SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15721  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA002314
Annotation
PREDICTED:_uncharacterized_protein_LOC106110629_[Papilio_polytes]
Location in the cell
Extracellular   Reliability : 1.119 Nuclear   Reliability : 1.781
 

Sequence

CDS
ATGAGTCAATATTCCGGAGGGCCTCCGCCTTACTACCCACCCCCGCCTGCCCCTCACTGGCCTCACCCCCCTCCACACCCAGGGGCGCATCCTCCTCCACCGGGACCTTACGTTCCTCCTAATCCACACCACCCGTACCCTTACTACGTTCCCGGGACTGTTATGGTCCCAGTACCAGTGCCGATGCCACCAATGTCTGGAGCCCCGGATCAAGGTCAGCCAACGTACATAACCAATTACATTTACCACGGAGAATCTTCTAATGTGGATCAAGTTAGCGTAGTCGACCATCCTGGAGAGTACGATTGGGTCGCGACCACCGCCACTACCGCGTCCTCGCTCACTGGTCGCGCCGTTGTTGGTGGACATGAAGGCTGGGACGGAAGTCCCTTATGGGTCATCAGAGCTTGGCACATGGGGGACATGATACCTGGAAAACTGTCCGTGAGGCACAACGCGGCCTCAATTATGTACAACGGTAAAGAGATTCCCGTTCAAAATATTGAGGTTCTGTGCGCCAGACCGGAGGACCTGCGGTGGGTGTCAGCGTCTAACGGCAGCGTACCTCCTGGAGCAGTGCTCGGAGGAAGAACGGCGTCAGGAGAGACCTTGTATGTTGGCAGAGCAAGGTACCAGCTATCCGTGACCCCCGGTAAAGTGCACCCAAGTCACAAGACGTGTTACATCGGCTTTGGCGGCACAGAAGTTGCGCTGAAAATGTATGACGTTTTGTGCAGAGTCAGTTAA
Protein
MSQYSGGPPPYYPPPPAPHWPHPPPHPGAHPPPPGPYVPPNPHHPYPYYVPGTVMVPVPVPMPPMSGAPDQGQPTYITNYIYHGESSNVDQVSVVDHPGEYDWVATTATTASSLTGRAVVGGHEGWDGSPLWVIRAWHMGDMIPGKLSVRHNAASIMYNGKEIPVQNIEVLCARPEDLRWVSASNGSVPPGAVLGGRTASGETLYVGRARYQLSVTPGKVHPSHKTCYIGFGGTEVALKMYDVLCRVS

Summary

Pfam
PF11901   DUF3421
Interpro
IPR006616   DM9_repeat        + More
IPR024518   DUF3421       
PDB
5MH1     E-value=6.79269e-13,     Score=177

Ontologies

Topology

Length:
248
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01138
Exp number, first 60 AAs:
0.00672
Total prob of N-in:
0.00968
outside
1  -  248
 
 

Population Genetic Test Statistics

Pi
36.217811
Theta
28.970697
Tajima's D
0.722364
CLR
0.989915
CSRT
0.584970751462427
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
28556443 AVVGGHEGWDGSPLWVIR 100.00 2e-06
28556443 AVVGGHEGWDGSPLWVIR 100.00 2e-06
28556443 HNAASIMYNGK 100.00 2e-06
28556443 TPAHGGGPSGINTGLSWPSTGTFTR 100.00 2e-06
28556443 TCYIGFGGTEVALK 100.00 2e-05
28556443 TCYIGFGGTEVALK 100.00 2e-05
28556443 TCYIGFGGTEVALK 100.00 7e-04
28556443 TASGETLYVGR 100.00 7e-04
28556443 TASGETLYVGR 100.00 7e-04
28556443 EGWDGSPLWVIR 100.00 0.016
28556443 EGWDGSPLWVIR 100.00 0.016
28556443 WVPASNGQVPVGAIPAGNSHSGEPLYIAR 100.00 0.016
28556443 EGWDGSPLWVIR 100.00 0.016
28556443 AWHMGDMIPGK 100.00 0.016
28556443 AWHMGDMIPGK 100.00 0.016
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