Silkworm Genome Informatics Database

Gene

KWMTBOMO15679

Annotation

PREDICTED:_lateral_signaling_target_protein_2_homolog_[Amyelois_transitella]

Location

Bomo_Chr26(+):6255849-6277444 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.45 Nuclear Reliability : 1.18

CDS

ATGAGGCTGCTATACAAAACTGGTCCGATGGAGTCGCTCAGAAAATGGTTTTACAAACCAAAGAGGGACGACCATTCACTCCTCGCGCAGTTCTTTTTCGCGGACGATGCTCTGAACATGGTCGCCGCAGAGCTAGACTCCTTCGACGGAAGGAAGGACCCAGACAGATGCTCAACCCTCGTCAATCAGCTACGACATGCACAGGAACGCTGGGACGCATGGGATTGTGTCGTGCGAGAATATTTCACACGAAAACTCTCATCATTCCGTAGGTAA

Protein

MRLLYKTGPMESLRKWFYKPKRDDHSLLAQFFFADDALNMVAAELDSFDGRKDPDRCSTLVNQLRHAQERWDAWDCVVREYFTRKLSSFRR

Uniprot

A0A1E1W3J9 H9IYG5 W4ZC06 T1G6X3 A0A0S7HGS3 A0A0S7HET8 + More
A0A0S7HEL4

Pubmed

19121390 23254933

EMBL

GDQN01009520 GDQN01001684 JAT81534.1 JAT89370.1 BABH01020528 BABH01020529 + More
BABH01020530 AAGJ04106095 AAGJ04106096 AAGJ04106097 AMQM01007248 AMQM01007249 KB097587 ESN93889.1 GBYX01441980 JAO39406.1 GBYX01441977 JAO39409.1 GBYX01441979 JAO39407.1

Proteomes

UP000005204 UP000007110 UP000015101

PRIDE

H9IYG5

Pfam

PF01363 FYVE

Interpro

IPR000306   Znf_FYVE        + More
IPR011011   Znf_FYVE_PHD
IPR013083   Znf_RING/FYVE/PHD
IPR017455   Znf_FYVE-rel

SUPFAM

SSF57903 SSF57903

Gene 3D

3.30.40.10

ProteinModelPortal

A0A1E1W3J9 H9IYG5 W4ZC06 T1G6X3 A0A0S7HGS3 A0A0S7HET8 + More
A0A0S7HEL4

KEGG

101744058 K17603 zinc finger FYVE domain-containing protein 1 | (RefSeq) lateral signaling target protein 2 ho

GO

GO:0046872 GO:0031901

Length:

91

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01192

Exp number, first 60 AAs:

0.01192

Total prob of N-in:

0.30991

outside

1 - 91

Pi

195.056474

Theta

185.714021

Tajima's D

0.178917

CLR

1.834674

CSRT

0.423428828558572

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics