SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15669
Annotation
gag-like_protein_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.7
 

Sequence

CDS
ATGAGTGACACCAACGCTGCGCTATTCATGAAGTTCGTCCGCGACGTCTGTCCGGACATAATCGCAAGGTTCGAAGTTTACAAGGCCGGCCTTGACGCGCCGGCACTCCGCGACTCTCCGTTGTCGCCCCCCGCGCCGGTACCTCGCGACTCGCCGATGTCGCCCCCCACCCCCGCGCCTGCGTCGATCGCGTCTTGCGCGGCATCAAGCTCCGGCTCCGACTCCGAGTCGGAAATGGAGTACGAGTCCGCCGCGAGTCCCCAACCGGGAACCTCGGAAGGGTTCACCACCGTCGCGCGCGGGAAAAAACGCGCCCGGGCCGTGGAACCGTCCGCGGCGCCGAAACAGCCAAAGGCCGCGAACGCGTCGCGTCCTAAAGTCGTGGCACAAAACGTCACCGTCATCCATGCGCGTAACATCGCGCACGGTATACAGATAAAAACGGCCTCACCGGACGACCACAGGGCGCTGACAGCCCACCTCCGAAAGGAACGCATAAGCTTCCACACTTATGCGCTCCAGGAGGATCGCGAGCTCCGCGTAGTAATACGCGGAGTACCGAAGGAGCTCGACGTCGAGCTGGTCAAGGAGGACCTCATCGGGCAGGCGTACCCGATTGTAAGCGTGCACCGAATGCACAGCGGGCGCGATAAATTCGCGTATAATATGGTTCTCGTCGCGTTAGAACCAACCGCCGAAGGCAAACGGATTGCCTCAAGCCTCCGCACCGTTTGCGGCTTATCCGGGGTCACCGTCGAGGCCCCATATAGAAAAGGCACTCCCGGGCAGTGCCACCGCTGCCAGCTTTACGGCCACTCCGCGCGCAACTGCCACGCGCGTCCACGGTGCGTAAAGTGCCTCGGTGACCACGCGACAGCCGACTGTTCGCGGGTCAAAGAGACCGCGACCGAACCTCCGAGCTGTGTGCTCTGCCAGAAGCAGGGCCACACAGCCAACTACCGCGGATGCCCCAAGGCCCCGCGGAAGCGTCTGGCCAACGCGCCTCCAAAAACCGTCGGCCCAAAGACTTCGGCGCCCCGTGCGCCGAAGCCTGCCTTCGTGCCGGCACCGGTGCCCACCGTCTCCGCGTGGGCAAAACCGCTGCCGCTCACGCTGGCAGGGAAACCACCGGCACCCCAGCCCCTGCTCGCGCCGCGCCCCGCCCCCGCGCCCGGTCCCGCGCCTCGCCCCGGCCCCGCCCGGCCAGCCGTTAACGACTTTTCAATCGTGCGTGATTATATCGCCGCGATAAATATAGATCGCATGCGCTCGTTCGCCGACGCCATGCGCAGGGCAGTCACGGCCGATGACCGCCTATACGCGACGTTCGACCATATGGACGTCATCGAGCCCGTCCAGCGTACGCTGGCTTGA
Protein
MSDTNAALFMKFVRDVCPDIIARFEVYKAGLDAPALRDSPLSPPAPVPRDSPMSPPTPAPASIASCAASSSGSDSESEMEYESAASPQPGTSEGFTTVARGKKRARAVEPSAAPKQPKAANASRPKVVAQNVTVIHARNIAHGIQIKTASPDDHRALTAHLRKERISFHTYALQEDRELRVVIRGVPKELDVELVKEDLIGQAYPIVSVHRMHSGRDKFAYNMVLVALEPTAEGKRIASSLRTVCGLSGVTVEAPYRKGTPGQCHRCQLYGHSARNCHARPRCVKCLGDHATADCSRVKETATEPPSCVLCQKQGHTANYRGCPKAPRKRLANAPPKTVGPKTSAPRAPKPAFVPAPVPTVSAWAKPLPLTLAGKPPAPQPLLAPRPAPAPGPAPRPGPARPAVNDFSIVRDYIAAINIDRMRSFADAMRRAVTADDRLYATFDHMDVIEPVQRTLA

Summary

Pfam
PF07530   PRE_C2HC
Interpro
IPR006579   Pre_C2HC_dom       
ProteinModelPortal

Ontologies

GO

Topology

Length:
457
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00025
Exp number, first 60 AAs:
0.00013
Total prob of N-in:
0.00270
outside
1  -  457
 
 

Population Genetic Test Statistics

Pi
145.78148
Theta
18.451688
Tajima's D
1.528928
CLR
0
CSRT
0.80145992700365
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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