Gene

KWMTBOMO15795  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000029

Annotation

nucleolar_protein_family_A_member_2_[Bombyx_mori]

Location

Bomo_Chr26(-):10266130-10267560      View in EpiBrowser

Full name

H/ACA ribonucleoprotein complex subunit 2-like protein      

Alternative Name

H/ACA snoRNP protein NHP2
Nucleolar protein family A member 2-like protein

Location in the cell

Cytoplasmic   Reliability : 2.486

CDS

ATGGGTAAAGTAAAGCAAGAACCGGTCGAACAGGAAGACCAGGCTGATGTCAGCATTAAAGCTGAACCGCAAAGCCACGATGAAAAAGTCGAACATTGTAGTATAATAGCGAAACCGATGGCCACAAAAAAACTCACCAAAAAGATATATAAACTTATTAAGAAATCGAGTAACCATAAGAACTATATCAGAAACGGCCTGAAAATCGTTCAGAAGCAGTTACGTCTGGGTGAAAAGGGCATGGTTTTCTTTGCTGGAGACATTTCACCCATAGAAATCATGTGTCACCTACCTGCGGTTTGCGAGGAGAAGGACGTCCAATACTGTTACACTCCAAGTAGGAAGGATATCGGTGCCGCCATGGGTACAATGCGAGGATGCATCATGGTACTTGTCAAAGAACATGAGGATTATAAAGATTTGTACGAGGAAGTTAAAAGTGAAATAAAATTACTCGGACATCCACTGATCTGA

Protein

MGKVKQEPVEQEDQADVSIKAEPQSHDEKVEHCSIIAKPMATKKLTKKIYKLIKKSSNHKNYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKLLGHPLI

Description

Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs (By similarity).

Subunit

Component of the small nucleolar ribonucleoprotein particle containing H/ACA-type snoRNAs (H/ACA snoRNPs).

Similarity

Belongs to the eukaryotic ribosomal protein eL8 family.

Keywords

Complete proteome   Nucleus   Phosphoprotein   Reference proteome   Ribonucleoprotein   Ribosome biogenesis   RNA-binding   rRNA processing  

Feature

chain  H/ACA ribonucleoprotein complex subunit 2-like protein

Uniprot

Q1HPV4   A0A212FBF5   A0A3S2PIY0   A0A2A4JCS7   A0A2W1BF20   S4P2J6   + More
A0A2H1VAY1   A0A0N1IFJ1   A0A194QE04   A0A1E1WNR5   A0A182N2M1   D6X2E6   A0A2M4AMH9   A0A182SQ14   A0A182RQV5   A0A182Y210   A0A182JXP8   A0A2M3ZHQ9   W5JKR9   A0A182FW52   A0A2A3EEF8   A0A088ADB0   A0A182WZA1   A0A182V2J6   A0A182HPV4   Q7Q018   A0A0L0C3X9   A0A182MD06   T1PGT4   Q17FC3   A0A182JBA6   A0A1L8EH37   T1DIY6   A0A0K8TR01   A0A1A9Z1Q9   A0A182TQ25   A0A1A9VMQ7   A0A1A9Y9U8   A0A023EFR1   A0A1B0BWM5   A0A182QYA3   A0A1A9WCS9   B0WDU0   A0A0J7KZV7   A0A182W9D3   A0A1B0FA18   A0A1I8PBN7   A0A336L7X8   A0A026WI95   T1H5M0   E2AUQ3   A0A1Q3F152   W8CAD7   A0A084WHG5   A0A1W4XP98   A0A151WED0   A0A0J9UL49   B4HHT8   M9PCI2   Q9V3U2   A0A0C9R4J3   A0A158NRF7   A0A195BDR6   A0A195FGM8   A0A0H5APS5   A0A0H5AKI8   A0A0M4EDT3   A0A195EEW6   E9IAH3   A0A0H5AKG9   A0A0H5AKJ9   A0A0H5AKH8   A0A0H5ANG0   B4LFM7   A0A1W4U8Z2   A0A151IDQ4   A0A0H5AKJ2   A0A0N8C1G9   C1BUW6   A0A0P5CK34   A0A0H5APT4   A0A0H5AKJ5   A0A310SE07   Q6XIP0   A0A0N8DJB6   A0A0L7RJK3   A0A232FCX2   B4IY17   A0A034WNU4   A0A0K8WEC2   B3MAV5   B3NHJ1   A0A1Y1MBS3   E9H7K6   A0A0P5FIY4   K7IY67   A0A3F2YUW2   B4NM18   B4KXN7   A0A3B0J7D8  

Pubmed

19121390    22118469    28756777    23622113    26354079    18362917    + More
19820115    25244985    20920257    23761445    12364791    14747013    17210077    26108605    25315136    17510324    24330624    26369729    24945155    26483478    24508170    30249741    20798317    24495485    24438588    22936249    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    18327897    21347285    21282665    14525923    28648823    25348373    28004739    21292972    20075255    20966253   

EMBL

BABH01035561    DQ443298    ABF51387.1    AGBW02009344    OWR51060.1    RSAL01000019    + More
RVE52745.1    NWSH01001860    PCG69885.1    KZ150146    PZC72891.1    GAIX01011980    JAA80580.1    ODYU01001334    SOQ37374.1    KQ460273    KPJ16327.1    KQ459144    KPJ03654.1    GDQN01002573    JAT88481.1    KQ971371    EFA09871.1    GGFK01008663    MBW41984.1    GGFM01007343    MBW28094.1    ADMH02001151    ETN63893.1    KZ288271    PBC29854.1    APCN01003277    AAAB01008986    EAA00120.2    JRES01000945    KNC26931.1    AXCM01006131    KA647966    AFP62595.1    CH477272    EAT45222.1    GFDG01000825    JAV17974.1    GALA01000661    JAA94191.1    GDAI01000811    JAI16792.1    JXUM01015996    JXUM01042476    GAPW01005416    KQ561326    KQ560445    JAC08182.1    KXJ78975.1    KXJ82382.1    JXJN01021871    AXCN02001078    DS231901    EDS44877.1    LBMM01001707    KMQ95863.1    CCAG010018114    UFQS01001854    UFQT01001854    SSX12575.1    SSX32018.1    KK107193    QOIP01000002    EZA55683.1    RLU25599.1    GL442872    EFN62852.1    GFDL01013760    JAV21285.1    GAMC01001394    JAC05162.1    ATLV01023814    KE525347    KFB49659.1    KQ983238    KYQ46223.1    CM002912    KMY99630.1    CH480815    EDW41503.1    AE014296    KX531559    AGB94542.1    ANY27369.1    AF217228    BT023752    GBYB01002840    JAG72607.1    ADTU01000402    KQ976509    KYM82711.1    KQ981606    KYN39548.1    LC058863    BAR89708.1    LC058844    LC058849    LC058852    LC058858    BAR89689.1    BAR89694.1    BAR89697.1    BAR89703.1    CP012525    ALC43808.1    KQ979039    KYN23347.1    GL762022    EFZ22450.1    LC058830    LC058831    LC058832    LC058833    LC058835    LC058836    LC058837    LC058838    LC058840    LC058841    LC058842    LC058843    LC058845    LC058847    LC058848    LC058851    LC058855    LC058856    LC058857    LC058860    LC058861    BAR89675.1    BAR89676.1    BAR89677.1    BAR89678.1    BAR89680.1    BAR89681.1    BAR89682.1    BAR89683.1    BAR89685.1    BAR89686.1    BAR89687.1    BAR89688.1    BAR89690.1    BAR89700.1    BAR89705.1    LC058864    LC058865    LC058867    LC058868    LC058870    LC058874    LC058875    LC058876    LC058877    BAR89709.1    BAR89710.1    BAR89712.1    BAR89713.1    BAR89715.1    BAR89719.1    BAR89720.1    BAR89721.1    BAR89722.1    LC058834    LC058853    BAR89679.1    BAR89698.1    LC058862    LC058866    LC058869    LC058871    LC058872    BAR89707.1    BAR89711.1    BAR89714.1    BAR89716.1    BAR89717.1    CH940647    EDW70345.1    KQ977978    KYM98379.1    LC058846    LC058854    BAR89691.1    BAR89699.1    GDIQ01124107    LRGB01000311    JAL27619.1    KZS19787.1    BT078395    BT120685    ACO12819.1    ADD24325.1    GDIP01185056    JAJ38346.1    LC058873    BAR89718.1    LC058839    LC058850    LC058859    BAR89684.1    BAR89695.1    BAR89704.1    KQ760827    OAD58898.1    AY231789    CM000159    GDIP01028119    JAM75596.1    KQ414581    KOC70978.1    NNAY01000399    OXU28654.1    CH916366    EDV97560.1    GAKP01003509    JAC55443.1    GDHF01027221    GDHF01002872    JAI25093.1    JAI49442.1    CH902618    EDV39189.1    CH954178    EDV51786.1    GEZM01037624    JAV82020.1    GL732601    EFX72202.1    GDIQ01256438    JAJ95286.1    CH964278    EDW85386.1    CH933809    EDW19744.1    OUUW01000002    SPP76043.1   

Proteomes

UP000005204    UP000007151    UP000283053    UP000218220    UP000053240    UP000053268    + More
UP000075884    UP000007266    UP000075901    UP000075900    UP000076408    UP000075881    UP000000673    UP000069272    UP000242457    UP000005203    UP000076407    UP000075903    UP000075840    UP000007062    UP000037069    UP000075883    UP000095301    UP000008820    UP000075880    UP000092445    UP000075902    UP000078200    UP000092443    UP000069940    UP000249989    UP000092460    UP000075886    UP000091820    UP000002320    UP000036403    UP000075920    UP000092444    UP000095300    UP000053097    UP000279307    UP000015102    UP000000311    UP000030765    UP000192223    UP000075809    UP000001292    UP000000803    UP000005205    UP000078540    UP000078541    UP000092553    UP000078492    UP000008792    UP000192221    UP000078542    UP000076858    UP000002282    UP000053825    UP000215335    UP000001070    UP000007801    UP000008711    UP000000305    UP000002358    UP000075882    UP000007798    UP000009192    UP000268350   

PRIDE

Q1HPV4    M9PCI2    Q9V3U2   

Pfam

PF01248   Ribosomal_L7Ae

Interpro

IPR002415   H/ACA_rnp_Nhp2_euk        + More
IPR018492   Ribosomal_L7Ae/L8/Nhp2       
IPR029064   L30e-like       
IPR004038   Ribosomal_L7Ae/L30e/S12e/Gad45       
IPR004037   Ribosomal_L7Ae_CS       

SUPFAM

SSF55315   SSF55315       

Gene 3D

3.30.1330.30    

ProteinModelPortal

Q1HPV4   A0A212FBF5   A0A3S2PIY0   A0A2A4JCS7   A0A2W1BF20   S4P2J6   + More
A0A2H1VAY1   A0A0N1IFJ1   A0A194QE04   A0A1E1WNR5   A0A182N2M1   D6X2E6   A0A2M4AMH9   A0A182SQ14   A0A182RQV5   A0A182Y210   A0A182JXP8   A0A2M3ZHQ9   W5JKR9   A0A182FW52   A0A2A3EEF8   A0A088ADB0   A0A182WZA1   A0A182V2J6   A0A182HPV4   Q7Q018   A0A0L0C3X9   A0A182MD06   T1PGT4   Q17FC3   A0A182JBA6   A0A1L8EH37   T1DIY6   A0A0K8TR01   A0A1A9Z1Q9   A0A182TQ25   A0A1A9VMQ7   A0A1A9Y9U8   A0A023EFR1   A0A1B0BWM5   A0A182QYA3   A0A1A9WCS9   B0WDU0   A0A0J7KZV7   A0A182W9D3   A0A1B0FA18   A0A1I8PBN7   A0A336L7X8   A0A026WI95   T1H5M0   E2AUQ3   A0A1Q3F152   W8CAD7   A0A084WHG5   A0A1W4XP98   A0A151WED0   A0A0J9UL49   B4HHT8   M9PCI2   Q9V3U2   A0A0C9R4J3   A0A158NRF7   A0A195BDR6   A0A195FGM8   A0A0H5APS5   A0A0H5AKI8   A0A0M4EDT3   A0A195EEW6   E9IAH3   A0A0H5AKG9   A0A0H5AKJ9   A0A0H5AKH8   A0A0H5ANG0   B4LFM7   A0A1W4U8Z2   A0A151IDQ4   A0A0H5AKJ2   A0A0N8C1G9   C1BUW6   A0A0P5CK34   A0A0H5APT4   A0A0H5AKJ5   A0A310SE07   Q6XIP0   A0A0N8DJB6   A0A0L7RJK3   A0A232FCX2   B4IY17   A0A034WNU4   A0A0K8WEC2   B3MAV5   B3NHJ1   A0A1Y1MBS3   E9H7K6   A0A0P5FIY4   K7IY67   A0A3F2YUW2   B4NM18   B4KXN7   A0A3B0J7D8  

PDB

2LBX     E-value=1.52971e-13,     Score=179

KEGG

732976    K11129 H/ACA ribonucleoprotein complex subunit 2 | (RefSeq) nucleolar protein family A member 2

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)

GO

GO:0005730   GO:0003723   GO:0000469   GO:0034513   GO:0031120   GO:0031429   GO:0000470   GO:0031118   GO:1990904   GO:0042254   GO:0005840   GO:0005732   GO:0005515   GO:0008270   GO:0005215   GO:0006270   GO:0042555   GO:0003707   GO:0006281   GO:0006259  

Subcellular location

  

Length:

157

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01357

Exp number, first 60 AAs:

0

Total prob of N-in:

0.14932

outside

1  -  157

 

 

Pi

103.359744

Theta

110.445381

Tajima's D

-0.206554

CLR

1.494316

CSRT

0.309434528273586

Interpretation

Uncertain