SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15723
Pre Gene Modal
BGIBMGA010798
Annotation
PREDICTED:_putative_nuclease_HARBI1_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.363
 

Sequence

CDS
ATGGCCGGAACTTTAATGTCTAGTGATAGTGACAGTGATCTTGAAGTGCTGGAGCAGCTTTCAGATTGGGATAATGAGGATACTGATGGAGACGAAGGTCCATCAGGATCACGAAGAAGCTATTGCCGTATTGATTATACTCAGTGCCTAACTGATGCTGAATTTACATTTAGATTTCGTCTTAACAAAGCTGCGGTACAATTACTTTTATCGGAAATAATGCCACATGTAAAAGTAACCTGCAATCGAAATCATGGAGTTGCACCACTTCACCAGCTACTCCTAACCCTCCGATTTTATGCATTGGGTACAATGCTAATTTCTGTAGCGGATTTCGTGGGCGTGTCAAAATCGACCGCCAGCAGAATAGTTCACGATATATCTGGAGCTATAGCCATACTGTACAATAAATACATTGTAATGCACCCTAATCATGTGGACAAGTTTTTTCAATATGGTCAATTCCCACGTGTCCTGGGTGCAATTGACTGCACTCACATACGGATACAATCTCCAAATCACACAATAGGCGAAGAGTTCAGAAACCGAAAAGGCTACTTTTCATTAAATGTTCAAGCAGTTTGTGATGCTGATTTGAAGTTTATGAATGTTGTAGCCCGGTGGCCTGGTTCTGCACATGATGCTACTATATTTAATAATTCTGTTTTAAGAGAAAACATTCAGAAAGTTGTAATAGCTACAGCAGTTCTACACAACATCTGTAGAATTCATAACTTGCAAGAAACCCCAGCAGAGGTACAAATACCATTCCAAGCAATGGATGATGATGATCTTCAAACTATGGGAGTACAAGATAGCAGGGATAGAACAGAATTAATAGAAGCCTACTTCTCAACTCTGTAG
Protein
MAGTLMSSDSDSDLEVLEQLSDWDNEDTDGDEGPSGSRRSYCRIDYTQCLTDAEFTFRFRLNKAAVQLLLSEIMPHVKVTCNRNHGVAPLHQLLLTLRFYALGTMLISVADFVGVSKSTASRIVHDISGAIAILYNKYIVMHPNHVDKFFQYGQFPRVLGAIDCTHIRIQSPNHTIGEEFRNRKGYFSLNVQAVCDADLKFMNVVARWPGSAHDATIFNNSVLRENIQKVVIATAVLHNICRIHNLQETPAEVQIPFQAMDDDDLQTMGVQDSRDRTELIEAYFSTL

Summary

Pfam
PF13359   DDE_Tnp_4
Interpro
IPR027806   HARBI1_dom        + More
IPR026103   HARBI1_animal       

Ontologies

Topology

Length:
287
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
3.21830000000001
Exp number, first 60 AAs:
0.00019
Total prob of N-in:
0.04783
outside
1  -  287
 
 

Population Genetic Test Statistics

Pi
259.919328
Theta
192.580232
Tajima's D
1.10047
CLR
28.436197
CSRT
0.689065546722664
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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