Gene

KWMTBOMO15754  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002335

Annotation

PREDICTED:_ER_membrane_protein_complex_subunit_6_[Amyelois_transitella]

Location

Bomo_Chr26(+):9109943-9110961      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.509

CDS

ATGTCTGCTGTGACGAAATTCAAAGAAAACAAGCCAGAGCCTGTGGCTTACAGTGAAGCAGCTCTCAGAAACAATGCGGTGGTTGTCGAATACTGTCGTACTTCTATGGCTGCATTGTCAGGATCCACTGCAGGTGTTCTTGGTCTCACTGGGCTCAATGGCTTTGCATTCTACGTGTTTGCAGTTGTAATGCTCTGGATAATGTTCTTAGTCAAAGTTGGACCACATTGGAGCAAGTATTTTATAACCAGACAGAGTGTTCTGACAAATGGATTCTTTGGAGCATTATTTACATATGTACTATTTTGGACGTTCATTTATGGGATGGTTCATGTTTATTAG

Protein

MSAVTKFKENKPEPVAYSEAALRNNAVVVEYCRTSMAALSGSTAGVLGLTGLNGFAFYVFAVVMLWIMFLVKVGPHWSKYFITRQSVLTNGFFGALFTYVLFWTFIYGMVHVY

Uniprot

H9IYK1   A0A1E1WET4   A0A212FHM2   A0A3S2LS97   A0A194QI03   S4P117   + More
A0A0N1IDM6   A0A2A4J3N4   A0A0P4VW74   R4FLD9   B0WGS0   Q17A45   A0A023EEV8   A0A1Q3FCA9   A0A1B6M569   A0A1B6FSM6   A0A1B6K0B6   A0A2P6K6V8   T1E8U5   A0A2M3ZAW9   A0A2M4AW89   A0A2M4C4U1   A0A2M4CT17   A0A2M4ART0   A0A182F8G3   A0A182JIL6   A0A1L8D8R7   A0A1L8D913   A0A182QXX8   A0A182S9W7   A0A182YJM4   A0A182W317   A0A2L2YD76   A0A182UQJ4   A0A182K0C4   A0A182WUY0   Q7QAA6   A0A182HVG9   D6X1P6   U5EQP1   A0A2S2NX49   A0A182NCM6   A0A182P3H6   A0A2H8TUX2   J9K7X6   A0A0K8TPW4   T1E3A5   A0A1B0CM13   A0A336LGR0   A0A087SVG2   A0A1B0GN07   A0A1S3DKJ4   A0A158NZM1   A0A1B6DAU0   A0A336KFU5   A0A2M4AY62   A0A1W4V8S0   A0A3B0K5U4   Q299T5   B4G5Q1   B4IJD5   B3P6U3   V4AS49   Q9VBZ8   N6TPT2   T1HRU1   B4PUZ8   A0A0A9W329   A0A2M4CRW7   Q8MS26   B3LWZ1   B4LX21   A0A023F8V8   A0A069DMS5   B4QU88   A0A1W4XPC9   A0A0K8S6A7   B4K0Z6   A0A2H8TD79   A0A084WR12   B4NH66   E9G9M4   A0A0N8BAG0   A0A0N8AR18   A0A0N7ZBM7   K7IXS4   Q4PMA9   A0A224YQ39   A0A0K8RIN1   A0A023G5F1   G3MN26   A0A023G085   A0A0P6HZW3   L7MC88   A0A132AGS7   A0A2P2I2G1   A0A0P6BI88   A0A1E1WY45   A0A210R1G3   A0A023FQR6  

Pubmed

19121390    22118469    26354079    23622113    27129103    17510324    + More
24945155    26483478    25244985    26561354    12364791    14747013    17210077    18362917    19820115    26369729    24330624    21347285    15632085    17994087    23254933    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    23537049    17550304    25401762    26823975    25474469    26334808    24438588    21292972    20075255    16431279    28797301    22216098    25576852    26555130    28503490    28812685   

EMBL

BABH01020833    GDQN01005551    GDQN01002021    JAT85503.1    JAT89033.1    AGBW02008500    + More
OWR53217.1    RSAL01000019    RVE52777.1    KQ458761    KPJ05188.1    GAIX01009096    JAA83464.1    KQ461111    KPJ08927.1    NWSH01003549    PCG66124.1    GDKW01001660    JAI54935.1    GAHY01001448    JAA76062.1    DS231928    DS232003    EDS27146.1    EDS31338.1    CH477340    EAT43119.1    JXUM01052080    JXUM01143301    GAPW01006212    GAPW01006211    GAPW01006210    KQ569571    KQ561717    JAC07386.1    KXJ68587.1    KXJ77733.1    GFDL01009831    JAV25214.1    GEBQ01008898    JAT31079.1    GECZ01016648    JAS53121.1    GECU01003113    JAT04594.1    MWRG01023155    PRD22059.1    GAMD01002448    JAA99142.1    GGFM01004928    MBW25679.1    GGFK01011742    MBW45063.1    GGFJ01010857    MBW59998.1    GGFL01004318    MBW68496.1    GGFK01010162    MBW43483.1    GFDF01011246    JAV02838.1    GFDF01011247    JAV02837.1    AXCN02001183    IAAA01013194    IAAA01013195    IAAA01013196    LAA06093.1    AAAB01008898    EAA09308.4    EAL40511.4    APCN01005775    KQ971371    EFA10138.1    GANO01003200    JAB56671.1    GGMR01008929    MBY21548.1    GFXV01005173    MBW16978.1    ABLF02011535    GDAI01001432    JAI16171.1    GALA01000545    JAA94307.1    AJWK01018028    AJWK01018029    UFQS01005498    UFQT01005498    SSX16830.1    SSX36010.1    KK112145    KFM56851.1    AJVK01012812    ADTU01004755    GEDC01014500    JAS22798.1    UFQS01000375    UFQT01000375    SSX03331.1    SSX23697.1    GGFK01012418    MBW45739.1    OUUW01000005    SPP80351.1    CM000070    EAL27616.1    CH479179    EDW24917.1    CH480848    EDW51126.1    CH954182    EDV53763.1    KB200869    ESP00083.1    AE014297    AAF56378.1    APGK01058789    KB741292    ENN70301.1    ACPB03006759    CM000160    EDW98847.1    GBHO01042736    GBRD01017035    GDHC01004869    JAG00868.1    JAG48792.1    JAQ13760.1    GGFL01003430    MBW67608.1    AY119134    AAM50994.1    CH902617    EDV43830.1    CH940650    EDW67768.1    GBBI01000852    JAC17860.1    GBGD01003541    JAC85348.1    CM000364    EDX14325.1    GBRD01017034    JAG48793.1    CH916658    EDV90850.1    GFXV01000261    MBW12066.1    ATLV01025884    KE525402    KFB52656.1    CH964272    EDW84563.1    GL732536    EFX83850.1    GDIQ01196979    JAK54746.1    GDIQ01251315    GDIQ01192079    GDIP01069069    JAK00410.1    JAM34646.1    GDRN01081102    JAI62080.1    DQ066218    AAY66855.1    GFPF01008562    MAA19708.1    GADI01005205    GADI01002823    JAA70985.1    GBBM01006389    JAC29029.1    JO843277    AEO34894.1    GBBL01000902    JAC26418.1    GDIQ01019496    JAN75241.1    GACK01003183    JAA61851.1    JXLN01014733    KPM10206.1    IACF01002563    LAB68212.1    GDIP01017430    JAM86285.1    GFAC01007492    JAT91696.1    NEDP02000883    OWF54784.1    GBBK01001517    JAC22965.1   

Proteomes

UP000005204    UP000007151    UP000283053    UP000053268    UP000053240    UP000218220    + More
UP000002320    UP000008820    UP000069940    UP000249989    UP000069272    UP000075880    UP000075886    UP000075901    UP000076408    UP000075920    UP000075903    UP000075881    UP000076407    UP000007062    UP000075840    UP000007266    UP000075884    UP000075885    UP000007819    UP000092461    UP000054359    UP000092462    UP000079169    UP000005205    UP000192221    UP000268350    UP000001819    UP000008744    UP000001292    UP000008711    UP000030746    UP000000803    UP000019118    UP000015103    UP000002282    UP000007801    UP000008792    UP000000304    UP000192223    UP000001070    UP000030765    UP000007798    UP000000305    UP000002358    UP000242188   

PRIDE

H9IYK1    Q9VBZ8    Q8MS26   

Pfam

PF07019   Rab5ip

Interpro

IPR008504   Emc6        + More
IPR029008   Rab5IP_fam       
IPR006594   LisH       
IPR039724   WDR91       

ProteinModelPortal

H9IYK1   A0A1E1WET4   A0A212FHM2   A0A3S2LS97   A0A194QI03   S4P117   + More
A0A0N1IDM6   A0A2A4J3N4   A0A0P4VW74   R4FLD9   B0WGS0   Q17A45   A0A023EEV8   A0A1Q3FCA9   A0A1B6M569   A0A1B6FSM6   A0A1B6K0B6   A0A2P6K6V8   T1E8U5   A0A2M3ZAW9   A0A2M4AW89   A0A2M4C4U1   A0A2M4CT17   A0A2M4ART0   A0A182F8G3   A0A182JIL6   A0A1L8D8R7   A0A1L8D913   A0A182QXX8   A0A182S9W7   A0A182YJM4   A0A182W317   A0A2L2YD76   A0A182UQJ4   A0A182K0C4   A0A182WUY0   Q7QAA6   A0A182HVG9   D6X1P6   U5EQP1   A0A2S2NX49   A0A182NCM6   A0A182P3H6   A0A2H8TUX2   J9K7X6   A0A0K8TPW4   T1E3A5   A0A1B0CM13   A0A336LGR0   A0A087SVG2   A0A1B0GN07   A0A1S3DKJ4   A0A158NZM1   A0A1B6DAU0   A0A336KFU5   A0A2M4AY62   A0A1W4V8S0   A0A3B0K5U4   Q299T5   B4G5Q1   B4IJD5   B3P6U3   V4AS49   Q9VBZ8   N6TPT2   T1HRU1   B4PUZ8   A0A0A9W329   A0A2M4CRW7   Q8MS26   B3LWZ1   B4LX21   A0A023F8V8   A0A069DMS5   B4QU88   A0A1W4XPC9   A0A0K8S6A7   B4K0Z6   A0A2H8TD79   A0A084WR12   B4NH66   E9G9M4   A0A0N8BAG0   A0A0N8AR18   A0A0N7ZBM7   K7IXS4   Q4PMA9   A0A224YQ39   A0A0K8RIN1   A0A023G5F1   G3MN26   A0A023G085   A0A0P6HZW3   L7MC88   A0A132AGS7   A0A2P2I2G1   A0A0P6BI88   A0A1E1WY45   A0A210R1G3   A0A023FQR6  

KEGG

101740709    no KO assigned | (RefSeq) ER membrane protein complex subunit 6

GO

GO:0072546   GO:0016021   GO:0000045   GO:0034975   GO:0043551   GO:0005829   GO:0045022  

PANTHER

PTHR20994   PTHR13083  

Length:

113

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

46.16581

Exp number, first 60 AAs:

14.04285

Total prob of N-in:

0.39300

POSSIBLE N-term signal

sequence

inside

1  -  45

TMhelix

46  -  68

outside

69  -  87

TMhelix

88  -  110

inside

111  -  113

 

 

Pi

213.7892

Theta

175.324603

Tajima's D

0.690186

CLR

7.141618

CSRT

0.573071346432678

Interpretation

Uncertain