   A0A016T5Z1   A0A016WCB8   A0A016TIA8   A0A016T636   A0A016US53   A0A016VEC1   A0A016ULU9   A0A016VCD9   A0A016URH5   A0A016W1X2   A0A016WYN9   A0A016U6B7   A0A016TK92   A0A016SCL7   A0A016S4R3   A0A016VLP0   A0A016SY13   A0A016WPX9   A0A016TQJ1   A0A016SCZ8   A0A016SWH8   A0A016VGA0   A0A016UJS4   A0A016U123   A0A016WYI0   A0A016S524   A0A016X207   A0A016VT25   A0A016V007   A0A016VMK8   A0A016S7F6   A0A016WQM8   A0A016WUN2   A0A016VPL5   A0A016VBP7   A0A016WJL5   A0A016SX67   A0A016SXL6   A0A016S6J0   A0A016T7J7   A0A016WRX9   A0A016WEQ1  

PDB

5HHL     E-value=0.0313428,     Score=90

KEGG

105841908    no KO assigned | (RefSeq) uncharacterized LOC105841908

GO

GO:0003964   GO:0004519   GO:0016021  

Length:

671

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00433

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00035

outside

1  -  671

 

 

Pi

19.452447

Theta

19.327881

Tajima's D

2.330696

CLR

0.516877

CSRT

0.929703514824259

Interpretation

Uncertain