SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15672
Pre Gene Modal
BGIBMGA002286
Annotation
PREDICTED:_uncharacterized_protein_LOC101737006_isoform_X1_[Bombyx_mori]
Location
Bomo_Chr26(-):5952286-5964849      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.185
 

Sequence

CDS
ATGGGACAAGGATCGCATGAATTAAGCAGTCTGAAAAATCTTTCAGAAGTCCGCTACACGATAGCAAAGAAGTTACAAACTACCATTATCCAAAACAGTACTGTTATACAAGATTCAACGTTAGATTTCCTAAAAACAATCGAAGTGGATCTGAAGGAGTACGAGGACAACTACACGGAGTGTATGAAGCATTTGAACAACAAGGAAAAGAAGACTTGGACGTTTTGGAATGCAATGTTTTACGCGGGAACTATTTATACGACTATAGAAGTTTCCGTGAATGGGCAGGCGGAAGGTGTTTTGAAGAAACAGTGTGTGGTAATGAGTGAGGAACGAAACGATAGAAAAAAACTTACATTGAAAATACCAACAATAAAAGCAGAATCCGAAGTTCAAACTGTTGAACAATTAGTTCCTAAAACGACAGATATAACATTGACCGAAATGGAATCGGGACAAGAAAACCAAGGCACGTCGATAAGAAAAAGAAGAAATTTATCAAAAAACAGGGGCCAAGCAGCTAGACAACGTGAAAAAACACCAGAACCCAGCAGAACTCCCGTACCTCATGAAGATACAACTACTTCAGACGATGAAGAAATGAAAGCACCTCCGAGTCCTAGAGAAATAGAAGCTGATGATACGTATGAAGAGATGAGGCGTCTTGTTCAAGAACAAGCAAACACGAAAGATCCTGTTTACGATTTAGACATGGAGAAGTTACTTGAAGAGAGAGCAATAGCAGCAAACGAAAGAAGGCGCAGAAGTATTTCACCGTTTGCATTACCGGACAAAGATGATTTGAATAAACTACAACGTAAAGGAAGCTTTATTGACCCTAGTAATAAGTTGCTATCTTCAAATTATATAGTAAGCCCAAAGGATGAAGACAAAGGAAGACGAGGATCCGTCGAAACTCCTAAGGAAATCTTTCTTTCATCAGGAAGCAGTTCACCAAAAATAGATAGTGATAGTCTACAGTCTGTGCCCACAACACCCAAGAAACTACAAGAAATTGTTTATCCAGATGACAAAATGTTTGAAGATATGTCCAAGAAACCAAAAACCCCGGTGAAAGCCGAAAATATATTTTCATTTGATGGTAAGCAGGGCAATGTGAGTACCAAGTCGTCTTCGCCTATCAGGTCAGAACTGCCATCTCCAAGCGAGACAGGCGCCAAAGTTGTTCAAGTCGAACGATCATCAAGCAAGAAGCTATTACAGGAGAAAAAGCCTGTTGTCGAAGTCAGAGAAAGAATCGTAAGAACTCCGAGTAGAAAAACATCAGCTGAAAATAAGCCAATCGTGGTAAAGCAAATACACAAACATGGTAAAGATGAACATGGCAAAGTCCCTCCAGTGAAACCTGCTCGGAGCAAATCAGTATCAAGATTAGGGAATAAAACTAGTGAGAGTGAAATGAGTGAAGATCAAGGAAACCAACGAAATCTTGCAGCTTCATCAAAACGTAGAGCTGTACCACCACCGCGACGGTTTGTAAAGCATTCACCAAGAGCTAACCGTTCGCAGTCAATACATAAAGTTGAAGACTTACGAGCAGACAAATCAGAAATAGGAATGAGTCAAACGAGTCGGGAAATAATGGAGTTAATGCAGAAAGCCAGAGCTAGAAGTCTATCGATCCCTAAAGATGACCCAAGATTACCGGTTGAATATAGAAAATTTAACAGAAATTTGAAAACCCCAAACAAAACGCCTTCAGAGACTCCTAAGAGTACTAGAGGAATTTCTTGTCCGAAAACAATTCAAATAATTAGTGACAAAGAGATACTCGCGGGACTTTATACAAAACAGAATGATAACTTAAGTAATGGTGGATATAGTAGACAAAGTTCTGGATATATAGACGCAAGTCAGTCTGAGGTAACTTCCAGTTGTTATTCATCTTCACCAAGTGGAAATGAATTCGATTTTGATTTGTCTGAACGGACTGCTGAACTAACTCGCAAGCTAAATATACTGAGCCAAGAAGTAGACCAAAGACAAGATAAGAACAATATTATTTTATCACGAGATGACAACTATTTTAGGGAAAACGAAATCGAACAAAGGTCAGGTCTAAGAAAAAGATCGCTGGTTGGCACAAAAACCGATGAAAAGAAAGATAAATCTAGAATTACACAACAGAGGAAGAGTAAACAAAAATCGTCACCTGATAGTAAAAAAACGAGATCAAAGTGGAATGTGATCGGGAATTGGCGGCAGTTCAAACACGAGCAAAGAATTGAATATGAAAAGATAAAATTGTTGAGGAATAGGTGTTTCTGTGACATGCTTTTGGTAGTTATGCTGTGTGGTTCAGGTGCGATGATGTTCAGGTATTTTGAGGCATCGTTTGAGAATACCTTTAAATGTGGAAGTCGGAGTGTTAAAAGAGACTTCCTCGAAAGTCTGTGGCGGGGCACTCAGTATTTACGTGAAGACGACTGGAAATCTATGGCACGAAAGAAATTATATGAATTCGAAAATCAGTTGCATACCGCGTACGAAGTAGGTGTTACGTCTTACAGTGGGCAGAGGTCTTGGAATTTCATGAACTCTTTCATCTACTGCTTTACGTTAATGACAACGATTGGTTACGGTCACATAGCTCCGAAGACGAGTTACGGTCGGGCAGCGACTATTGTATACGCCATCATCGGAATTCCACTATTCCTGATTGTCCTCGCCGACTTCGGCAAACTGTTCACGAGGATTATCAAATTCTTCTGGTCATTCATTAGAAGATTCTACTACACCAGAAGCTGCAGGAAAGTTAGGAGAACGGTGCCAGTACAAGAAGTTATGAAAGGTCTCAACATAGTTTACGACGTGGTTCGACGTCCGTCTCAAATATTTTCCGAAGAAGAAATTTTACCAGACCAGCCACCGCCAATCGAAAGAAGATCTAGTGATGTCCCCCCACCACTACCACCAAAGCCTGGAACAACTCGAGATCCTGAAAATGAAACTGAACCAGAAACACCAGCACCATCAGTTTTCGAAATAGACGATGAATTTAATTTACCTATATCAGTTGCCATTATCATTCTAATTATTTACATAATTATGGGCGCCACCATATACTATACTTGGGAAACCTGGAGTTTCTTTGAATCATTCTATTTTATCTTCATATCGATGTCGACTATTGGTCTCGGAGATCTAGTTCCCGATAACCCAATGTTCATGATGGCTTCCATTTTGTACCTTATCTTTGGATTGGCTTTGACATCAATGTGTATTAACGTAGTACAAGTAAAGCTATCTGACACGTTCAAACAAGCTAGTGCCAAATTAGGGGCTACGATAGGTCTGAAAGTAGCTGAAGAAGATGGTAGTTTGGTCCCCATTACTCCTCCTCCGACAGAAATTGTACCAGTACATAAATCTAAAACTAAAATTGAGGACAACTGTAAAGGCGATGATCAAAATGACGATAAGAATAGATAA
Protein
MGQGSHELSSLKNLSEVRYTIAKKLQTTIIQNSTVIQDSTLDFLKTIEVDLKEYEDNYTECMKHLNNKEKKTWTFWNAMFYAGTIYTTIEVSVNGQAEGVLKKQCVVMSEERNDRKKLTLKIPTIKAESEVQTVEQLVPKTTDITLTEMESGQENQGTSIRKRRNLSKNRGQAARQREKTPEPSRTPVPHEDTTTSDDEEMKAPPSPREIEADDTYEEMRRLVQEQANTKDPVYDLDMEKLLEERAIAANERRRRSISPFALPDKDDLNKLQRKGSFIDPSNKLLSSNYIVSPKDEDKGRRGSVETPKEIFLSSGSSSPKIDSDSLQSVPTTPKKLQEIVYPDDKMFEDMSKKPKTPVKAENIFSFDGKQGNVSTKSSSPIRSELPSPSETGAKVVQVERSSSKKLLQEKKPVVEVRERIVRTPSRKTSAENKPIVVKQIHKHGKDEHGKVPPVKPARSKSVSRLGNKTSESEMSEDQGNQRNLAASSKRRAVPPPRRFVKHSPRANRSQSIHKVEDLRADKSEIGMSQTSREIMELMQKARARSLSIPKDDPRLPVEYRKFNRNLKTPNKTPSETPKSTRGISCPKTIQIISDKEILAGLYTKQNDNLSNGGYSRQSSGYIDASQSEVTSSCYSSSPSGNEFDFDLSERTAELTRKLNILSQEVDQRQDKNNIILSRDDNYFRENEIEQRSGLRKRSLVGTKTDEKKDKSRITQQRKSKQKSSPDSKKTRSKWNVIGNWRQFKHEQRIEYEKIKLLRNRCFCDMLLVVMLCGSGAMMFRYFEASFENTFKCGSRSVKRDFLESLWRGTQYLREDDWKSMARKKLYEFENQLHTAYEVGVTSYSGQRSWNFMNSFIYCFTLMTTIGYGHIAPKTSYGRAATIVYAIIGIPLFLIVLADFGKLFTRIIKFFWSFIRRFYYTRSCRKVRRTVPVQEVMKGLNIVYDVVRRPSQIFSEEEILPDQPPPIERRSSDVPPPLPPKPGTTRDPENETEPETPAPSVFEIDDEFNLPISVAIIILIIYIIMGATIYYTWETWSFFESFYFIFISMSTIGLGDLVPDNPMFMMASILYLIFGLALTSMCINVVQVKLSDTFKQASAKLGATIGLKVAEEDGSLVPITPPPTEIVPVHKSKTKIEDNCKGDDQNDDKNR

Summary

Similarity
Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.
Uniprot
H9IYF2   A0A2W1BWG7   A0A2H1W322   A0A0N1IAB1   A0A2A4J6T4   A0A194QNY7   + More
A0A0L7LG39  
Pubmed
19121390    28756777    26354079    26227816   
EMBL
BABH01020495    KZ149938    PZC77016.1    ODYU01005744    SOQ46904.1    KQ459941    + More
KPJ19178.1    NWSH01002997    PCG67132.1    KQ458761    KPJ05196.1    JTDY01001339    KOB74146.1   
Proteomes
UP000005204    UP000053240    UP000218220    UP000053268    UP000037510   
PRIDE
H9IYF2   
Pfam
PF07885   Ion_trans_2
Interpro
IPR003280   2pore_dom_K_chnl        + More
IPR013099   K_chnl_dom       
ProteinModelPortal
H9IYF2   A0A2W1BWG7   A0A2H1W322   A0A0N1IAB1   A0A2A4J6T4   A0A194QNY7   + More
A0A0L7LG39  
PDB
3UKM     E-value=6.53836e-11,     Score=167

Ontologies

KEGG
101737006    K20007 potassium channel subfamily K member 18 | (RefSeq) potassium channel subfamily K member 18
GO
GO:0005267   GO:0016021   GO:0016020   GO:0004983   GO:0005634   GO:0006270   GO:0042555   GO:0003707   GO:0006281   GO:0006259   GO:0071805  

Topology

Length:
1150
Number of predicted TMHs:
5
Exp number of AAs in TMHs:
110.82003
Exp number, first 60 AAs:
0
Total prob of N-in:
0.04409
outside
1  -  764
TMhelix
765  -  782
inside
783  -  848
TMhelix
849  -  871
outside
872  -  880
TMhelix
881  -  903
inside
904  -  1009
TMhelix
1010  -  1032
outside
1033  -  1062
TMhelix
1063  -  1085
inside
1086  -  1150
 
 

Population Genetic Test Statistics

Pi
181.54898
Theta
198.293475
Tajima's D
0.705081
CLR
0.314879
CSRT
0.573221338933053
Interpretation
Uncertain
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