Gene

KWMTBOMO15776

Pre Gene Modal

BGIBMGA002234

Annotation

PREDICTED:_protein_glass_[Papilio_xuthus]

Location

Bomo_Chr26(-):9698476-9701977      View in EpiBrowser

Full name

Protein glass      

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 4.612

CDS

ATGCAAGAAGGACATAAAGACCAGGGTGCGGGAGGCGGGTTCATAATGAACCACCAAACATCAATGCACCCACAGGACTACGATTATTCTGCTTGTGTGAGCGCGGGGAAAGTTCAGGTGGGAGCTTTAAGCGGATGTTCGGAAGACGACGAACAAAAGCCTAACTTATGTCGTATTTGCGGTAAGACTTACGCCCGGCCTAGCACTTTGAAGACCCACCTTCGGACGCATTCGGGTGAGCGGCCGTATCGCTGTGGGGATTGCAACAAGAGCTTCTCCCAGGCTGCTAACTTGACGGCTCATGTCAGGACGCATACGGGACAGAAGCCTTTCAGATGTCCTATCTGCGATCGAAGGTTTAGCCAAAGCTCCAGCGTGACGACACACATGCGGACGCATTCAGGGGAGCGACCCTATCAATGCAGATCATGCAAAAAAGCATTTTCAGATAGCTCGACGTTGACCAAGCACCTCCGGATACACTCCGGAGAGAAACCTTATCAATGCAAACTCTGTTTATTGAGATTTTCGCAATCTGGCAATCTGAACCGTCACATGCGAGTCCACGGTAACATGTCGGCAGGGATGCTCGGCTGA

Protein

MQEGHKDQGAGGGFIMNHQTSMHPQDYDYSACVSAGKVQVGALSGCSEDDEQKPNLCRICGKTYARPSTLKTHLRTHSGERPYRCGDCNKSFSQAANLTAHVRTHTGQKPFRCPICDRRFSQSSSVTTHMRTHSGERPYQCRSCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVHGNMSAGMLG

Description

Transcription factor required for gene expression specific to photoreceptor cells.

Keywords

Alternative splicing   Complete proteome   DNA-binding   Metal-binding   Nucleus   Reference proteome   Repeat   Sensory transduction   Transcription   Transcription regulation   Vision   Zinc   Zinc-finger  

Feature

chain  Protein glass
splice variant  In isoform B.

Uniprot

A0A2H1WGB0   A0A194QCK3   A0A0N1INI8   A0A212EPA9   A0A182R8E9   A0A1W4XKU7   + More
A0A0A1WJX5   A0A182SV13   W8BC86   D6X386   Q7Z1F3   A0A1W4XJY2   A0A182J6D3   A0A0P4WLG9   A0A182LZI8   A0A182QEC2   A0A1B0BJC9   A0A182HVH0   A0A182WUX9   A0A1S4GKN6   A0A1S3DFF5   A0A240PLZ4   E0VZC5   Q7PQ71   A0A1I8PZC2   A0A1A9XZA7   N6UB25   A0A1A9ZXM5   A0A1B0F9Q2   A0A034V7D5   W8B0H6   A0A0K8U0A7   A0A1A9VEQ7   A0A1I8N8P7   A0A1A9W3I8   B0WGR9   A0A0C9RJI0   P13360   B3NZ66   B4I295   A0A1W4U8E4   B4QUF3   A0A0L0C951   A0A0M5J936   Q24732   A0A0B4KGX3   B4G5D2   A0A195D0J0   F4X7S6   A0A3L8DSB0   A0A3B0K1A5   A0A1J1J1G1   A0A3S5CZE0   B4PLB6   H9IYA1   B4K932   B4N9D5   A0A2S2PFP8   A0A195E624   A0A158NPF2   B3LWA4   A0A195B9A9   A0A151WRJ7   K7INJ2   A0A195ETV9   A0A2H8TJR6   J9K6U8   Q299L5   A0A0L8GP86   T1IIQ5   R7TLC5   A0A2A3E3M7   A0A087ZWL4   A0A226DFR0   A0A154PJV1   A0A310S8X9   V4B2M4   A0A0P6HKI8   A0A0P6CM08   K1QUI9   A0A164VPL5   A0A0P5W7U5   A0A336LRC9   A0A0L7R2H0   A0A2T7PAV1   D2XMT2   A0A1B0GH94   A0A3S1B573   B7QJK4   V9PPG3  

Pubmed

26354079    22118469    25830018    24495485    18362917    19820115    + More
15081356    12364791    20566863    23537049    25348373    25315136    2770860    10731132    12537572    12537569    7604032    17994087    26108605    12537568    12537573    12537574    16110336    17569856    17569867    21719571    30249741    17550304    19121390    21347285    20075255    15632085    23254933    22992520    24337300   

EMBL

ODYU01008467    SOQ52101.1    KQ459193    KPJ03149.1    KQ461188    KPJ07327.1    + More
AGBW02013496    OWR43328.1    GBXI01015301    JAC98990.1    GAMC01011947    JAB94608.1    KQ971372    EFA10761.1    AY293621    AAP46162.1    GDRN01037995    JAI67273.1    AXCM01000299    AXCM01000300    AXCN02001183    JXJN01015358    JXJN01015359    APCN01005776    APCN01005777    AAAB01008898    DS235851    EEB18731.1    EAA09224.6    APGK01041747    APGK01041748    KB740997    ENN75837.1    CCAG010019856    GAKP01020910    JAC38042.1    GAMC01011950    JAB94605.1    GDHF01032162    JAI20152.1    DS231928    EDS27145.1    GBYB01008360    JAG78127.1    X15400    AE014297    AY060322    CH954181    EDV48608.1    CH480820    EDW54652.1    CM000364    EDX12453.1    JRES01000835    KNC27919.1    CP012526    ALC46098.1    U39746    CH940652    AGB96088.1    CH479179    EDW24798.1    KQ977004    KYN06433.1    GL888890    EGI57499.1    QOIP01000005    RLU22648.1    OUUW01000013    SPP88014.1    CVRI01000066    CRL06176.1    LR129951    VDH80593.1    CM000160    EDW95898.2    BABH01020889    CH933806    EDW14445.2    CH964232    EDW80568.2    GGMR01015641    MBY28260.1    KQ979608    KYN20304.1    ADTU01022477    ADTU01022478    CH902617    EDV42682.2    KQ976542    KYM81121.1    KQ982807    KYQ50427.1    KQ981965    KYN31678.1    GFXV01002465    MBW14270.1    ABLF02024975    ABLF02024982    ABLF02026914    ABLF02026922    ABLF02046262    ABLF02049869    CM000070    EAL27688.3    KQ420924    KOF78841.1    JH430212    AMQN01012256    KB309404    ELT94479.1    KZ288438    PBC25749.1    LNIX01000020    OXA44043.1    KQ434938    KZC12161.1    KQ768431    OAD53168.1    KB203854    ESO82734.1    GDIQ01017738    JAN76999.1    GDIP01000177    JAN03539.1    JH815769    EKC25221.1    LRGB01001361    KZS12527.1    GDIP01103332    JAM00383.1    UFQT01000116    SSX20345.1    KQ414666    KOC65072.1    PZQS01000005    PVD30554.1    GU211202    ADB22419.1    AJWK01004101    AJWK01004102    RQTK01000406    RUS80191.1    ABJB010072605    ABJB010191938    ABJB010215013    ABJB010372482    ABJB010542432    ABJB010587243    ABJB010953027    ABJB011031429    DS953043    EEC19026.1    KF317326    AHA51260.1   

Proteomes

UP000053268    UP000053240    UP000007151    UP000075900    UP000192223    UP000075901    + More
UP000007266    UP000075880    UP000075883    UP000075886    UP000092460    UP000075840    UP000076407    UP000079169    UP000075885    UP000009046    UP000007062    UP000095300    UP000092443    UP000019118    UP000092445    UP000092444    UP000078200    UP000095301    UP000091820    UP000002320    UP000000803    UP000008711    UP000001292    UP000192221    UP000000304    UP000037069    UP000092553    UP000008792    UP000008744    UP000078542    UP000007755    UP000279307    UP000268350    UP000183832    UP000002282    UP000005204    UP000009192    UP000007798    UP000078492    UP000005205    UP000007801    UP000078540    UP000075809    UP000002358    UP000078541    UP000007819    UP000001819    UP000053454    UP000014760    UP000242457    UP000005203    UP000198287    UP000076502    UP000030746    UP000005408    UP000076858    UP000053825    UP000245119    UP000092461    UP000271974    UP000001555   

PRIDE

P13360    H9IYA1   

Pfam

PF00096   zf-C2H2        + More
PF16622   zf-C2H2_11
PF00005   ABC_tran
PF06472   ABC_membrane_2

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
IPR003656   Znf_BED       
IPR041697   Znf-C2H2_11       
IPR027764   Zfp18       
IPR031237   ALDP       
IPR003593   AAA+_ATPase       
IPR011527   ABC1_TM_dom       
IPR027417   P-loop_NTPase       
IPR036640   ABC1_TM_sf       
IPR003439   ABC_transporter-like       

SUPFAM

SSF57667   SSF57667        + More
SSF52540   SSF52540       
SSF90123   SSF90123       

ProteinModelPortal

A0A2H1WGB0   A0A194QCK3   A0A0N1INI8   A0A212EPA9   A0A182R8E9   A0A1W4XKU7   + More
A0A0A1WJX5   A0A182SV13   W8BC86   D6X386   Q7Z1F3   A0A1W4XJY2   A0A182J6D3   A0A0P4WLG9   A0A182LZI8   A0A182QEC2   A0A1B0BJC9   A0A182HVH0   A0A182WUX9   A0A1S4GKN6   A0A1S3DFF5   A0A240PLZ4   E0VZC5   Q7PQ71   A0A1I8PZC2   A0A1A9XZA7   N6UB25   A0A1A9ZXM5   A0A1B0F9Q2   A0A034V7D5   W8B0H6   A0A0K8U0A7   A0A1A9VEQ7   A0A1I8N8P7   A0A1A9W3I8   B0WGR9   A0A0C9RJI0   P13360   B3NZ66   B4I295   A0A1W4U8E4   B4QUF3   A0A0L0C951   A0A0M5J936   Q24732   A0A0B4KGX3   B4G5D2   A0A195D0J0   F4X7S6   A0A3L8DSB0   A0A3B0K1A5   A0A1J1J1G1   A0A3S5CZE0   B4PLB6   H9IYA1   B4K932   B4N9D5   A0A2S2PFP8   A0A195E624   A0A158NPF2   B3LWA4   A0A195B9A9   A0A151WRJ7   K7INJ2   A0A195ETV9   A0A2H8TJR6   J9K6U8   Q299L5   A0A0L8GP86   T1IIQ5   R7TLC5   A0A2A3E3M7   A0A087ZWL4   A0A226DFR0   A0A154PJV1   A0A310S8X9   V4B2M4   A0A0P6HKI8   A0A0P6CM08   K1QUI9   A0A164VPL5   A0A0P5W7U5   A0A336LRC9   A0A0L7R2H0   A0A2T7PAV1   D2XMT2   A0A1B0GH94   A0A3S1B573   B7QJK4   V9PPG3  

PDB

2I13     E-value=2.08855e-31,     Score=335

KEGG

101736081    K09214 glass | (RefSeq) protein glass

GO

GO:0003676   GO:0003677   GO:0006355   GO:0001751   GO:0060086   GO:0043153   GO:0046872   GO:0005634   GO:0010114   GO:0009649   GO:0007601   GO:0007605   GO:0046530   GO:0045944   GO:0035271   GO:0001752   GO:0001745   GO:0000981   GO:0050896   GO:0016021   GO:0005524   GO:0042626   GO:0006468   GO:0008270   GO:0005215   GO:0006270   GO:0042555   GO:0003707   GO:0006281   GO:0006259  

PANTHER

PTHR23226:SF190   PTHR11384:SF21  

Subcellular location

Nucleus  

Length:

198

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.13784

outside

1  -  198

 

 

Pi

22.436881

Theta

27.989591

Tajima's D

-0.585555

CLR

0.487542

CSRT

0.223738813059347

Interpretation

Uncertain