SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15681
Pre Gene Modal
BGIBMGA002300
Annotation
PREDICTED:_lateral_signaling_target_protein_2_homolog_[Amyelois_transitella]
Location
Bomo_Chr26(+):6296249-6312053      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.496
 

Sequence

CDS
ATGTATGATCGCGTCTTGAACATCACTAGTCAGATCATGGATCAAGTTCTGGGCGACGAAAGGGTGGCGCGCGGCTTCCGAGTCAAGTTCCCAGAGGACGTTCTGCAAGACAACTTAGCTGGGCAGCTTTGGTTTGGCGCTGAGTGTCTCGCCGCTGGTTCGTCAATAATGAATCGCGAAGAAGAATCGGCATCGATGCGCCCCCTAGCCAAAGCTTTGACGCGGAGCTTAGAGACCGTGAGGTCTTTGCTGCGAGAGCAGTGCCTTCGTCCCCGAGGACTGGCTTTGTCGCAGCACGATGACATGCTCCACGAAAGCCTGAGAATTTTTGATCGTTTGTTTGCTGAATTCGAACTATGCTATGTCAGCGCTATGGTGAACGTCAAAACCCCCCAAGAGTTCGAAGCGCAGCAGCTGATTTGCGTCCTGTTCTCGGAGAGCCTTCGTCGCGCCCTCAAACAGAACTTATTAGCTCAAGAGCAGGTGGATTCTTACGATCCGGCACTGATGTTCGCAGTTCCGCGTTTGGCAATCGTTAGCGGCTTGCTCATATACTCAAGTGGGCCACTGAGCATTAACAAACCGCCAGAAGAGATGTCCGTGATGTTCCGTCCGTTCCGTACTCTGCTGAACAAGATAAGGTCGTTGCTGTGGACCTTGGACCGCCGCGAGCTGTTGGCCCTCGAGCGGTTGCTCTGCACCAACGAGGACATAACCAATCTGGCCGCGCTTGGTCTACCGTCGCCTCTGAATTCAGACACACCCGAAGACTCATCGTGTCCGTACCCCGATATCGAAGAGTTTGTTTCAAGATTTTACACTGACTACGCTCACTGCCGCGACCTCTACGCGCAAAGTTCAAGCGAACCCACGATAACGGACGCCGACTATCTACCCGACAACATAGAAGTGATGACACCGATTATCGACGGACTTCGTCGCCTGACCGAGTTCGCGGACACCCACGACGAGTCGTCGGACCACGAGAAGCCTCGACATTCTATCGACACGGCCAGCACTGACACATTCCAAACCGACTACATCGATAGATCTAGAAAGACCAGCAAAACGGAGAACAGCGACCTGTCCTCGCTCAGGAACCTATCGACGAACGGGCTCATGATGTTCGATCCTCTGGTGATCAACGCGGCCGCTTCCACGTCCAATGACGTCAATCGACAACTACCCGATCACGATTTGGTGACGTCACTCAACGAGCAAGTCACCGAAATAGCCGACAGACTGTCGTCTATAGCCGCTAGTGACGTGGACATTGTCGATCAAATGCATTCCTTCTCGACGAACGACGTTACCGGTCTGATATCGGTCGACGAGCAAGCGTACGGGTATTCGGGACCCAGGAACGAGCAGCTGAGCTGTATGCCGTCGACGAGCCACGGGTATCTCATACCCAACGCGATCAGCCACGAGCCGGCGGTCATGTCGTCGCTGTCCCACAACAACTCGGCGGTCTTCAATGACGAAACAAGCGAAGCAAACGACCCGCTGAACACTGATCTCCCGTTAATAATTCCAGAGAACATTGACGCCGATATCGTTAATACTAATATTTGTAAAGCGAACGCTAACCTAAGTATGTTACTAACAGAAGAGTTTAGACAGGACGAAAGCGCCGACGACAGTACTAGCTTTCATTCAGCCAAAATGACTTTAGATACAGAAGACGATAGAGTTAAGTTTATGTTGGGTTACGAAAGCGAACACGAGTCGCCGGTTGATTCGGGAGTCAGCACAGAGAACACTAGTCTAGACAGATCACCGGATTCGGATCAGAGTAAAGAAATCAAGGGTAGCCTCCAGAACCGGGTCCTGATACCCGAAGAAAGTTCCTTCGACACTGTTAATATTAATTACGCCGAAGAAGAAGGGCAGAAGAACGAAGCCTGCTCTTCGAATATCGACGTTAGGTTAAGCGATGAGAGTTCAGACTCGATTGAAGAGAGGCGAGTTTTACAAGAATGGGGAGCGAACGCTTCCGAAGTAGAATATAGTACAATAGAAGAAGTAATCACAGAACTGAGAAGACACAGGGAGAGCGATAAGAAAATTAGTTCTTTATTTGAAAACGAAGGACCATCACAGAGTAGTTCTAGAGTTAGAAAGAGTAGGAGTTCAGGGAAGAAGAGTAAAGGGAAGATTTGGACGTCCGGTGCTGTTAGGCTGAATAATCGCTCCAACCAGAGCCAGAGTCCCTTAAGACTGAATTTAGACCATTTCGTTGATGAGAGTGGCACATCCTGCGCTGGTTCGGAATGCGCTGATGATGAACAGATAGCTCTCGCGTTGCAGACTCAGGAGTTGGCGGCTCGACAACAAGCAAGGGGGAAATTCAAATCGAGCGAAGATCTAATACACCGTTTGTTCGTGTGCATCGCGGGGGTCGCGGATCAGCTGCAGACGAACTTCGCGGCCGACCTCAGGAACATCCTGAAGTCCGTCTTCCTGATGAACCAGTCGCCGGACACGACGGAGACGCCCGAACCTCCCGAGAAGAGCGACGAGAAATCGCCCACCATCGAATACGAACTGTCTGAGGACCAAGTTATACAGAATCAAGCTTCTCGATTTCAATTTACCTGGGTGCTCGGATTACGAAGTGTACGCTTCAGGCGTAGATTCAGAGCTAAAATATAA
Protein
MYDRVLNITSQIMDQVLGDERVARGFRVKFPEDVLQDNLAGQLWFGAECLAAGSSIMNREEESASMRPLAKALTRSLETVRSLLREQCLRPRGLALSQHDDMLHESLRIFDRLFAEFELCYVSAMVNVKTPQEFEAQQLICVLFSESLRRALKQNLLAQEQVDSYDPALMFAVPRLAIVSGLLIYSSGPLSINKPPEEMSVMFRPFRTLLNKIRSLLWTLDRRELLALERLLCTNEDITNLAALGLPSPLNSDTPEDSSCPYPDIEEFVSRFYTDYAHCRDLYAQSSSEPTITDADYLPDNIEVMTPIIDGLRRLTEFADTHDESSDHEKPRHSIDTASTDTFQTDYIDRSRKTSKTENSDLSSLRNLSTNGLMMFDPLVINAAASTSNDVNRQLPDHDLVTSLNEQVTEIADRLSSIAASDVDIVDQMHSFSTNDVTGLISVDEQAYGYSGPRNEQLSCMPSTSHGYLIPNAISHEPAVMSSLSHNNSAVFNDETSEANDPLNTDLPLIIPENIDADIVNTNICKANANLSMLLTEEFRQDESADDSTSFHSAKMTLDTEDDRVKFMLGYESEHESPVDSGVSTENTSLDRSPDSDQSKEIKGSLQNRVLIPEESSFDTVNINYAEEEGQKNEACSSNIDVRLSDESSDSIEERRVLQEWGANASEVEYSTIEEVITELRRHRESDKKISSLFENEGPSQSSSRVRKSRSSGKKSKGKIWTSGAVRLNNRSNQSQSPLRLNLDHFVDESGTSCAGSECADDEQIALALQTQELAARQQARGKFKSSEDLIHRLFVCIAGVADQLQTNFAADLRNILKSVFLMNQSPDTTETPEPPEKSDEKSPTIEYELSEDQVIQNQASRFQFTWVLGLRSVRFRRRFRAKI

Summary

Uniprot
H9IYG6   A0A1E1W3J9   A0A194QJW6   A0A2W1BPW5   A0A2A4IUQ5   A0A2H1WWT4   + More
Pubmed
19121390    26354079    28756777   
EMBL
BABH01020532    GDQN01009520    GDQN01001684    JAT81534.1    JAT89370.1    KQ458761    + More
KPJ05205.1    KZ149938    PZC77028.1    NWSH01007562    PCG62912.1    ODYU01011645    SOQ57520.1   
Proteomes
UP000005204    UP000053268    UP000218220   
PRIDE
H9IYG6   
Pfam
PF01363   FYVE
Interpro
IPR011011   Znf_FYVE_PHD        + More
IPR013083   Znf_RING/FYVE/PHD       
IPR017455   Znf_FYVE-rel       
IPR000306   Znf_FYVE       
SUPFAM
SSF57903   SSF57903       
Gene 3D
3.30.40.10    
ProteinModelPortal
H9IYG6   A0A1E1W3J9   A0A194QJW6   A0A2W1BPW5   A0A2A4IUQ5   A0A2H1WWT4   + More

Ontologies

KEGG
101744058    K17603 zinc finger FYVE domain-containing protein 1 | (RefSeq) lateral signaling target protein 2 ho
GO
GO:0046872  

Topology

Length:
884
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.33135
Exp number, first 60 AAs:
0.00331
Total prob of N-in:
0.01487
outside
1  -  884
 
 

Population Genetic Test Statistics

Pi
241.55943
Theta
165.316467
Tajima's D
1.464712
CLR
0.362671
CSRT
0.774211289435528
Interpretation
Uncertain
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