SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15743
Pre Gene Modal
BGIBMGA009444
Annotation
PREDICTED:_uncharacterized_protein_LOC105842932_[Bombyx_mori]
Full name
ATP-dependent DNA helicase      
Location in the cell
Nuclear   Reliability : 1.163 PlasmaMembrane   Reliability : 1.069
 

Sequence

CDS
ATGACAACCAGCAAAATCCAAGGACAAATATATCATTTGCATGGTTCAATGGTGCCAACACCAAATGAACCGCATCAATTTCTGCAAATATATTTCATTTCGTCGATGGTGGATCAGCTGAATGTGCGGTGCAATATACAGGGAACACAACAGTTAAAGAGACGAATTATTGAACAGTTGCAAGCATTTTTTCACGCTAATAATGCTGTGGTTAATATGTTCAAAACAGCATTGGAACGAATGCCATCGGATACGCACAAATTTGTCATAAGAGCGGATTGTACCCCAACAGGGGAACATGTGCGAAGATTCAATGCACCCACCGTTAATGATGTTGCTGCTATTATTGTTGGCGATCCAACTAAATCGCGAGACATTGTCGTTCAGCGAAGAAGCAATATCATGCATCGTGTAAACGAGACACATCGTTTGTACGATGCGTTACAATATCCAATCATTTATTGGCAAGGACAAGACGGATACGACATCACGTTGAAGATGGTCGATCCAATTACAGGCGTATCAACGAATAAAAATCTAAGCGCAATGAATTACTATGCGTATCGTATGATGATTCGTACACATGAGGAGAATGTCATTCTGAAGTGCCGTCGGCTATTCCAGCAATTCGCTGTCGACATGTATGTCAAAGTCGAGACCGAACGTTTAGCGTTCATCCGATTCAATCAGGCAAAGCTACGATCTGAGGACTATATACACTTGCGTGATGCTATTCATTCAGATGTTGTACATTTAGCAGTGCATTTGGAAAATGGCCAAAGAGTTTACTTCACTGAGGCTAATGCGGCACAACGAGCTGAAAGACCACCATCGACAACATTGACTAGCTTCTTTGCAATGTGTGAAGCAGATCCATTCGCAGCGACGCTGATGTACGTTGAAATGCCCAAGTATTACACTTGGAATCAATCAACAAAGAAATTCCAACGTCGCAAACAAGGAACCCCAGTTCCAGATTGGCCACAGGTGTTTTCCACTGATGCACTAGGTCGCATGTATACTGTTCATCCTAGAAATGACGAATGTTTTTATTTGCGACTGCTGCTGGTAAATGTACGTGGACCAAAATCATTTGCGCATTTGAAAACTGTGAATGGCCACCAATGCCAAACATATCGAGAAGCATGTCAACTATTGGGTTTGCTGGAGAACGATTCTCATTGGGATTTAACACTTGCGGATTCAGTTGTTTCATCAAATGCGTACCAAATACGAACGCTGTTCGCAATTATCATCACCACATGTTTTCCTTCACAACCAATTCAGTTATGGAACAAATTCAAAGACGACATATGTGAAGATATCTTGCATCGCTTGCGCATTCAAACGAATAATCCTGACATCCAAATAACCGATGAAATCTACAATGAAGGATTGATTCTGATTGAGGATCAATGCTTGACTATTGCAAACAAGTTACTGATTGAAGTAGGAATGATTGCGCCAAATCGATCGATGCACGATGCATTCAACCAAGAATTAAATCGAGAGCTGCAATACAATGTTGATACATTGCAGGAATTCGTTCGAAATAATGTGCCGTTACTGAATGAACAGCAAAAACAAGTATACGAAACATTAATGCAAGCGGTGGACAATAATACTGGTGGTCTATTCTTCCTGGACGCACCTGGAGGAACAGGGAAAACATTTGTCATTTCATTGATTTTGGCCACTATTCGATCAAGATGTGACATAGCTTTGGCGTTAGCATCATCTGGAATTGCGGCGACTCTTCTAGACGGCGGTCAGCACTTCAATGAAACGGATAATTTGCGGACACGTATAACGCTTCGATTCAGTATTTACTTTGGATTCACTTTCATTTACTTAGAGAAGTTCAACTAA
Protein
MTTSKIQGQIYHLHGSMVPTPNEPHQFLQIYFISSMVDQLNVRCNIQGTQQLKRRIIEQLQAFFHANNAVVNMFKTALERMPSDTHKFVIRADCTPTGEHVRRFNAPTVNDVAAIIVGDPTKSRDIVVQRRSNIMHRVNETHRLYDALQYPIIYWQGQDGYDITLKMVDPITGVSTNKNLSAMNYYAYRMMIRTHEENVILKCRRLFQQFAVDMYVKVETERLAFIRFNQAKLRSEDYIHLRDAIHSDVVHLAVHLENGQRVYFTEANAAQRAERPPSTTLTSFFAMCEADPFAATLMYVEMPKYYTWNQSTKKFQRRKQGTPVPDWPQVFSTDALGRMYTVHPRNDECFYLRLLLVNVRGPKSFAHLKTVNGHQCQTYREACQLLGLLENDSHWDLTLADSVVSSNAYQIRTLFAIIITTCFPSQPIQLWNKFKDDICEDILHRLRIQTNNPDIQITDEIYNEGLILIEDQCLTIANKLLIEVGMIAPNRSMHDAFNQELNRELQYNVDTLQEFVRNNVPLLNEQQKQVYETLMQAVDNNTGGLFFLDAPGGTGKTFVISLILATIRSRCDIALALASSGIAATLLDGGQHFNETDNLRTRITLRFSIYFGFTFIYLEKFN

Summary

Catalytic Activity
ATP + H2O = ADP + H(+) + phosphate
Cofactor
Mg(2+)
Similarity
Belongs to the helicase family.
EC Number
3.6.4.12
Pfam
PF14214   Helitron_like_N        + More
PF05970   PIF1
Interpro
IPR010285   DNA_helicase_pif1-like        + More
IPR025476   Helitron_helicase-like       
IPR027417   P-loop_NTPase       
SUPFAM
SSF52540   SSF52540       

Ontologies

Topology

Length:
622
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
2.32881
Exp number, first 60 AAs:
0.00138
Total prob of N-in:
0.00462
outside
1  -  622
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
29.519549
CSRT
0
Interpretation
Uncertain
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