Gene

KWMTBOMO15749

Pre Gene Modal

BGIBMGA002331

Annotation

PREDICTED:_uncharacterized_protein_LOC106134603_[Amyelois_transitella]

Location

Bomo_Chr26(+):8839489-8863792      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 3.82

CDS

ATGAAGCTCAATCTATTCAAGAGGTCCATGATATTCGCTACGTTTTTCGGTTCGTGTCTGTGTATAGCTTTGATCGTGGGATCGTTGGGCACGACTCATTGGGTCGATGCGAGAGCGAGAAAGACTTCTTTCCCCCTAAAGACTGACGGCAGAATCAACTTTGGCCTCTTCGAGGGCCACAGGGAGTTGAACGTCACTTACGGCCGGAGGAATTATGATATAAGCGTGAAAGCCGGTAATCATCCAGCTCGTCGCTGGGCGTGGTGTGGCACAGCGGCCTTGTTGGGCGCAGCCTTGCTCTGTTCGGGCGGGTCGTGTGTATTAGCGGCACTAGGGTCTGCGGCCCGCACGAGATGTTCCCCCAAACCTCTCCTAGTTGGGAACACGTTGGCTGTGGTGTTCACCCTCGGAGCCATAGCTGTGTGGCTGACGGAATACTTCCTGAGGCTGCAGCACAACGTCATGTCGGACGCTGACCTAGCCCAAACCTGGTCCTCGGAAGGCATGGCGGACTTGGGTATCTCTTTCTGGTTGGTCGTTGCGGCCGCCATAGCCGCCTTCGTCAATGACGTCTGCATACTGATAGCCACCGCCGACGGACGGGACGCCGACACGATAGCACCAGCACTAGAGGAAAAAGTCAACGGAGCCATCATGCTTTATTAA

Protein

MKLNLFKRSMIFATFFGSCLCIALIVGSLGTTHWVDARARKTSFPLKTDGRINFGLFEGHRELNVTYGRRNYDISVKAGNHPARRWAWCGTAALLGAALLCSGGSCVLAALGSAARTRCSPKPLLVGNTLAVVFTLGAIAVWLTEYFLRLQHNVMSDADLAQTWSSEGMADLGISFWLVVAAAIAAFVNDVCILIATADGRDADTIAPALEEKVNGAIMLY

Subunit

The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.

Similarity

Belongs to the histone H2A family.

Uniprot

H9IYJ7   A0A2H1V562   A0A3S2LFP5   A0A0N1I8D8   A0A194QJU4   A0A212EL20   + More
S4PZK0   A0A2A4KAQ0   D6X0N9   A0A1Y1L5N9   A0A0T6AYU0   A0A067R665   A0A2J7R2W5   A0A1B6CVX2   A0A1B6K2J4   A0A1B6LYA0   U4TXE1   A0A1B6FQ71   T1HLX7   A0A224XVX5   R4FM06   A0A0K8S9F7   A0A0A9YDZ1   A0A0V0GA35   E9H2J4   A0A0P4VSI2   A0A0N7ZQH6   A0A151I9K4   A0A0P6B2K0   A0A158NNK7   C4WT17   J9K3K9   E2BLB7   A0A2S2N8B3   E2AJA0   F4WQJ9   A0A195F6Q2   A0A195DKU1   A0A0P5ZB80   A0A195B377   A0A154NYS0   A0A3L8E0P9   A0A0P5DD00   A0A310SES5   A0A0L7R857   A0A2A3E594   A0A088A5C1   A0A026WKX9   A0A0P4XSL5   E0W0B7   A0A151X955   A0A182IKI4   U5ER10   A0A1D2ND48   K7IY34   B4NIE2   A0A1A9XG36   A0A1B0BEF4   A0A0L0CH61   A0A226DM14   A0A1A9WY22   A0A1S3D6R8   A0A0P5CXV7   A0A1L8D9Y8   A0A1A9Z9J2   A0A0K8TNR9   B4K6W4   B3LY06   A0A182YQX2   A0A1A9UJS4   A0A1I8N2H4   A0A0N8BCI1   A0A182SRC3   A0A182NN04   W5JE58   A0A1I8PUX5   A0A182VPM7   A0A182REE6   A0A1Q3EYQ5   A0A182Q8X4   A0A182TFM3   B0WVM7   A0A182VJ21   A0A182LNL2   A0A182X476   Q7Q7M4   A0A182IDD4   A0A232ETT2   A0A0A1WEE6   A0A1W4VLM3   B4JGF2   A0A0M8ZNZ8   B4MC21   A0A182PV96   A0A3B0K1V3   A0A2R7VY78   A0A023EK95   A0A034VMP1   A0A0K8V884  

Pubmed

19121390    26354079    22118469    23622113    18362917    19820115    + More
28004739    24845553    23537049    25401762    26823975    21292972    27129103    21347285    20798317    21719571    30249741    24508170    20566863    27289101    20075255    17994087    26108605    26369729    25244985    25315136    20920257    23761445    20966253    12364791    14747013    17210077    28648823    25830018    24945155    26483478    25348373   

EMBL

BABH01020808    ODYU01000560    SOQ35522.1    RSAL01000019    RVE52783.1    KQ460794    + More
KPJ12186.1    KQ458761    KPJ05185.1    AGBW02014148    OWR42186.1    GAIX01001403    JAA91157.1    NWSH01000019    PCG80732.1    KQ971371    EFA10001.2    GEZM01063732    JAV68989.1    LJIG01022501    KRT80234.1    KK852669    KDR18874.1    NEVH01007825    PNF35163.1    GEDC01019646    JAS17652.1    GECU01002041    JAT05666.1    GEBQ01011324    JAT28653.1    KB631805    ERL86274.1    GECZ01017470    JAS52299.1    ACPB03014358    GFTR01003754    JAW12672.1    GAHY01001178    JAA76332.1    GBRD01015910    JAG49916.1    GBHO01013750    GBHO01013748    GDHC01020983    JAG29854.1    JAG29856.1    JAP97645.1    GECL01001492    JAP04632.1    GL732586    EFX74054.1    GDKW01001172    JAI55423.1    GDIP01222529    JAJ00873.1    KQ978273    KYM95750.1    GDIP01021080    JAM82635.1    ADTU01021645    ADTU01021646    ADTU01021647    AK340424    BAH71037.1    ABLF02035713    GL449017    EFN83469.1    GGMR01000845    MBY13464.1    GL439967    EFN66540.1    GL888273    EGI63526.1    KQ981744    KYN36275.1    KQ980765    KYN13457.1    GDIP01047973    JAM55742.1    KQ976641    KYM78720.1    KQ434783    KZC04819.1    QOIP01000001    RLU26290.1    GDIP01157959    JAJ65443.1    KQ777311    OAD52128.1    KQ414633    KOC67029.1    KZ288364    PBC26865.1    KK107159    EZA56707.1    GDIP01241348    JAI82053.1    DS235858    EEB19073.1    KQ982383    KYQ56916.1    GANO01003989    JAB55882.1    LJIJ01000085    ODN03161.1    CH964272    EDW83724.2    JXJN01012890    JRES01000409    KNC31576.1    LNIX01000017    OXA45697.1    GDIP01163906    JAJ59496.1    GFDF01010907    JAV03177.1    GDAI01001815    JAI15788.1    CH933806    EDW15251.2    CH902617    EDV42862.1    GDIQ01191211    JAK60514.1    ADMH02001410    ETN62642.1    GFDL01014626    JAV20419.1    AXCN02002206    DS232128    EDS35634.1    AAAB01008952    EAA10580.3    APCN01005960    NNAY01002259    OXU21706.1    GBXI01017211    GBXI01010728    GBXI01006860    JAC97080.1    JAD03564.1    JAD07432.1    CH916369    EDV92621.1    KQ435962    KOX67967.1    CH940656    EDW58642.2    OUUW01000014    SPP88285.1    KK854166    PTY12454.1    JXUM01094522    JXUM01094523    JXUM01094524    JXUM01094525    GAPW01004046    KQ564134    JAC09552.1    KXJ72719.1    GAKP01016151    GAKP01016150    GAKP01016149    JAC42803.1    GDHF01028700    GDHF01018275    GDHF01017336    GDHF01014790    GDHF01004142    JAI23614.1    JAI34039.1    JAI34978.1    JAI37524.1    JAI48172.1   

Proteomes

UP000005204    UP000283053    UP000053240    UP000053268    UP000007151    UP000218220    + More
UP000007266    UP000027135    UP000235965    UP000030742    UP000015103    UP000000305    UP000078542    UP000005205    UP000007819    UP000008237    UP000000311    UP000007755    UP000078541    UP000078492    UP000078540    UP000076502    UP000279307    UP000053825    UP000242457    UP000005203    UP000053097    UP000009046    UP000075809    UP000075880    UP000094527    UP000002358    UP000007798    UP000092443    UP000092460    UP000037069    UP000198287    UP000091820    UP000079169    UP000092445    UP000009192    UP000007801    UP000076408    UP000078200    UP000095301    UP000075901    UP000075884    UP000000673    UP000095300    UP000075920    UP000075900    UP000075886    UP000075902    UP000002320    UP000075903    UP000075882    UP000076407    UP000007062    UP000075840    UP000215335    UP000192221    UP000001070    UP000053105    UP000008792    UP000075885    UP000268350    UP000069940    UP000249989   

PRIDE

H9IYJ7   

Pfam

PF06653   Claudin_3        + More
PF00125   Histone
PF16211   Histone_H2A_C

Interpro

IPR026748   Clarin        + More
IPR009545   Claudin-like       
IPR011990   TPR-like_helical_dom_sf       
IPR013026   TPR-contain_dom       
IPR019734   TPR_repeat       
IPR032458   Histone_H2A_CS       
IPR002119   Histone_H2A       
IPR032454   Histone_H2A_C       
IPR007125   Histone_H2A/H2B/H3       
IPR009072   Histone-fold       

SUPFAM

SSF48452   SSF48452        + More
SSF47113   SSF47113       

Gene 3D

1.25.40.10     1.10.20.10    

CDD

cd00074  H2A

ProteinModelPortal

H9IYJ7   A0A2H1V562   A0A3S2LFP5   A0A0N1I8D8   A0A194QJU4   A0A212EL20   + More
S4PZK0   A0A2A4KAQ0   D6X0N9   A0A1Y1L5N9   A0A0T6AYU0   A0A067R665   A0A2J7R2W5   A0A1B6CVX2   A0A1B6K2J4   A0A1B6LYA0   U4TXE1   A0A1B6FQ71   T1HLX7   A0A224XVX5   R4FM06   A0A0K8S9F7   A0A0A9YDZ1   A0A0V0GA35   E9H2J4   A0A0P4VSI2   A0A0N7ZQH6   A0A151I9K4   A0A0P6B2K0   A0A158NNK7   C4WT17   J9K3K9   E2BLB7   A0A2S2N8B3   E2AJA0   F4WQJ9   A0A195F6Q2   A0A195DKU1   A0A0P5ZB80   A0A195B377   A0A154NYS0   A0A3L8E0P9   A0A0P5DD00   A0A310SES5   A0A0L7R857   A0A2A3E594   A0A088A5C1   A0A026WKX9   A0A0P4XSL5   E0W0B7   A0A151X955   A0A182IKI4   U5ER10   A0A1D2ND48   K7IY34   B4NIE2   A0A1A9XG36   A0A1B0BEF4   A0A0L0CH61   A0A226DM14   A0A1A9WY22   A0A1S3D6R8   A0A0P5CXV7   A0A1L8D9Y8   A0A1A9Z9J2   A0A0K8TNR9   B4K6W4   B3LY06   A0A182YQX2   A0A1A9UJS4   A0A1I8N2H4   A0A0N8BCI1   A0A182SRC3   A0A182NN04   W5JE58   A0A1I8PUX5   A0A182VPM7   A0A182REE6   A0A1Q3EYQ5   A0A182Q8X4   A0A182TFM3   B0WVM7   A0A182VJ21   A0A182LNL2   A0A182X476   Q7Q7M4   A0A182IDD4   A0A232ETT2   A0A0A1WEE6   A0A1W4VLM3   B4JGF2   A0A0M8ZNZ8   B4MC21   A0A182PV96   A0A3B0K1V3   A0A2R7VY78   A0A023EK95   A0A034VMP1   A0A0K8V884  

KEGG

101740081    no KO assigned | (RefSeq) uncharacterized LOC101740081

GO

GO:0016021   GO:0046982   GO:0005634   GO:0000786   GO:0003677   GO:0005840  

PANTHER

PTHR31548  

Subcellular location

Chromosome  
Nucleus  

Length:

221

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

89.70605

Exp number, first 60 AAs:

22.67878

Total prob of N-in:

0.96719

POSSIBLE N-term signal

sequence

inside

1  -  11

TMhelix

12  -  34

outside

35  -  89

TMhelix

90  -  112

inside

113  -  123

TMhelix

124  -  146

outside

147  -  173

TMhelix

174  -  196

inside

197  -  221

 

 

Pi

227.026848

Theta

172.970775

Tajima's D

1.314433

CLR

0.378116

CSRT

0.740712964351782

Interpretation

Uncertain