Gene

KWMTBOMO15716

Pre Gene Modal

BGIBMGA002260

Annotation

PREDICTED:_protein_C12orf4_homolog_[Amyelois_transitella]

Location

Bomo_Chr26(-):7214820-7222661      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.621

CDS

ATGATTTCAGAAACAATTCAAAATACAACAAAAACCTTTAAATATTCATTTCCAACATGCACGAACGAAAATGTCTTGTTCAATCTAGAAGTTCCTGTGGATATTCCGTATGATGGTTCCACGAGAGAGCTCGTACAAAGAGTTATAAATATGTTTCACATTCCAGTATATTTAGAAGAAGAATTAAACGATAGACTATCAGAATTTGTAGCTGACGAAACAAAAAGATTTCACAACGAAAGAGATGAAGAATTATTGAACAAACTAAAGAATAATGAAATAAACTTAGATGATGTTGTTCAAAAATGGGAAAAGCTCTTTAAAGAGAACGTTGTGGAATTCGCAGAACAAAAAGGAACCCCAGATGAAGAGGTATTTGCAGTAGCATACCACAAATTAGTTCACTCACCAGCTCTGGAGACCATTCTACAAGTAGAAAACTCCTATGCCAAAACCGTTATGAATACCTTAAAGAATAGAGATGATGATATCGTAAAACTGACACAAAAACAAACTGAAGAAATGGAAGAAAAAGTACGTCTTCTGAACACTTCAACCACAGAAGTTGAGATCAATGAATTAGCCACCCAGCAGTTTGAAGAGCAAGCCTTAGTTTCAGGCCGATGGGGATCTCAGCTGGACGCCTTGTGTCAAACGCAAAGAACACATCACAGAGCATGGCTAATGGCGACTTTGCAGGAGTACCAGACCACATCAGCCTTGCATACACCAAGCAATTCTCCGCTGGGTATATTCTCGCCGTCTCCATGCTCATCCCTACCCGAGGCTCCAACCCGACCTCGTCTTGAAGAAAGCTTCACCATACACCTCGGAAGTCAACTCAAACAGACGCACAACATTCGCATTGTCGCTATGGACCTGCTCGACCTGTGCAATGTTGATCATGACAACCCTACAGAATCGTCACGTCGCCTCCAAACTTCCCTATCGTTGTATTCATCGGAACTATCAGCGGTGATTCTCCTCAGCGAGTCTCCCCCTGAACGACCCTCGCCCCCCACCACACAGCTAGTGGACGCGGCCAAGTCCTCGACGGAGTATCACTTCCACGACGTCGAGTATCAATTGCGGGAAATCAGCAAGAAAGTCAAGGAGCCAGTCGAACGCCGTAACACTCAGCGCAGCAAAGAACAAAACGACAGCAATAACACGCAAACCCACAACAACCCATTTAGGAACAGATGGAGACAAAACCTGCAGACTGGAGACATATACCTGACTAAGCACAGCAACTTGGCTGACGTGCACGTTGTCTTCCATCTTGTTGCCGACGACTCTTCTCTGAGATCCGGTGATATCACGTCTCGTCATCCGGTAATCCTCGGCTTACGTAACATCCTGAAAGCGGCTTGCAGTAATGATATCACCAGTATATCGCTGCCTCTGCTGTTGCGACACGAATTATCAGAGGAAATGACGGCAGCGTGGTGCATCCGTCGTGCGGAATTGATCCTGAAATGCGTCAAAGGGTTCATGTTGGAGGCGGCCGGGTGGGGCGGGGCTGAACTCCGCACCCTACAGTTCGCAGTACCAACGAACACCGCGCCAGAAGTGTTTTCGACTCTCGCTAATCTACTGCCCTCTATATTCAGAATATCTAATCCGGTCAAGTTTAAAGCGAACTCTTAA

Protein

MISETIQNTTKTFKYSFPTCTNENVLFNLEVPVDIPYDGSTRELVQRVINMFHIPVYLEEELNDRLSEFVADETKRFHNERDEELLNKLKNNEINLDDVVQKWEKLFKENVVEFAEQKGTPDEEVFAVAYHKLVHSPALETILQVENSYAKTVMNTLKNRDDDIVKLTQKQTEEMEEKVRLLNTSTTEVEINELATQQFEEQALVSGRWGSQLDALCQTQRTHHRAWLMATLQEYQTTSALHTPSNSPLGIFSPSPCSSLPEAPTRPRLEESFTIHLGSQLKQTHNIRIVAMDLLDLCNVDHDNPTESSRRLQTSLSLYSSELSAVILLSESPPERPSPPTTQLVDAAKSSTEYHFHDVEYQLREISKKVKEPVERRNTQRSKEQNDSNNTQTHNNPFRNRWRQNLQTGDIYLTKHSNLADVHVVFHLVADDSSLRSGDITSRHPVILGLRNILKAACSNDITSISLPLLLRHELSEEMTAAWCIRRAELILKCVKGFMLEAAGWGGAELRTLQFAVPTNTAPEVFSTLANLLPSIFRISNPVKFKANS

Uniprot

H9IYC7   A0A2W1BHN7   A0A2A4J411   A0A0N1PG23   A0A0N1PFL8   A0A212FE71   + More
A0A067R148   A0A2J7R583   F4X8L9   A0A151WF79   A0A232F201   A0A3L8DVW3   A0A026W6T0   E2A1I7   E2BIG5   A0A154P745   A0A158NBK3   A0A195DRE1   A0A0C9PVL5   A0A0J7LA42   A0A0L7QRM3   A0A2A3ETN7   A0A088AE66   A0A195B9R9   A0A1B6G7P0   E9J9G1   A0A1B6L9E9   A0A195C6G4   A0A158NC14   A0A0C9RB08   D6W6Q1   J9JV81   A0A2H8TL98   A0A2S2P6I4   A0A2S2Q0V7   N6U5G4   A0A2J7R590   A0A0A9Z135   A0A1Y1N9I2   E0VWS5   K1QEZ2   A0A023F0I4   A0A0V0GCB7   A0A224XMZ4   A0A069DUJ6   V3ZTG6   T1JFI6   A0A2C9JQK1   A0A087U8J7   A0A1I8NN21   A0A1I8M679   A0A0P4VNU8   B4JUA0   R7VA97   A0A0L0BYE2   A0A0L8G0S4   A0A3Q3BR28   A0A3Q1FR27   A0A3P8RKM3   A0A3B0K724   Q29BI8   A0A3B4GSI6   I3JVM2   A0A3S1BPI5   B4K8E1   A0A3P8YAG8   A0A2I4DBK6   A0A3Q3VPF0   A0A2I4DBL8   A0A1E1XM36   B4LWP0   A0A3P8PI24   A0A3P9CHS7   A0A3Q0R6R2   A0A293M2Y3   A0JMN9   H2TJU3   A0A0F8AES9   A0A0K8U0J3   A0A146TQ48   A0A3B5Q704   A0A3B4ZYT3   A0A3P9MWE8   B4GP02   A0A3Q1IR09   A0A3Q2FRI4   A0A3Q3E058   A0A1S3K0H4   A0A1A7WQA9   B3P5S0   A0A210QSS9   A0A1S3MK28   A0A3B4VIU8   A0A087XLF2   A0A2I4DBJ8   A0A1W4W2J0   A0A2R5LF48   A0A3B3DY19  

Pubmed

19121390    28756777    26354079    22118469    24845553    21719571    + More
28648823    30249741    24508170    20798317    21347285    21282665    18362917    19820115    23537049    25401762    26823975    28004739    20566863    22992520    25474469    26334808    23254933    15562597    25315136    27129103    17994087    26108605    15632085    25186727    18057021    25069045    29209593    23594743    21551351    25835551    23542700    28812685    29451363   

EMBL

BABH01020639    KZ150119    PZC73225.1    NWSH01003383    PCG66418.1    KQ459199    + More
KPJ02967.1    KQ460820    KPJ12108.1    AGBW02008963    OWR52065.1    KK852818    KDR15654.1    NEVH01007392    PNF35998.1    GL888932    EGI57288.1    KQ983227    KYQ46492.1    NNAY01001183    OXU24826.1    QOIP01000004    RLU24235.1    KK107372    EZA51765.1    GL435766    EFN72660.1    GL448504    EFN84553.1    KQ434827    KZC07653.1    ADTU01011144    KQ980581    KYN15377.1    GBYB01005498    JAG75265.1    LBMM01000076    KMR05056.1    KQ414775    KOC61290.1    KZ288192    PBC34411.1    KQ976540    KYM81276.1    GECZ01025642    GECZ01011335    JAS44127.1    JAS58434.1    GL769313    EFZ10531.1    GEBQ01019654    JAT20323.1    KQ978219    KYM96432.1    ADTU01011145    ADTU01011146    GBYB01005500    JAG75267.1    KQ971307    EFA10962.1    ABLF02033606    GFXV01003121    MBW14926.1    GGMR01012444    MBY25063.1    GGMS01002101    MBY71304.1    APGK01039126    APGK01039127    KB740967    KB632399    ENN76845.1    ERL94666.1    PNF35997.1    GBHO01031685    GBHO01005456    GBHO01005450    GDHC01007069    JAG11919.1    JAG38148.1    JAG38154.1    JAQ11560.1    GEZM01011376    JAV93540.1    DS235824    EEB17831.1    JH817657    EKC29664.1    GBBI01003730    JAC14982.1    GECL01000494    JAP05630.1    GFTR01007035    JAW09391.1    GBGD01001096    JAC87793.1    KB203566    ESO84206.1    JH432169    KK118720    KFM73686.1    GDKW01001948    JAI54647.1    CH916374    EDV91070.1    AMQN01004487    KB293638    ELU15738.1    JRES01001160    KNC25040.1    KQ424993    KOF70180.1    OUUW01000005    SPP80801.1    CM000070    EAL27010.2    AERX01017131    RQTK01000083    RUS88413.1    CH933806    EDW16523.1    KRG02179.1    GFAA01003120    JAU00315.1    CH940650    EDW67705.1    GFWV01010543    MAA35272.1    CR396584    BC125950    AAI25951.1    KQ042670    KKF12078.1    GDHF01032253    GDHF01029832    GDHF01023829    GDHF01021543    GDHF01012690    GDHF01010437    JAI20061.1    JAI22482.1    JAI28485.1    JAI30771.1    JAI39624.1    JAI41877.1    GCES01091339    JAQ94983.1    CH479186    EDW38885.1    HADW01006505    HADX01009383    SBP07905.1    CH954182    EDV53320.1    NEDP02002059    OWF51817.1    AYCK01018557    AYCK01018558    GGLE01004024    MBY08150.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000027135    + More
UP000235965    UP000007755    UP000075809    UP000215335    UP000279307    UP000053097    UP000000311    UP000008237    UP000076502    UP000005205    UP000078492    UP000036403    UP000053825    UP000242457    UP000005203    UP000078540    UP000078542    UP000007266    UP000007819    UP000019118    UP000030742    UP000009046    UP000005408    UP000030746    UP000076420    UP000054359    UP000095300    UP000095301    UP000001070    UP000014760    UP000037069    UP000053454    UP000264800    UP000257200    UP000265080    UP000268350    UP000001819    UP000261460    UP000005207    UP000271974    UP000009192    UP000265140    UP000192220    UP000261620    UP000008792    UP000265100    UP000265160    UP000261340    UP000000437    UP000005226    UP000002852    UP000261400    UP000242638    UP000008744    UP000265040    UP000265020    UP000261660    UP000085678    UP000008711    UP000242188    UP000087266    UP000261420    UP000028760    UP000192221    UP000261560   

PRIDE

H9IYC7   

Pfam

PF10154   DUF2362        + More
PF13855   LRR_8

Interpro

IPR019311   DUF2362        + More
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR001611   Leu-rich_rpt       
IPR032675   LRR_dom_sf       
IPR000483   Cys-rich_flank_reg_C       

Gene 3D

3.80.10.10    

ProteinModelPortal

H9IYC7   A0A2W1BHN7   A0A2A4J411   A0A0N1PG23   A0A0N1PFL8   A0A212FE71   + More
A0A067R148   A0A2J7R583   F4X8L9   A0A151WF79   A0A232F201   A0A3L8DVW3   A0A026W6T0   E2A1I7   E2BIG5   A0A154P745   A0A158NBK3   A0A195DRE1   A0A0C9PVL5   A0A0J7LA42   A0A0L7QRM3   A0A2A3ETN7   A0A088AE66   A0A195B9R9   A0A1B6G7P0   E9J9G1   A0A1B6L9E9   A0A195C6G4   A0A158NC14   A0A0C9RB08   D6W6Q1   J9JV81   A0A2H8TL98   A0A2S2P6I4   A0A2S2Q0V7   N6U5G4   A0A2J7R590   A0A0A9Z135   A0A1Y1N9I2   E0VWS5   K1QEZ2   A0A023F0I4   A0A0V0GCB7   A0A224XMZ4   A0A069DUJ6   V3ZTG6   T1JFI6   A0A2C9JQK1   A0A087U8J7   A0A1I8NN21   A0A1I8M679   A0A0P4VNU8   B4JUA0   R7VA97   A0A0L0BYE2   A0A0L8G0S4   A0A3Q3BR28   A0A3Q1FR27   A0A3P8RKM3   A0A3B0K724   Q29BI8   A0A3B4GSI6   I3JVM2   A0A3S1BPI5   B4K8E1   A0A3P8YAG8   A0A2I4DBK6   A0A3Q3VPF0   A0A2I4DBL8   A0A1E1XM36   B4LWP0   A0A3P8PI24   A0A3P9CHS7   A0A3Q0R6R2   A0A293M2Y3   A0JMN9   H2TJU3   A0A0F8AES9   A0A0K8U0J3   A0A146TQ48   A0A3B5Q704   A0A3B4ZYT3   A0A3P9MWE8   B4GP02   A0A3Q1IR09   A0A3Q2FRI4   A0A3Q3E058   A0A1S3K0H4   A0A1A7WQA9   B3P5S0   A0A210QSS9   A0A1S3MK28   A0A3B4VIU8   A0A087XLF2   A0A2I4DBJ8   A0A1W4W2J0   A0A2R5LF48   A0A3B3DY19  

KEGG

101739151    no KO assigned | (RefSeq) protein C12orf4 homolog

GO

GO:0016021  

PANTHER

PTHR16525  

Length:

549

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02498

Exp number, first 60 AAs:

0.00089

Total prob of N-in:

0.00397

outside

1  -  549

 

 

Pi

280.888796

Theta

159.092802

Tajima's D

2.521455

CLR

0

CSRT

0.945702714864257

Interpretation

Uncertain