Gene

KWMTBOMO15693

Pre Gene Modal

BGIBMGA002304

Annotation

PREDICTED:_protein_SHQ1_homolog_[Bombyx_mori]

Location

Bomo_Chr26(+):6745350-6746967      View in EpiBrowser

Full name

Protein SHQ1 homolog      

Location in the cell

Nuclear   Reliability : 3.32

CDS

ATGCTTACTCCACGTTTTAAATTAACGCAAGACGACAACCACATATTCGTAACAGTTCACGCACCGTATACAAACATTGGAGATACAGAAATAGATGTTGATGGCGAAAATTTCCTTTTTGTGTCTAGTCCTTACTTCCTTCGATTGCGATTACCTGGCAGGATCGTTGATGATGATCGGGCAAAAGGTTCATACACTTGTGATTCGGGAGACTTCAATCTCACATTTGAAAAAGAAACTGCCGGGGAACATTTTGAGAACCTTGATATGATCACAAATTTACTAGCACCTCGTGATATACCAGATGTCAATCCTAATCTAGTTGAAATGCTTGAAGAAGATGGAATTACCCTGGAAAATGATAGTGACAGTGAGAACTTAGAAAAATTCACATATGGCTTTGCTAATAAAATATCCAATGAATTTTGCAGCATCGGAAATGAATTTCCACAAATTTTTGAATTAAAAGCACCTGAAAATGTTGCTGTGGACGAACGTAATTCTATGAGGATGAAACATGAAAATGATAAATTCTCGTCTGATCATTATCTAGCAGACTTTTTTGATGATGAACTTCTTGCACCCTACTTATCATCCACTTCTTATTGGGACAAAGGGGATTTCAAAAATGAAGTAGAATTTACAGATGAAGAAGTAGCCATATTAAAAGAATTGCCAAACAAGCATTATTTGCTAAGCAAAGAAGAGTATAGAGAAATTATGCTCGGATTAATAGATATCTTGTTTGGGTATTGCTACGACAAAAGAACAACATTAAATGAAAGCACAGTGGAGTCAAGCTGGACCATAAACAAGCTTTCTTCAACACTAAGTTGGTTCTGCACTTTCTTAGATACAAGACATGTTTTGATTGCATGCTACAGGAGAGCACTCACTTATCCGATATTTAGGAACTATGAGCTGTGTAACAAAGTAAAGAATGATCTAGTATCACTATTACGTAAAGGCAAGAAATTGGTAATAAAATGTATGATTGAAGTACATCAAATGTTCAACACTAGTAATGATGCACGTTATATCTTAAACCAGCTTTATATCAAAGACTATTTGGTGTTCTTACAAAAATGTCGTAATGAGGAAATCATGGAAATATGCAATAATATAGCTAATATTGAGCTCTGTAAAAAAGATTTGAACTTAGAGTTAGATGAATTGGAAATGGCTGCTGAAATGGTTAAACAGGAAGAAACTGAAATCATGGAGAATGAGATGGCCGTCCAAATGGCTTCCATGTCTTTACTACCGGGACTGAAAAAGAATATTGCTCCATACCTTGATGAGAGTGATGATGACACTGACAGCTCAACGGACTCAAGTGATGATAGTTCTTCTGAAGATTCCTCTGATGAAGGCCTAGATTCTGATGATGATCCATGA

Protein

MLTPRFKLTQDDNHIFVTVHAPYTNIGDTEIDVDGENFLFVSSPYFLRLRLPGRIVDDDRAKGSYTCDSGDFNLTFEKETAGEHFENLDMITNLLAPRDIPDVNPNLVEMLEEDGITLENDSDSENLEKFTYGFANKISNEFCSIGNEFPQIFELKAPENVAVDERNSMRMKHENDKFSSDHYLADFFDDELLAPYLSSTSYWDKGDFKNEVEFTDEEVAILKELPNKHYLLSKEEYREIMLGLIDILFGYCYDKRTTLNESTVESSWTINKLSSTLSWFCTFLDTRHVLIACYRRALTYPIFRNYELCNKVKNDLVSLLRKGKKLVIKCMIEVHQMFNTSNDARYILNQLYIKDYLVFLQKCRNEEIMEICNNIANIELCKKDLNLELDELEMAAEMVKQEETEIMENEMAVQMASMSLLPGLKKNIAPYLDESDDDTDSSTDSSDDSSSEDSSDEGLDSDDDP

Description

Required for the quantitative accumulation of H/ACA ribonucleoproteins (RNPs), including telomerase, probably through the stabilization of DKC1, from the time of its synthesis until its association with NOP10, NHP2, and NAF1 at the nascent H/ACA RNA.
Required for the quantitative accumulation of H/ACA ribonucleoproteins (RNPs).

Subunit

Directly interacts with DKC1 alone, but not in the context of the core trimer composed of DKC1, NOP10 and NHP2, nor in the presence of NAF1. Does not interact with NAF1 (By similarity).

Similarity

Belongs to the SHQ1 family.

Keywords

Alternative splicing   Complete proteome   Cytoplasm   Nucleus   Reference proteome  

Feature

chain  Protein SHQ1 homolog
splice variant  In isoform 2.

Uniprot

H9IYH0   A0A0L7KMF6   A0A2A4JL39   A0A2W1BE74   A0A2H1VKS2   A0A212F971   + More
A0A0N1IDN2   A0A194QDW0   A0A088AAZ0   A0A3L8E5C0   A0A0L7RFW2   A0A154PF66   A0A0J7KL61   A0A0M8ZU92   E9IW54   A0A195E1P5   F4X477   A0A151XGE5   A0A158N9I7   A0A151I4L9   A0A151JV24   E2AE75   A0A2A3EFZ0   E2C289   A0A232EF33   A0A151I9Y0   K7J4M0   E9GHV4   A0A0P5QR75   A0A0P6CL80   A0A0N8CFF0   A0A0P5ZDR4   A0A0N8BL31   A0A023EZQ2   A0A1B6M5G6   A0A1B6J577   G3GS48   A0A026WE55   A0A069DUB8   A0A0P5JZP1   A0A0P4VJW5   A0A0P5JLV7   Q7TMX5   A0A0P5RRP1   B3DLL9   A0A1U7QCY0   A0A0V0G9M8   A0A1L8GPX8   A0A3Q2EEU9   A0A1B6H022   N6T981   V4A4G6   F7B158   B4F784   A0A369S9N8   D6W9B7   Q05B18   T1IBG0   A0A3S2Q7I6   A0A3B3B5C8   A0A1W2WA31   E6ZFM1   A0A3Q1HWA5   A0A3Q0SRE8   A0A1Y1LP12   A0A091MR24   A0A1A7XLI0   A0A3Q1BX16   M3WHK8   G1M9D7   A0A3P8U0X6   A0A2U9BHA0   A0A1A8U7H4   A0A218UGS2   H0ZI29   A0A2K6ELY8   G3PDD7   A0A2Y9HMD0   A0A3Q1F4H0   A0A1U7UKN1   A0A1A8CAZ6   A0A1S3JWM7   A0A2U3W8L9   H2YF39   A0A1A8F0N8   A0A1A8J221   F6VH72   A0A3Q7Q6D5   A0A3B3QE13   A0A3Q7X347   A0A1W4YMJ3   A0A151MKP6   A0A384D3P9   W4XN03   H0VJ68   A0A3Q7VWN3   A0A3Q7V772   F6TT60   H9EXK8   A0A3Q3J2J9  

Pubmed

19121390    26227816    28756777    22118469    26354079    30249741    + More
21282665    21719571    21347285    20798317    28648823    20075255    21292972    25474469    21804562    24508170    26334808    27129103    16141072    15489334    21183079    27762356    23537049    23254933    20431018    15057822    30042472    18362917    19820115    29451363    28004739    17975172    20010809    20360741    12481130    15114417    29240929    22293439    21993624    19892987    25319552   

EMBL

BABH01020577    JTDY01008618    KOB64483.1    NWSH01001161    PCG72304.1    KZ150122    + More
PZC73168.1    ODYU01003100    SOQ41430.1    AGBW02009638    OWR50270.1    KQ461111    KPJ08943.1    KQ459144    KPJ03609.1    QOIP01000001    RLU27583.1    KQ414601    KOC69723.1    KQ434886    KZC10084.1    LBMM01006043    KMQ90989.1    KQ435844    KOX71265.1    GL766449    EFZ15223.1    KQ979814    KYN19016.1    GL888628    EGI58745.1    KQ982169    KYQ59469.1    ADTU01009655    KQ976461    KYM84706.1    KQ981713    KYN37342.1    GL438827    EFN68308.1    KZ288267    PBC30076.1    GL452091    EFN77936.1    NNAY01005158    OXU16938.1    KQ978264    KYM95835.1    AAZX01007478    GL732545    EFX80983.1    GDIQ01120484    JAL31242.1    GDIQ01090747    JAN03990.1    GDIP01137047    JAL66667.1    GDIP01046160    LRGB01002580    JAM57555.1    KZS06934.1    GDIQ01167211    JAK84514.1    GBBI01003970    JAC14742.1    GEBQ01008800    JAT31177.1    GECU01013390    JAS94316.1    JH000006    EGW05003.1    KK107260    EZA54203.1    GBGD01001344    JAC87545.1    GDIQ01196861    JAK54864.1    GDKW01001279    JAI55316.1    GDIQ01196860    JAK54865.1    AK012978    BC052657    GDIQ01096989    JAL54737.1    BC167497    AAI67497.1    GECL01001507    JAP04617.1    CM004472    OCT85918.1    GECZ01001735    JAS68034.1    APGK01039088    KB740967    KB632399    ENN76804.1    ERL94709.1    KB202518    ESO89850.1    AAMC01084469    AAMC01084470    AAMC01084471    AAMC01084472    AAMC01084473    AABR07061545    AABR07061546    BC168172    AAI68172.1    NOWV01000042    RDD43192.1    KQ971312    EEZ98184.1    BC123006    ACPB03000221    CM012441    RVE72652.1    FQ310506    CBN80971.1    GEZM01050780    JAV75382.1    KK835465    KFP79705.1    HADW01017294    SBP18694.1    AANG04003845    ACTA01089972    ACTA01097972    ACTA01105972    ACTA01113972    ACTA01121972    CP026248    AWP03383.1    HADY01006607    HAEJ01002576    SBS43033.1    MUZQ01000312    OWK52953.1    ABQF01038095    HADZ01012858    SBP76799.1    HAEB01005836    SBQ52363.1    HAED01017280    SBR03725.1    EAAA01000291    AKHW03005996    KYO24960.1    AAGJ04023455    AAGJ04023456    AAKN02022070    AAKN02022071    JU323361    AFE67117.1   

Proteomes

UP000005204    UP000037510    UP000218220    UP000007151    UP000053240    UP000053268    + More
UP000005203    UP000279307    UP000053825    UP000076502    UP000036403    UP000053105    UP000078492    UP000007755    UP000075809    UP000005205    UP000078540    UP000078541    UP000000311    UP000242457    UP000008237    UP000215335    UP000078542    UP000002358    UP000000305    UP000076858    UP000001075    UP000053097    UP000000589    UP000189706    UP000186698    UP000265020    UP000019118    UP000030742    UP000030746    UP000008143    UP000002494    UP000253843    UP000007266    UP000015103    UP000261560    UP000265040    UP000261340    UP000257160    UP000011712    UP000008912    UP000265080    UP000246464    UP000197619    UP000007754    UP000233160    UP000007635    UP000248481    UP000257200    UP000189704    UP000085678    UP000245340    UP000007875    UP000008144    UP000286641    UP000261540    UP000286642    UP000192224    UP000050525    UP000261680    UP000007110    UP000005447    UP000002281    UP000261600   

PRIDE

H9IYH0    G3GS48    Q7TMX5   

Pfam

PF04925   SHQ1

Interpro

IPR039742   Shq1        + More
IPR008978   HSP20-like_chaperone       
IPR007009   Shq1_dom       
IPR007052   CS_dom       

SUPFAM

SSF49764   SSF49764       

Gene 3D

2.60.40.790    

ProteinModelPortal

H9IYH0   A0A0L7KMF6   A0A2A4JL39   A0A2W1BE74   A0A2H1VKS2   A0A212F971   + More
A0A0N1IDN2   A0A194QDW0   A0A088AAZ0   A0A3L8E5C0   A0A0L7RFW2   A0A154PF66   A0A0J7KL61   A0A0M8ZU92   E9IW54   A0A195E1P5   F4X477   A0A151XGE5   A0A158N9I7   A0A151I4L9   A0A151JV24   E2AE75   A0A2A3EFZ0   E2C289   A0A232EF33   A0A151I9Y0   K7J4M0   E9GHV4   A0A0P5QR75   A0A0P6CL80   A0A0N8CFF0   A0A0P5ZDR4   A0A0N8BL31   A0A023EZQ2   A0A1B6M5G6   A0A1B6J577   G3GS48   A0A026WE55   A0A069DUB8   A0A0P5JZP1   A0A0P4VJW5   A0A0P5JLV7   Q7TMX5   A0A0P5RRP1   B3DLL9   A0A1U7QCY0   A0A0V0G9M8   A0A1L8GPX8   A0A3Q2EEU9   A0A1B6H022   N6T981   V4A4G6   F7B158   B4F784   A0A369S9N8   D6W9B7   Q05B18   T1IBG0   A0A3S2Q7I6   A0A3B3B5C8   A0A1W2WA31   E6ZFM1   A0A3Q1HWA5   A0A3Q0SRE8   A0A1Y1LP12   A0A091MR24   A0A1A7XLI0   A0A3Q1BX16   M3WHK8   G1M9D7   A0A3P8U0X6   A0A2U9BHA0   A0A1A8U7H4   A0A218UGS2   H0ZI29   A0A2K6ELY8   G3PDD7   A0A2Y9HMD0   A0A3Q1F4H0   A0A1U7UKN1   A0A1A8CAZ6   A0A1S3JWM7   A0A2U3W8L9   H2YF39   A0A1A8F0N8   A0A1A8J221   F6VH72   A0A3Q7Q6D5   A0A3B3QE13   A0A3Q7X347   A0A1W4YMJ3   A0A151MKP6   A0A384D3P9   W4XN03   H0VJ68   A0A3Q7VWN3   A0A3Q7V772   F6TT60   H9EXK8   A0A3Q3J2J9  

PDB

4PBD     E-value=9.3118e-21,     Score=248

KEGG

101737981    K14764 protein SHQ1 | (RefSeq) protein SHQ1 homolog

GO

GO:0000493   GO:0005654   GO:0005737   GO:0051082   GO:0043065   GO:0005829   GO:2000233   GO:0022618  

PANTHER

PTHR12967  

Subcellular location

Cytoplasm   May at least partially shuttle between cytosol and nucleoplasm.   With evidence from 1 publications.
Cytosol   May at least partially shuttle between cytosol and nucleoplasm.   With evidence from 1 publications.
Nucleus   May at least partially shuttle between cytosol and nucleoplasm.   With evidence from 1 publications.
Nucleoplasm   May at least partially shuttle between cytosol and nucleoplasm.   With evidence from 1 publications.

Length:

465

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00185

Exp number, first 60 AAs:

0.00019

Total prob of N-in:

0.00254

outside

1  -  465

 

 

Pi

36.407867

Theta

80.130599

Tajima's D

-1.680993

CLR

118.346004

CSRT

0.0390480475976201

Interpretation

Uncertain