Gene

KWMTBOMO15718

Pre Gene Modal

BGIBMGA002311

Annotation

PREDICTED:_uncharacterized_protein_LOC101739289_[Bombyx_mori]

Location

Bomo_Chr26(+):7235432-7263446      View in EpiBrowser

Full name

DNA-directed RNA polymerase subunit beta      

Location in the cell

Cytoplasmic   Reliability : 1.646 Nuclear   Reliability : 1.628

CDS

ATGTGTCTAAGTCATGTCATGCCAAAGTTATTTTGGATAGTTTTTATAAGTTATTTAGTTGAACCATGCAGTTCTTTTGTTCTTCGCGCCTACCTCTCCCAACACGGCCTTCATGGAGAGATAGAATTTTCCCACAAAAACGACACCTTAATCAGTATCCGCACAAACCTAAAACCAACATTACAATATCCTGACGGAGTTTGGAGATGGACTATTCACGAGTTTCCTGTCGATTATCGGGATATTTCTGAATCCCGGTGCTCAGAAGAAACTTTAGGGAGAGAAATCATAGATTTGACTGAAGAATTGGGGTATTTAATTATACCTGGGAAAGACCACGCCGAGTTCGAAAGCAAAAATACTTTGACCGGCCCTAATGGACTCTGGGGGAGAAGCATTGTTTTAGAAACAGCAGAGAGAGATCGAATAATCTGTGCATCAATTCTCTCAACTGAGAAGCTGTATGAAACTCATGCTCTAGCCAAATTCACTGCACCGGTGGCAGGTACATTACACTTTAGATGGATCTCCGCTAAAGAGATTGACGAATCCGATTCGTATATCCAAGCTGACTTGTATCATGCTAAAGCAGTTACAGATAAGTCAGAGTACACTGAGCATAAATGGAAGCTCTTTGTGACAGACATATTTGATTCTGATAAGGGAAATTACGAGGACAATTGTAATGTACTGCAAGCAGTCTTCGACCCGGAGAACAATGGAGAAGGCATGAGTGTAGGTGACTTAGATAGTAGATTGGGTCTTATTAAAGTGGCTACGGATGCTAAAGTAAAAAAAGTGAGGACTCTTTATAAAAATGATGTGATAGACATTTTGAAAAATGATATGGAGATGACACGACGAAGTTTGTATGTGGTGATTTTTGATAATAGACATGTCGATAGTTTCTTGGCTTGTGCTAAGTTGAGGCTGATTCCTCCAAAAAGCAGCAAGGTTTTGATCAACATGGACGGAATCCGCGGCACCGTTGATTTTACCCAGCGCTCCCCATTTGACCCGACCTGGGTTAACTTTCAACTTGGTGCTTCCGACATGGAGTATGAATCCAATCTTCGTTTTGTTGGCTCCATGCTTCAATACAACATCAGAGAGTTGCCTCCGAAACTATTGGATGCGAATCAAGTTAATTACATGTGCAATACGACGGGAGATATTTATAATCCCATGGAATTGGACTTGAAGACTTTACCTCCGCCAGGATTAAGTACGCAAGACCACTATCCCGTGGGAGATCTGCTGGGAAAATACAAAGATCGGACCGAATACTTGAACCACAAATATCTTCTGCCTGGTTTGGCTAATGAATTAAGTGGAGCGTATTGGGACGTGTACCTACCATTACAAGGAATTTATTCTGTGGTACACAGATCCCTCGTGTTGGAGAGGAGACCCGGAAAGCGTAATGTGTGTGGAACTATTCTACTTTACGAGGATGGTACAGAATACCAGATACAAATGAGTGGAGCTCAGGTCATCTTCCGGTATCCTATTGTGGGAAGAGTTATTTTCAGGCAGCCGTTGGACCAACCCTGGGAGGACACCACCATAATAATCGAGAGCATGGTACACGCGGATGGAGCCAATGTAAACAACACAAGAGAGCATCGTTGGGCCATCCACGAACACCCCCCGGGGGTTGATTATTACAACTGGACGGGACGATGCCTCAGCGCCGGAAAAGTATACGAGCCCCATAGTCTGGATATAGACACACGACACCCCGAACAGTACTGCAGGAGAGGATTGGAAGGGCTTTGTCGCATTGGAGACTTTACCACGAGGCACGGCATGCTCTCTATAGCTGGAAAGAAAGTGGATAGTGATCGACTAACAAGGAGGCTGTTTACTGACACAGTCATATCGCTGACAGGCAAGCATAGCATCATGAGGAAATCACTACTTATTTATGATGATCACGGACCCGTTGCTAGGGGTGAGAGAATGGCTTGTTCAATAGTGAATGGCCTTCATCGCCGTAAAGCGGTGGTCCGCGATTGGTTCGGAAACGGACAGCAGCTTCAGCTGAAAGGCAAGATTGAAATGACTCAACAATCAGAGTATGACGTCACTAATGTACAAGTCACGATCGAAGGGTTGCAGAATGTAAATGACTATAAAATTCACGTGGTGCCTGTTGAGAAAGAATTGGAATTCCCTTGCGAGAAAGAAACACTGTATGACACATTCAATCCGTTTCATGTGGATAAGTCGCTTAGTCCACCGCCCGCGCAAGGTACTGCTGACCAATACGAGCTCGGAGATTTAGGACTCAAATATGGTTTAATCGATGAAGCGAAAAGTTTCAAGTCCTTTTACAATGAAACACAGGTGTCTTTATTTGGTCCTTACAGTATACTAGGACGATCTGTGGTTCTACATAAAAAGAGCCGTGACCGTAGGTGGGCATGTTCGAGTATAGAGCGAGGGTACAGCCCATCAGAAGCTCGTGAAATCCGAGGGATCGCTTCATTCCACCACCCTGGCGGATTCGCTCGAGGCTACATTCGAATGTCCCAACTCATCCACAATGATGGAAGCACCAGCGATACCGTGATAGAAGTAAAGTTGAGGTATCCGGGAGTGAGAGACAGAAACTATACCCGTAATCACAAATGGGAGATATTCGTGAATCCTGTCGGAGTAGATGCTGCAGTTCAAGTGACTAATACTAGATGTGTAGCTGGTGGTTACCGCTGGAATCCGTACTTCACGCAGCTAGCTGATCCATTGAACCATGATCTATACAGTCAAGAGTGCGGGATTGACAATCCACTGCGGTGTGACGTCGGCGATCTGACTGCCAGATTGGGAACGATTAACATCGGTGGTGAGCGTCAAATGCTCATGGACACAAATTTTCCATTGGAAGGTAAAGTGTCTGCAATGGGACGTTCAATCGTGATCTTCGGTCCGGAAAGAACTAGCGAACGATTTGCTTGCGCCAACATCGAACCCGATAATGACATCATCAAATATGTCAATCTGGTTAGAACGCCGAAATTTGTACTTGGTCAATTCTTAGAAGATATTCGGAAAGTAATGGGTGTTCCTGAGTGGATGGTCAGCGTGGACTCGCGTCGTACTCGCGACCTGCACCACTCTACCTGTATTCAGATCCTACTGCACTTCACTGGACCTCACGCCAACAGACTCGAACTTGATTTTACTAGATTACTAGCGTCCGGAAGATTGGATTCGCCGAGTATATTCATACCCGGCTACGTGGATACGAAGAGAAAGAGGGGTACTCAATATAGACATTGCGGAGTCACAGATCCCAATGAGAAGAAAAGAAATTTAGAGGGGCCGTTTTTATTTTTTGGACCTAAATCCTTAGAAAAGTACAAAAGGCCAGCATTGAAGTATTTGGACCAAGATGAGTTGACGAAAATATATGGAGAGCAAGCGGCTATAGTGGTTTTTAATAACCAGGATTCGGTGCCACTTTCCAGTGGATATTTCCCAAGGTTAAGGAAGATGTTGGAGGGTCAGACTGTGTTGGTTTTGCCGCAGGATTTTTTGGATGTTCACCCGGATTACATCAGCAATGAAACCCAGATGCTTACCCTTCAAGGACCATGGTCAGAAAGAGACGCACAGATGACGGAGACATTTGCTCGGCTCCAAGATATCTATGGAGCTGGGCGGGTTTTAGGGATTTTGGGAAATTCCGTTTCACAAAGTCAATCTCCGGACTACGTCGAAGGTGAATGGTCTAGAGTGAGGAGGCAGACTGGTAATGAAACAACAACACCGTCCGGTCAAGAAGAAGAGAAGATGACTAAAGCTGTCCCTAAATACGCATTATATAATGCAACTGGTCCCCCCGGAAAGGGTGCACTTCTCTACTCATCAGGATGGCCTGAGTTACGTTTAGCGAATGGAAAGAGGGTGGTTCTCAGCAATCAAGTTGGCGAATGTACTGTGAAACCGACAAGGCTTTATACTATGCTAGTTGTCAAATTCGCTGATGGAGACAGTAGAGATAAGATAACCCTCGAATTCAGTTTCAAGCAGTCAGCTGGCTGGTGGACGGCCGTCGGAGTCGAGGTCATATTCGGATCCCTCGAAACATCTGGATTGAATTTGAAGGCACCAGCCCCACCTGATGCTCCTTCAGCAGTGCTGGGTCGTTCTTACCATTGTTCTCAGCCTCTTGTGTATACGTCTGATGAGGCAATTTTAAGACTTCCCGATGTTCAGATGCAAATTTTTATGGATAGCACGGAGAGGTTCGCTGATGCTTTTGATTGCATTGGCTTTACAACTGTGCCGATCTGGTCCGGATTAATGGTGTCATTCATAATGCTGCTAGGGCTGGCGGTGTCTGTTTGCATGATAATGGATATTAAGACCATGGACCGCTTTGAGAGTAACAGAAGCAAACAACTGACGATCACTGTTAATGAATAA

Protein

MCLSHVMPKLFWIVFISYLVEPCSSFVLRAYLSQHGLHGEIEFSHKNDTLISIRTNLKPTLQYPDGVWRWTIHEFPVDYRDISESRCSEETLGREIIDLTEELGYLIIPGKDHAEFESKNTLTGPNGLWGRSIVLETAERDRIICASILSTEKLYETHALAKFTAPVAGTLHFRWISAKEIDESDSYIQADLYHAKAVTDKSEYTEHKWKLFVTDIFDSDKGNYEDNCNVLQAVFDPENNGEGMSVGDLDSRLGLIKVATDAKVKKVRTLYKNDVIDILKNDMEMTRRSLYVVIFDNRHVDSFLACAKLRLIPPKSSKVLINMDGIRGTVDFTQRSPFDPTWVNFQLGASDMEYESNLRFVGSMLQYNIRELPPKLLDANQVNYMCNTTGDIYNPMELDLKTLPPPGLSTQDHYPVGDLLGKYKDRTEYLNHKYLLPGLANELSGAYWDVYLPLQGIYSVVHRSLVLERRPGKRNVCGTILLYEDGTEYQIQMSGAQVIFRYPIVGRVIFRQPLDQPWEDTTIIIESMVHADGANVNNTREHRWAIHEHPPGVDYYNWTGRCLSAGKVYEPHSLDIDTRHPEQYCRRGLEGLCRIGDFTTRHGMLSIAGKKVDSDRLTRRLFTDTVISLTGKHSIMRKSLLIYDDHGPVARGERMACSIVNGLHRRKAVVRDWFGNGQQLQLKGKIEMTQQSEYDVTNVQVTIEGLQNVNDYKIHVVPVEKELEFPCEKETLYDTFNPFHVDKSLSPPPAQGTADQYELGDLGLKYGLIDEAKSFKSFYNETQVSLFGPYSILGRSVVLHKKSRDRRWACSSIERGYSPSEAREIRGIASFHHPGGFARGYIRMSQLIHNDGSTSDTVIEVKLRYPGVRDRNYTRNHKWEIFVNPVGVDAAVQVTNTRCVAGGYRWNPYFTQLADPLNHDLYSQECGIDNPLRCDVGDLTARLGTINIGGERQMLMDTNFPLEGKVSAMGRSIVIFGPERTSERFACANIEPDNDIIKYVNLVRTPKFVLGQFLEDIRKVMGVPEWMVSVDSRRTRDLHHSTCIQILLHFTGPHANRLELDFTRLLASGRLDSPSIFIPGYVDTKRKRGTQYRHCGVTDPNEKKRNLEGPFLFFGPKSLEKYKRPALKYLDQDELTKIYGEQAAIVVFNNQDSVPLSSGYFPRLRKMLEGQTVLVLPQDFLDVHPDYISNETQMLTLQGPWSERDAQMTETFARLQDIYGAGRVLGILGNSVSQSQSPDYVEGEWSRVRRQTGNETTTPSGQEEEKMTKAVPKYALYNATGPPGKGALLYSSGWPELRLANGKRVVLSNQVGECTVKPTRLYTMLVVKFADGDSRDKITLEFSFKQSAGWWTAVGVEVIFGSLETSGLNLKAPAPPDAPSAVLGRSYHCSQPLVYTSDEAILRLPDVQMQIFMDSTERFADAFDCIGFTTVPIWSGLMVSFIMLLGLAVSVCMIMDIKTMDRFESNRSKQLTITVNE

Description

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.

Catalytic Activity

a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)

Similarity

Belongs to the RNA polymerase beta chain family.

Uniprot

H9IYH7   A0A2W1BJ09   A0A0N1PFV3   A0A1A9ZF90   A0A1B0GE28   A0A0L0BZK0   + More
A0A1A9XNV0   A0A034V5I5   A0A0K8TZ97   W8C2D4   W8B427   A0A1A9VPW5   A0A0A1X225   B4M6J9   U4UCT9   A0A1B0DAD0   B4K820   B4NGS7   B4JET7   I0C0N1   A0A1I8MHT9   Q9VA99   Q6NP40   A0A182IXP5   A0A1L8E4T0   A0A1L8E4H3   B4PLT4   Q17HX0   A0A1I8QEJ7   B3P7X6   A0A0M3QYE6   A0A182GYL2   B4HZN0   B5DXR8   A0A3B0KX24   A0A1W4W1E8   B0XDR7   B4GNQ2   A0A084VWJ0   A0A1Q3FRU8   A0A026W8D9   E2B7U9   W5JST3   A0A310ST04   A0A195CSC9   A0A154PMW3   A0A2M4BAR8   A0A182LTC5   A0A182NS37   B3LZC7   D6WZU6   A0A2M3ZDT8   A0A182Q996   A0A1Y1N277   A0A2M3Z3G8   A0A182YAJ4   A0A182HLD6   A0A182TY34   A0A182L9S2   A0A182VB04   A0A182PGN2   Q7PXV9   A0A3L8DJR6   A0A182VZC6   A0A0L7R4K7   A0A182K2C2   A0A087ZNA5   A0A232F3F3   K7IPE3   N6UKJ4   A0A182FQ41   A0A182R615   A0A2A3E5W7   A0A151I1H0   A0A151JUV9   A0A151WUK0   A0A182WSI4   A0A2J7PYR0   A0A067QM77   E2A6Q3   E0VIK5   A0A2P8XLB2   A0A1B6GD08   A0A0V0G7R7   A0A146LYU3   A0A146LIY5  

EC Number

2.7.7.6

Pubmed

19121390    28756777    26354079    26108605    25348373    24495485    + More
25830018    17994087    23537049    25315136    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17550304    17510324    26483478    15632085    24438588    24508170    20798317    20920257    23761445    18362917    19820115    28004739    25244985    20966253    12364791    14747013    17210077    30249741    28648823    20075255    24845553    20566863    29403074    26823975   

EMBL

BABH01020641    KZ150119    PZC73227.1    KQ460820    KPJ12105.1    CCAG010012086    + More
JRES01001112    KNC25460.1    GAKP01022154    JAC36798.1    GDHF01032552    JAI19762.1    GAMC01010656    JAB95899.1    GAMC01010655    JAB95900.1    GBXI01009574    JAD04718.1    CH940652    EDW59275.1    KB632302    ERL91774.1    AJVK01013270    CH933806    EDW14354.1    CH964272    EDW84424.2    CH916369    EDV93218.1    BT133436    AFH68360.1    AE014297    AAF57015.5    BT011091    AAR82757.1    GFDF01000542    JAV13542.1    GFDF01000639    JAV13445.1    CM000160    EDW99071.1    CH477245    EAT46219.1    CH954182    EDV53103.1    CP012526    ALC47543.1    JXUM01097745    KQ564367    KXJ72380.1    CH480819    EDW53487.1    CM000070    EDY67509.2    OUUW01000041    SPP89941.1    DS232775    EDS45594.1    CH479186    EDW39378.1    ATLV01017615    KE525177    KFB42334.1    GFDL01004777    JAV30268.1    KK107364    EZA51911.1    GL446209    EFN88242.1    ADMH02000547    ETN65975.1    KQ760287    OAD60882.1    KQ977306    KYN03611.1    KQ434996    KZC13221.1    GGFJ01001004    MBW50145.1    AXCM01004394    CH902617    EDV44106.1    KQ971372    EFA10695.2    GGFM01005976    MBW26727.1    AXCN02000266    GEZM01017316    JAV90775.1    GGFM01002237    MBW22988.1    APCN01000894    AAAB01008987    EAA00894.5    QOIP01000007    RLU20684.1    KQ414657    KOC65778.1    NNAY01001064    OXU25271.1    APGK01029566    KB740735    ENN79202.1    KZ288357    PBC27153.1    KQ976563    KYM80572.1    KQ981738    KYN36526.1    KQ982730    KYQ51514.1    NEVH01020342    PNF21479.1    KK853179    KDR10216.1    GL437183    EFN70893.1    DS235200    EEB13211.1    PYGN01001796    PSN32762.1    GECZ01009444    JAS60325.1    GECL01002022    JAP04102.1    GDHC01006777    JAQ11852.1    GDHC01012219    JAQ06410.1   

Proteomes

UP000005204    UP000053240    UP000092445    UP000092444    UP000037069    UP000092443    + More
UP000078200    UP000008792    UP000030742    UP000092462    UP000009192    UP000007798    UP000001070    UP000095301    UP000000803    UP000075880    UP000002282    UP000008820    UP000095300    UP000008711    UP000092553    UP000069940    UP000249989    UP000001292    UP000001819    UP000268350    UP000192221    UP000002320    UP000008744    UP000030765    UP000053097    UP000008237    UP000000673    UP000078542    UP000076502    UP000075883    UP000075884    UP000007801    UP000007266    UP000075886    UP000076408    UP000075840    UP000075902    UP000075882    UP000075903    UP000075885    UP000007062    UP000279307    UP000075920    UP000053825    UP000075881    UP000005203    UP000215335    UP000002358    UP000019118    UP000069272    UP000075900    UP000242457    UP000078540    UP000078541    UP000075809    UP000076407    UP000235965    UP000027135    UP000000311    UP000009046    UP000245037   

PRIDE

H9IYH7    Q9VA99    Q6NP40   

Pfam

PF00080   Sod_Cu        + More
PF05827   ATP-synt_S1
PF00005   ABC_tran
PF12848   ABC_tran_Xtn
PF09995   DUF2236
PF04565   RNA_pol_Rpb2_3
PF00562   RNA_pol_Rpb2_6
PF04561   RNA_pol_Rpb2_2
PF04566   RNA_pol_Rpb2_4
PF04560   RNA_pol_Rpb2_7
PF04563   RNA_pol_Rpb2_1
PF04567   RNA_pol_Rpb2_5

Interpro

IPR036423   SOD-like_Cu/Zn_dom_sf        + More
IPR008388   ATPase_V1-cplx_s1su       
IPR001424   SOD_Cu_Zn_dom       
IPR011992   EF-hand-dom_pair       
IPR002048   EF_hand_dom       
IPR018247   EF_Hand_1_Ca_BS       
IPR027417   P-loop_NTPase       
IPR003439   ABC_transporter-like       
IPR017871   ABC_transporter_CS       
IPR032781   ABC_tran_Xtn       
IPR003593   AAA+_ATPase       
IPR018713   DUF2236       
IPR037033   DNA-dir_RNAP_su2_hyb_sf       
IPR007645   RNA_pol_Rpb2_3       
IPR007646   RNA_pol_Rpb2_4       
IPR037034   RNA_pol_Rpb2_2_sf       
IPR007641   RNA_pol_Rpb2_7       
IPR007644   RNA_pol_bsu_protrusion       
IPR014724   RNA_pol_RPB2_OB-fold       
IPR007642   RNA_pol_Rpb2_2       
IPR007120   DNA-dir_RNAP_su2_dom       
IPR015712   DNA-dir_RNA_pol_su2       
IPR007647   RNA_pol_Rpb2_5       
IPR007121   RNA_pol_bsu_CS       

SUPFAM

SSF49329   SSF49329        + More
SSF47473   SSF47473       
SSF52540   SSF52540       

Gene 3D

2.60.40.200     2.40.270.10     2.40.50.150     3.90.1110.10    

CDD

cd00051  EFh
cd00653  RNA_pol_B_RPB2

ProteinModelPortal

H9IYH7   A0A2W1BJ09   A0A0N1PFV3   A0A1A9ZF90   A0A1B0GE28   A0A0L0BZK0   + More
A0A1A9XNV0   A0A034V5I5   A0A0K8TZ97   W8C2D4   W8B427   A0A1A9VPW5   A0A0A1X225   B4M6J9   U4UCT9   A0A1B0DAD0   B4K820   B4NGS7   B4JET7   I0C0N1   A0A1I8MHT9   Q9VA99   Q6NP40   A0A182IXP5   A0A1L8E4T0   A0A1L8E4H3   B4PLT4   Q17HX0   A0A1I8QEJ7   B3P7X6   A0A0M3QYE6   A0A182GYL2   B4HZN0   B5DXR8   A0A3B0KX24   A0A1W4W1E8   B0XDR7   B4GNQ2   A0A084VWJ0   A0A1Q3FRU8   A0A026W8D9   E2B7U9   W5JST3   A0A310ST04   A0A195CSC9   A0A154PMW3   A0A2M4BAR8   A0A182LTC5   A0A182NS37   B3LZC7   D6WZU6   A0A2M3ZDT8   A0A182Q996   A0A1Y1N277   A0A2M3Z3G8   A0A182YAJ4   A0A182HLD6   A0A182TY34   A0A182L9S2   A0A182VB04   A0A182PGN2   Q7PXV9   A0A3L8DJR6   A0A182VZC6   A0A0L7R4K7   A0A182K2C2   A0A087ZNA5   A0A232F3F3   K7IPE3   N6UKJ4   A0A182FQ41   A0A182R615   A0A2A3E5W7   A0A151I1H0   A0A151JUV9   A0A151WUK0   A0A182WSI4   A0A2J7PYR0   A0A067QM77   E2A6Q3   E0VIK5   A0A2P8XLB2   A0A1B6GD08   A0A0V0G7R7   A0A146LYU3   A0A146LIY5  

PDB

2E46     E-value=0.0863436,     Score=89

KEGG

101739289    no KO assigned | (RefSeq) uncharacterized LOC101739289

GO

GO:0033180   GO:0046961   GO:0046933   GO:0016021   GO:0006801   GO:0046872   GO:0015991   GO:0005509   GO:0016887   GO:0005524   GO:0032549   GO:0006351   GO:0003899   GO:0003677   GO:0020037   GO:0004983   GO:0005634   GO:0006270   GO:0042555   GO:0003707   GO:0006281   GO:0006259  

PANTHER

PTHR20856  

SignalP

Position:   1 - 25,         Likelihood:  0.780353

 

 

Length:

1477

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

25.18639

Exp number, first 60 AAs:

2.52987

Total prob of N-in:

0.11768

outside

1  -  1429

TMhelix

1430  -  1452

inside

1453  -  1477

 

 

Pi

226.794193

Theta

160.948418

Tajima's D

1.677932

CLR

0.383967

CSRT

0.826458677066147

Interpretation

Uncertain