SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15741
Pre Gene Modal
BGIBMGA002326
Annotation
PREDICTED:_octopamine_receptor_beta-3R-like_[Amyelois_transitella]
Location in the cell
PlasmaMembrane   Reliability : 4.828
 

Sequence

CDS
ATGGGAGATATAGATGGTGTATTCCGGAGCGAGGTAGAAGCGCGAGGGCGCGGTACGGAGTCAGCGTTTCTCGACGGGCTGCATTCAACGCTGGCGCCTTCTGCCGCGCCCGACCACGACTGGCAGCATACTTTCATCCTCATCATCAAAGGCCTCATCTTCTCCACAATAATCCTCGGCGCTTTATTTGGCAACGCTCTCGTTATCATATCAGTACATCGACACAGGAAGCTCAGAGTTCTCACTAACTACTACGTTGTTAGTCTTGCTGTGGCTGATATGTTAGTCGCCTTATGCGCAATGACCTTTAACGCCAGCTCCGAATTAACAGACGCCTGGTTGTTTGGTCCGTTAGCCTGTGATATCTTTAATTCTCTTGACGTTTACTTCTCCAGTGCTTCTATACTTCATCTGTGCTGCATATCTGTTGATAGATATTACGCTATAGTGCGGCCCCTCGAGTACCCGGTTACCATGACTCATAGGACTGTTTGCTTCATGCTCGCAAACGTTTGGCTGTGGCCCGCGTTCATTAGTTTCGTGCCCATATTCAAGGGTTGGTATACGACTGAACAACACCGCCAATATAGGAAGGACCATCCTGATGTGTGCATTTTCAAAGTCAATATGGTATATGCTATAGTATCTTCGAGCGTTTCATTCTGGATTCCGAGTTTGGTCATGATTTCGATGTACTGCCGAATATTCCGGGAAGCGATCAGACAAAGAGAAGCCTTAACGAGAACTTCGTCAAATATTCTATTGAACTCTGTACATATAAAGCACACGTCACATGCTGCTCATCATTCCCATTATCTGCACCCTGATAGAAGACCTTCAGATATAAGCCCAAACTACAGCACATTCACTGAAGTGGGTCCTGAAGAAACTGAGTTTGGCGAAGTTGTTATGTCTTTGGGAGATATCTGTCCTAGTAAAGAGGCCAGCCCGAGAAAATCTGTGAACGTTAGCTGTGATACTGCTAGTTCGGGGTACTGTTCCGGAGGATCGAACAAGAGATCTTCAAGTGGTCAACCACCTTATGGATGGAGACCAAGTTGTTCTTCCGCGATTGCTACAAGAGATCTTGCAAAAGCTGCCACAGAGCTGAATGCGCAAGGGGCAACGCTTCGTGCCGCTGGGAAGTCGTGGCGTGCTGAGCACAAAGCAGCCCGTACACTTGGCATCATTGTAGGAGCATTCCTGCTGTGCTGGCTACCATTTTTTCTTTGGTACGTTACGACGAACGTGTGCGGGGAGCCTTGCGAGACGCCTTCGGTTGTGGTCGGTGTGCTTTTCTGGATCGGCTATTTCAATTCGGCCTTGAATCCACTGATTTACGCGTATTTCAATCGAGATTTCCGGGACGCGTTTAAGAACACGCTGATGTGCGCCCTGCCCTGTTTGTTCGGTTGTTGGAAGGACACGGGTACGGCCCAATTTGTGTAG
Protein
MGDIDGVFRSEVEARGRGTESAFLDGLHSTLAPSAAPDHDWQHTFILIIKGLIFSTIILGALFGNALVIISVHRHRKLRVLTNYYVVSLAVADMLVALCAMTFNASSELTDAWLFGPLACDIFNSLDVYFSSASILHLCCISVDRYYAIVRPLEYPVTMTHRTVCFMLANVWLWPAFISFVPIFKGWYTTEQHRQYRKDHPDVCIFKVNMVYAIVSSSVSFWIPSLVMISMYCRIFREAIRQREALTRTSSNILLNSVHIKHTSHAAHHSHYLHPDRRPSDISPNYSTFTEVGPEETEFGEVVMSLGDICPSKEASPRKSVNVSCDTASSGYCSGGSNKRSSSGQPPYGWRPSCSSAIATRDLAKAATELNAQGATLRAAGKSWRAEHKAARTLGIIVGAFLLCWLPFFLWYVTTNVCGEPCETPSVVVGVLFWIGYFNSALNPLIYAYFNRDFRDAFKNTLMCALPCLFGCWKDTGTAQFV

Summary

Similarity
Belongs to the G-protein coupled receptor 1 family.
EMBL
RSAL01000019    RVE52789.1    KQ460794    KPJ12181.1    BABH01020780    BABH01020781    + More
KQ458761    KPJ05180.1    AGBW02009547    OWR50545.1    ODYU01011181    SOQ56762.1    JTDY01000237    KOB78121.1    KJ152560    AHN85843.1    NEVH01020342    PNF21441.1    PYGN01000178    PSN51955.1    KQ976440    KYM86546.1    KQ982480    KYQ56017.1    KK852660    KDR19123.1    GU237483    ADD91575.1    LRGB01001361    KZS12256.1    GDIQ01236042    JAK15683.1    GDIP01161383    JAJ62019.1    GDIP01198475    JAJ24927.1    GDIP01073239    JAM30476.1    GDIP01152091    JAJ71311.1    DS235830    EEB17996.1    KQ434829    KZC07669.1    GDIP01087549    JAM16166.1    GDIP01185077    JAJ38325.1    GDIP01016528    JAM87187.1    KU710371    AOG14367.1    GDIP01156094    JAJ67308.1    KI207726    KI208934    KI210288    ERL95728.1    ERL95954.1    ERL96228.1    APGK01000149    KB741407    ENN70180.1    AJWK01035015    AJWK01035016    AJWK01035017    AJWK01035018    AJWK01035019    KQ971372    EFA10770.2    KYM86550.1    GDIP01153092    JAJ70310.1    GDIQ01005074    JAN89663.1    KDR19125.1    KQ977580    KYN01722.1    KU710372    AOG14368.1    GU074419    ADI56272.1    QCYY01002935    ROT66429.1    KX578903    ASM90736.1    KQ460620    KPJ13529.1   
Pfam
PF00001   7tm_1
Interpro
IPR017452   GPCR_Rhodpsn_7TM        + More
IPR000276   GPCR_Rhodpsn       
IPR002233   ADR_fam       
IPR002002   Octopmn_rcpt       
PDB
2R4R     E-value=2.41016e-39,     Score=408

Ontologies

Topology

Subcellular location
Cell membrane  
Length:
482
Number of predicted TMHs:
7
Exp number of AAs in TMHs:
155.48441
Exp number, first 60 AAs:
14.1593
Total prob of N-in:
0.00340
POSSIBLE N-term signal
sequence
outside
1  -  44
TMhelix
45  -  67
inside
68  -  79
TMhelix
80  -  102
outside
103  -  121
TMhelix
122  -  141
inside
142  -  167
TMhelix
168  -  190
outside
191  -  209
TMhelix
210  -  232
inside
233  -  393
TMhelix
394  -  413
outside
414  -  427
TMhelix
428  -  450
inside
451  -  482
 
 

Population Genetic Test Statistics

Pi
225.714265
Theta
169.026301
Tajima's D
1.163272
CLR
0.24445
CSRT
0.709514524273786
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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