Silkworm Genome Informatics Database

Gene

KWMTBOMO15747

Pre Gene Modal

BGIBMGA002251

Annotation

PREDICTED:_huntingtin_[Bombyx_mori]

Location

Bomo_Chr26(-):8802594-8827558 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.698

CDS

ATGAACGTCTTAGAGAAAGCTGAAAAAGCTTTAGAATATCTTAAAGCAAACGAAGGTTCTGCGAAAGTTCATGAGCTCCAAACGGCTGCTGGAACTCTGGGCAGATGCCTGGGAGCTTTAGGAACTCGCTCGAATTGCGCTCGGCATTATGCAAATTTGTTACACTCAGCAATTCCAACTTTATTGTTTTTAGCCAGCCATGACAGCGCTGAGGTGCGTTTGGTTGGCGATGAAGCTCTCAATAGAGCCGTAGTCGGAGGTTTCGCATTCCATTCACACAAAACTAATATTATACTTCAAAATCAGATTGATCACAAAAGGAATGCCAGATGGATCCGTGCAGCTTTATCTCGTATTTGCCTTGGAGAATGTTGGCTCCGTCCTGGTGTTGGCAAGATTCGAAATCAAGCCCAGTTCCTATTTCCAAAATTAAGTCAGATAGTGAAAGAGACAAATGAAATTCAACTCATTGTGGAAGCATTAGAGAGTAACCTGCCTCGGCTCCTAAATGCCTTGGGTGAATATACTTCAGATGAAGAGATTTCAGAACTGTCAAAAGCAATTCTATTGCACGTAGAAACGACTGAAGCATCTGTGAGGAGAGGCATAGCGACATGCATAGCGCACATGTGCTCACACAGAGAAGCCTTGCTTACTAATGTCCTACAGAAAGTGTTTGAAAAACTGTGGCCCATCTCTCGCGAGAGTCCAGTGGTTTTGGGCTGGTTTAGCGTCATCAAAGTCGTTTTTCAGATAAACGAATTCAAGAAATTTGCCGAAAGCGATCTTTTCAACGTGCATGATTACATGGAGCTGTACAATCTATGCGTGAACTACGTAGATCAGTCGACGGACCACAACATCCAGAACTGCGTGATGGAATGCCTTACCGTAATACTGTCCAAAGCGGCCGGAGCGTACAGGGCGGCCGTGCTGGAGAAACACCCGGCTCGGGTTGTATTGGAGGAGAGGAATTTAAATAAAGGACACAGGAGGAATATTAGTTCGTCGAGTGTCATATCCTCAAGGTACGCGCCGAGTCCGGCCTCCGAGCAGAGAGATAATCTAGAGCTTTCGTTTACTGGAGCTTTGCAACTTGGAAGTCTATTGCAGTTGAACACGCCGAGCTTGAGCGTCGAAGATCTGACCATACAGACTCCGGAGTCGCCGGCGAGCGAGGGGGAGGCACCGCCGCCCGACTCGGAGCTCCTCTCCAGAGACTTGTCGGAGAAACTTAAGGAGTTCGAAGAAACCGACAGCACCGATACTGACCTGGAGAAATGTTCCCACGACGCCGGGTTCAAGATAAACATAGGATCTGTAGCCGATGATGATGTCCCGCTAAAGTATTGTGTGAGGTTGCTGGCTTCGAAGTTTTTGTTGGCTGGCAACAAAGGAGACCTCATTCCTGATCGGTCTGTGCGGGTCTCGTTGAAGGCGTCCGCGCTTAACTGCATATCGGAAGTAGTGCAGGTGTACCCTCAAGCGATGACCTTGTATTTGGACAAAGATGCTGACGCGAAAATCCATAATATTTCCGGGTCATCAGAGGGCACAGACTCGAACCAAGATAACATTAATGAGTACATATTAGAGAGAAACGTCTGTTACCAGGATTCCCTAACAGATTCCTTAAGCCAAGAGCTGAATAGGAGCATCGAAGGTCACTCGATTTGCAAAAAAGACATAAAGTCCCTCGAAAAAAGCACAGATAGCGGCGAGAAAAGCTCCAAGGACGCACCCAGCATCGACAGTAAGCACAAAACGGACTTAATGGGAAGCGCCATGACCGATAGCACGAATCCCAACATGACCATTAGTAACTTCACCACAAACTCCAACATGACCACGAGTAACGACCAGACCAGCGGATACCCCATGTCCAGCAGTGGGGACGTACTGTCCTCGAGCATCGATTTGGACATGAAATTCGATCATTTCGGAGAATCGACAACCAATCTGGACAATCTCAAGGATTTGGAACGCAAAACTGACAGGACGAAAAGAGCCTTGAAAAGGACCGATGAAGTACAAAGCGCTGATGTGGAGGGCTTGGTCGACAGCAAAGACGAGAAAGACTTTGAGTTTCAGCATCTATCCGATGTTTTTCTGCTGCTGGAAGGTCACTGCGACCCGCAGATCAGGGGTCTGGTCAGGGTCTGCATTGGGAACTACTTGGCGGCCGCTCTGAATGCCTCCCACGGCGATTATAATAGATGGAGAAACTTTAACTCGTTGCCTAAAGCCGTCGGAGACTGCATGAGCGCTGGGGACCTGGTACAGATCATATTGAAGGGTCTAAGGGATGAAATACATTCAACAGTGAACCACAGCTTGTCAGCACTGACCGGCCTGGCCGTGGCCCTGTCGGCCAGCTCAGACTGGTCCCTGCTCGTGGATGCGTTGACCTCGTTAGTGCACGTGGAGGCCAACACGTATTGGCTGTGCAGGGTCAATCTCTGTAAGCTCTACGAAAGGATACCGTATAAGAGATTATTCACACTGTATCCGGGGTATCGCGCTAGAAGTCGAATGATAATGAACACGTTGATTGGTCTGCTCCGCGACCCGGATCAGAAGGTCAGGAGTGCCGCAGCGCACGCCATAGCGAACGTTATACCAACGATATACCCGCGAAGGAGACACACGCCGGCCACAATGGTAACTGAGTTAGCTAAGGAGTTAACGGACGAGGTGTCTTTGGATAGAGCGACGCTGTCGTTGCAAATAGTACGCGACATATACTTCTATCACGACCTCCCTCGGCAATTGACCGAAGGGAACAGAACGGACGGCGACACCCTCAAGATTGTTGTCGGAGACTTAATGGGTAGACTGATGGCCAGCAGCTGTAAACATTATTCGCAAGGCTTACTGGAGGCGCTACAAGCGATACTAATCAAGTGGACTCCTTGGAAACACATAGACGCCTACTCCGGTCAAGGGATCCTGGGCTATTGTCTAGATAACCTGGACTATTGCAACACGAACGTTTCTATGAGGACCCTTCTTCTGGACCTGTGCCGTTTGATTTATCCAGTTGAAGTGCACAACATAATGCGCAAAAGGACTGCTAGTAGAGATATATTTGAACGCGATTCGACTAGTAAAGGGAAGTGGCAACACCTCGACGGCGACAGGGTTGCCAGCTTAGCAGAGAAATTTCTCCAAGTAACATTGAAAATGCTGAATGTATTGGTTCATCTGATTGAGGAAGTTAATCCCAATGTACATTTGAATAAGGGCGGGATTGCCCTTCCCGGGAGTCCGGTTCGAAGGAAAACTCAAGATTCTATTCAAACTCGGAAGAATTCGACGGCGAGTGAAAGCTTAGATGACAAAGCCTCTCTAAAACGAAAGCCTTTAATGCCGGCAACGAGCTTGAGAGCGAACTTTGTGGGACACTTTTATAACGAACCGTTCTATATGAAATTGTACGAGGGCTTAAGAGCAGCTTATTCGAATCATAAGATAAATCTCGACCCTAAATCGAGCATATTCCACACGTTTCTATCGACCACTCTGGACTGCCTCGCCGTGCAACTGGAACTGTCCACCGAGAAGGAGTTCGGCTCCGTCACAGAAGAGATCCTGTACTACCTCAAGGCAATAATGCCCTTATGCGCCGACAATACGGTCTATTGTGTGACGCAGCTGTTGAAATGTTTATTCGGGACGAACATGGTGGCGCAGTACGACGATTACATGAGCATCAGCGACAAGAATGAGGGCAGCCGGCAGACCAGCTTCTGTGAGGACGTGTGGACTCGCGCAGACCACGGCTCCAGGAGGAGCAGCGTCGGCTCGAATGCGAGTCAGAAGCTGTGTCTGGACATCAAGAACCCCAGGATGGCGGCGGAGAGGCAACTGCTGATCGCGCTGGAGAATTTCGCCAAGAACAAATCTGATAGGAAGTGGAGTACCAATAAGGAGGAGCTGGAGAAATATATTAAGTTATTTGAACCGGTTGTCATACAGTCTTTGAAGAGCTACACAATGCAAAACGACATTCCACTCCAGCGCCAAGTGCTAAGTCTGCTGAACCAACTGTTGACCCTGAGGGTGAACTACTGCATGCTGGACAACGATCTGATCTTCATAGGCTTCCTGATGAAACAACTAGATTTATTCGAACAACATGAAATACCGAATTGTTGCGATTTGGTGAACAGCATCCTCATGTTTTTGGTGCAACTGTCGTCTTCCAAGCATCACACGAAGAAGATCATTGAAATACCGAAATTAATCCAGTTGTGCGATGGTCTGATGGCGTCGGGGGCCCACGCGGAGTGCATCGCCGGTCTAGAACCCGTCGCTGTCAAAGTCTTCAGCAGTATGGGAGGTAACGTGTTAGGCCGAGCTCAACAGCAAGAGGCGCAGGCGACCAGAGAAGTGCTCTTCTATATGCTGCAGAAGACCATGCATCAACAGAAGGTGCTAGAGCTAGTGTCGTGTATACTGTCTCTGACGCAAGAACACCCGGAGAGCTACTATCGATACTCGGAGCTGGCCACCGACACGTTGCTCAACTTGTTGTCTCAGAGGTCTGTAGAGCTGGACTCATGTCTAGCAGTGTCGGCGCTAGAGCGATTGCTAGAGACGGTGTATAAGGACGTTCTGCTAGAGCAGAGCCGGGTCGAGGTGCTACTGAAGATTCTGTTTAAAGCACCACCAGATCAGTCCACAACGCCACCGAAGCTGAAACTCCGCTATCTATCAATAATAATGGTGCTACTAAGGAAGGTCCTGGTACTGATACCGGAGAGCGAGATATTATTATCGATCAACTACTTGAAGTCGACCTGCGTGTCGCCGCAGTCGATCTTCTTCAACGCGAAAGCGGACGTGGACCCGCTCAACGTGCTCAACGTGAACGAGAACTGCGCGAATCTGTCCCCTGACGTGGTGCTCGTAAGGTTCCTTTTCAAAACGCTGACTTACGCCGTTACGGAAGTGGAGAAGAATTACGAGCCGAATCCGAAGTACGATACCGACGAGAACAGGTTGCTGTATTCCGTGTGCGTCAACATCGTCGTGCAGGTCAAGCAGATGTTGCATTTGACTACTGGCTGCCTGTTCCCTCTGATATCGAAGACGGCGCAGAGTCTCCTGCACAACGAGCAGAGCGGCCTCAACACGGGCCTGTACAGTCCGGACGAGAACATTCCACTCGACACACTCAACATGATATGCCTACGAGCTGCCCACGCGCTGCCCCTGCTCACCGCGCACTGGTCCCATTTGCTCATCAGGTCAGTGATTAAAAAGGATTGCTCAAAATAA

Protein

MNVLEKAEKALEYLKANEGSAKVHELQTAAGTLGRCLGALGTRSNCARHYANLLHSAIPTLLFLASHDSAEVRLVGDEALNRAVVGGFAFHSHKTNIILQNQIDHKRNARWIRAALSRICLGECWLRPGVGKIRNQAQFLFPKLSQIVKETNEIQLIVEALESNLPRLLNALGEYTSDEEISELSKAILLHVETTEASVRRGIATCIAHMCSHREALLTNVLQKVFEKLWPISRESPVVLGWFSVIKVVFQINEFKKFAESDLFNVHDYMELYNLCVNYVDQSTDHNIQNCVMECLTVILSKAAGAYRAAVLEKHPARVVLEERNLNKGHRRNISSSSVISSRYAPSPASEQRDNLELSFTGALQLGSLLQLNTPSLSVEDLTIQTPESPASEGEAPPPDSELLSRDLSEKLKEFEETDSTDTDLEKCSHDAGFKINIGSVADDDVPLKYCVRLLASKFLLAGNKGDLIPDRSVRVSLKASALNCISEVVQVYPQAMTLYLDKDADAKIHNISGSSEGTDSNQDNINEYILERNVCYQDSLTDSLSQELNRSIEGHSICKKDIKSLEKSTDSGEKSSKDAPSIDSKHKTDLMGSAMTDSTNPNMTISNFTTNSNMTTSNDQTSGYPMSSSGDVLSSSIDLDMKFDHFGESTTNLDNLKDLERKTDRTKRALKRTDEVQSADVEGLVDSKDEKDFEFQHLSDVFLLLEGHCDPQIRGLVRVCIGNYLAAALNASHGDYNRWRNFNSLPKAVGDCMSAGDLVQIILKGLRDEIHSTVNHSLSALTGLAVALSASSDWSLLVDALTSLVHVEANTYWLCRVNLCKLYERIPYKRLFTLYPGYRARSRMIMNTLIGLLRDPDQKVRSAAAHAIANVIPTIYPRRRHTPATMVTELAKELTDEVSLDRATLSLQIVRDIYFYHDLPRQLTEGNRTDGDTLKIVVGDLMGRLMASSCKHYSQGLLEALQAILIKWTPWKHIDAYSGQGILGYCLDNLDYCNTNVSMRTLLLDLCRLIYPVEVHNIMRKRTASRDIFERDSTSKGKWQHLDGDRVASLAEKFLQVTLKMLNVLVHLIEEVNPNVHLNKGGIALPGSPVRRKTQDSIQTRKNSTASESLDDKASLKRKPLMPATSLRANFVGHFYNEPFYMKLYEGLRAAYSNHKINLDPKSSIFHTFLSTTLDCLAVQLELSTEKEFGSVTEEILYYLKAIMPLCADNTVYCVTQLLKCLFGTNMVAQYDDYMSISDKNEGSRQTSFCEDVWTRADHGSRRSSVGSNASQKLCLDIKNPRMAAERQLLIALENFAKNKSDRKWSTNKEELEKYIKLFEPVVIQSLKSYTMQNDIPLQRQVLSLLNQLLTLRVNYCMLDNDLIFIGFLMKQLDLFEQHEIPNCCDLVNSILMFLVQLSSSKHHTKKIIEIPKLIQLCDGLMASGAHAECIAGLEPVAVKVFSSMGGNVLGRAQQQEAQATREVLFYMLQKTMHQQKVLELVSCILSLTQEHPESYYRYSELATDTLLNLLSQRSVELDSCLAVSALERLLETVYKDVLLEQSRVEVLLKILFKAPPDQSTTPPKLKLRYLSIIMVLLRKVLVLIPESEILLSINYLKSTCVSPQSIFFNAKADVDPLNVLNVNENCANLSPDVVLVRFLFKTLTYAVTEVEKNYEPNPKYDTDENRLLYSVCVNIVVQVKQMLHLTTGCLFPLISKTAQSLLHNEQSGLNTGLYSPDENIPLDTLNMICLRAAHALPLLTAHWSHLLIRSVIKKDCSK

Uniprot

A0A2A4JA52 A0A2W1BKA8 A0A3S2P5B6 A0A212EL19 A0A194QHZ9 A0A2A4IW16 + More

Pubmed

28756777 22118469 26354079

EMBL

NWSH01002313 PCG68548.1 KZ150122 PZC73160.1 RSAL01000019 RVE52786.1 + More
AGBW02014148 OWR42184.1 KQ458761 KPJ05183.1 NWSH01006658 PCG63313.1

Proteomes

UP000218220 UP000283053 UP000007151 UP000053268

Pfam

PF12372 DUF3652 + More
PF02985 HEAT

Interpro

IPR011989   ARM-like        + More
IPR024613   Huntingtin_middle-repeat
IPR016024   ARM-type_fold
IPR021133   HEAT_type_2
IPR028426   Huntingtin_fam
IPR000091   Huntingtin
IPR000357   HEAT

SUPFAM

SSF48371 SSF48371

Gene 3D

1.25.10.10

ProteinModelPortal

A0A2A4JA52 A0A2W1BKA8 A0A3S2P5B6 A0A212EL19 A0A194QHZ9 A0A2A4IW16 + More

PDB

6EZ8 E-value=2.35497e-72, Score=698

KEGG

101746788 K04533 huntingtin | (RefSeq) huntingtin

GO

GO:0005634 GO:0005737 GO:0005488 GO:0005515 GO:0005215 GO:0006270 GO:0042555 GO:0003707 GO:0006281 GO:0006259

PANTHER

PTHR10170

Length:

1760

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.33364

Exp number, first 60 AAs:

0.04182

Total prob of N-in:

0.00436

outside

1 - 1760

Pi

235.476857

Theta

171.707453

Tajima's D

0.886433

CLR

0.275685

CSRT

0.632868356582171

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics