Gene

KWMTBOMO15787

Pre Gene Modal

BGIBMGA000030

Annotation

PREDICTED:_alpha-sarcoglycan_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr26(-):10131261-10141030      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.462 Nuclear   Reliability : 1.161

CDS

ATGGCAAACGCACTGCTATGTTCGGCTTTGCTAACAGCGTGCGTGGTCTCCGCTCAGGTGCATACGGCCGTCGAAACAGAAATGTTCGCTATACCAATCAGCCCTAATTTATTTAATTGGACTTACCAAGAGTTCGACCAGCAGTACCGGTTTCACGCGTCGCTGCTGGGTAAGCCTGAGCTACCACAGTGGCTTCACTATATCTATAGTGGGCGACATCACTCTGGCTTCATATTCGGTACCCCACCCAGAGGCACCGAAGGACCTTTAACGCTGGAAGTAATCGGTTTGAATCGTCAAGATTTTGAGACGCGCCGCGTACTTTTGACACTGAAGGTCGAGAAGAAGGAGAAGATGGCCAGCCACGAAGTCGAGCTGAAGATCGACAACTTGAACGTCGAGGACTTGTTAGACGCACACCGGATGAATCGTTTGAAGGATATTCTGAGGACCAAACTCTGGACGGAAAGCAGTCAAGATCTGTACGCCACGTTCTTAGCTTCGGCCATAGATCTTGGTGCCAGATTGCCGCTGAAACCCAGCGACGGTGAGGGGCTGGTGGTCCGGCTGGGCAGTTCGCACCCGTTCTCGTCCGAACTGAAACGTCTCCGTGAGGAGGTGCGCCCCCTGTCGAAGCTGCCGAGCTGCCCTCGCGACTACAAGAGGACCACAGTCGAAAGACTCTTCAGGGACGCCGGCCTCACCCTTGACTGGTGCAGGTTTGAGCTGTTGAAGACGTACTACAAGCCCCGCTCGACCGTCCAGCTGGAGTACATGAGCGACACCCCGGCGGGGGGGCGGCCCGGGCGCGCCTCCCCCGCCCCCGCCCCCTGGTCGGCGCCGGCGCGGCACTCGCTGCCGACGCGGGGCTACGCGCGGCAACTATCCGCCGTCCTGGCCGCGCCCCTGGCTCTGCTGGCCGTGTCGGTCGCCGCCCTGACCGCGCTGGTCTGTTTCCATTACGCTGCTGTGAACGATCCAGAATCCGAGAGCTTCTTCGAAAACATATTTCACATTTGCATTGAATACAAACAAAGGAGGTTCGATAATTTGGACAAACGCTTTAATGTAATCTAA

Protein

MANALLCSALLTACVVSAQVHTAVETEMFAIPISPNLFNWTYQEFDQQYRFHASLLGKPELPQWLHYIYSGRHHSGFIFGTPPRGTEGPLTLEVIGLNRQDFETRRVLLTLKVEKKEKMASHEVELKIDNLNVEDLLDAHRMNRLKDILRTKLWTESSQDLYATFLASAIDLGARLPLKPSDGEGLVVRLGSSHPFSSELKRLREEVRPLSKLPSCPRDYKRTTVERLFRDAGLTLDWCRFELLKTYYKPRSTVQLEYMSDTPAGGRPGRASPAPAPWSAPARHSLPTRGYARQLSAVLAAPLALLAVSVAALTALVCFHYAAVNDPESESFFENIFHICIEYKQRRFDNLDKRFNVI

Uniprot

H9IS07   A0A0N1I6E3   A0A212FGL7   A0A0N0P9C1   A0A3S2NP66   A0A2W1BF29   + More
A0A1W4WL98   A0A1Y1LMH7   A0A0T6AZN0   D6X1T3   A0A3L8DZW7   F4X4B4   A0A195BQR8   A0A151WR07   A0A158NXP4   A0A151IGS6   A0A195FGI7   A0A195E3Z2   A0A0A9X3D7   A0A0L7QKT0   E2BH32   E0VUX6   B3MPG8   A0A1W4V7Z9   A0A1I8M566   A0A1I8NTR1   A0A1A9WM28   W8CAK4   B4JBV8   A0A0L0CDJ9   Q9GT66   A0A0K8WFJ2   B4MWV3   A0A034WSQ7   B3N734   B4NWV5   A0A0J9QYK6   A0A1B0AEN3   Q9VLQ0   B4HYH9   A0A1B0GCJ3   M9PF78   B4KJM5   A0A0M4E9K5   B4LSH3   A0A0K8V1P1   A0A1A9VMG0   B4G905   T1PIE2   B4Q6P7   Q29MM9   A0A3B0K2H7   A0A1B0BL98   A0A182JW85   A0A182U276   A0A2S2QI50   A0A1A9Y3J8   A0A1S4FE33   A0A182NHD9   A0A1L8D8V4   A0A1L8D8X0   Q7PTB8   U5EQX6   A0A182IPH7  

Pubmed

19121390    26354079    22118469    28756777    28004739    18362917    + More
19820115    30249741    21719571    21347285    25401762    20798317    20566863    17994087    25315136    24495485    26108605    11018515    25348373    17550304    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    17510324    12364791    14747013    17210077   

EMBL

BABH01035559    KQ461188    KPJ07317.1    AGBW02008644    OWR52882.1    KQ459550    + More
KPJ00009.1    RSAL01000019    RVE52751.1    KZ150146    PZC72901.1    GEZM01057630    JAV72207.1    LJIG01022531    KRT80087.1    KQ971371    EFA09965.1    QOIP01000002    RLU26001.1    GL888633    EGI58710.1    KQ976423    KYM88916.1    KQ982815    KYQ50237.1    ADTU01000477    ADTU01000478    ADTU01000479    ADTU01000480    KQ977671    KYN00639.1    KQ981606    KYN39508.1    KQ979685    KYN19801.1    GBHO01029095    GBRD01002079    JAG14509.1    JAG63742.1    KQ414940    KOC59222.1    GL448268    EFN84953.1    DS235797    EEB17182.1    CH902620    EDV31264.2    GAMC01005661    JAC00895.1    CH916368    EDW04061.1    JRES01000536    KNC30335.1    AF277391    AAG17400.1    GDHF01002378    JAI49936.1    CH963857    EDW76592.2    GAKP01001578    GAKP01001575    JAC57377.1    CH954177    EDV59330.2    CM000157    EDW88485.2    CM002910    KMY89031.1    AE014134    AY071690    AAF52634.1    AAL49312.1    CH480818    EDW52109.1    CCAG010021443    AGB92782.1    CH933807    EDW11470.2    CP012523    ALC38901.1    CH940649    EDW64795.2    GDHF01019789    JAI32525.1    CH479180    EDW28835.1    KA648444    AFP63073.1    CM000361    EDX04206.1    CH379060    EAL33664.2    OUUW01000004    SPP79806.1    JXJN01016271    GGMS01008188    MBY77391.1    GFDF01011185    JAV02899.1    GFDF01011186    JAV02898.1    AAAB01008807    EAA04148.5    GANO01004013    JAB55858.1   

Proteomes

UP000005204    UP000053240    UP000007151    UP000053268    UP000283053    UP000192223    + More
UP000007266    UP000279307    UP000007755    UP000078540    UP000075809    UP000005205    UP000078542    UP000078541    UP000078492    UP000053825    UP000008237    UP000009046    UP000007801    UP000192221    UP000095301    UP000095300    UP000091820    UP000001070    UP000037069    UP000007798    UP000008711    UP000002282    UP000092445    UP000000803    UP000001292    UP000092444    UP000009192    UP000092553    UP000008792    UP000078200    UP000008744    UP000000304    UP000001819    UP000268350    UP000092460    UP000075881    UP000075902    UP000092443    UP000075884    UP000007062    UP000075880   

PRIDE

H9IS07    Q9GT66    Q9VLQ0   

Pfam

PF05510   Sarcoglycan_2        + More
PF02544   Steroid_dh

Interpro

IPR013783   Ig-like_fold        + More
IPR015919   Cadherin-like_sf       
IPR008908   Sarcoglycan_alpha/epsilon       
IPR006644   Cadg       
IPR001104   3-oxo-5_a-steroid_4-DH_C       

SUPFAM

SSF49313   SSF49313       

Gene 3D

2.60.40.10    

ProteinModelPortal

H9IS07   A0A0N1I6E3   A0A212FGL7   A0A0N0P9C1   A0A3S2NP66   A0A2W1BF29   + More
A0A1W4WL98   A0A1Y1LMH7   A0A0T6AZN0   D6X1T3   A0A3L8DZW7   F4X4B4   A0A195BQR8   A0A151WR07   A0A158NXP4   A0A151IGS6   A0A195FGI7   A0A195E3Z2   A0A0A9X3D7   A0A0L7QKT0   E2BH32   E0VUX6   B3MPG8   A0A1W4V7Z9   A0A1I8M566   A0A1I8NTR1   A0A1A9WM28   W8CAK4   B4JBV8   A0A0L0CDJ9   Q9GT66   A0A0K8WFJ2   B4MWV3   A0A034WSQ7   B3N734   B4NWV5   A0A0J9QYK6   A0A1B0AEN3   Q9VLQ0   B4HYH9   A0A1B0GCJ3   M9PF78   B4KJM5   A0A0M4E9K5   B4LSH3   A0A0K8V1P1   A0A1A9VMG0   B4G905   T1PIE2   B4Q6P7   Q29MM9   A0A3B0K2H7   A0A1B0BL98   A0A182JW85   A0A182U276   A0A2S2QI50   A0A1A9Y3J8   A0A1S4FE33   A0A182NHD9   A0A1L8D8V4   A0A1L8D8X0   Q7PTB8   U5EQX6   A0A182IPH7  

KEGG

101743074    no KO assigned | (RefSeq) epsilon-sarcoglycan

GO

GO:0016012   GO:0016021   GO:0005509   GO:0008307   GO:0016627   GO:0006629   GO:0016020   GO:0008270   GO:0005215   GO:0006270   GO:0042555   GO:0003707   GO:0006281   GO:0006259  

PANTHER

PTHR10132  

SignalP

Position:   1 - 18,         Likelihood:  0.974021

 

 

Length:

358

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.41321

Exp number, first 60 AAs:

1.56562

Total prob of N-in:

0.22846

outside

1  -  296

TMhelix

297  -  319

inside

320  -  358

 

 

Pi

249.503472

Theta

21.100998

Tajima's D

-1.401023

CLR

114.274486

CSRT

0.0750462476876156

Interpretation

Uncertain