Gene

KWMTBOMO15664  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002288

Annotation

C-type_lectin_21_precursor_[Bombyx_mori]

Location

Bomo_Chr26(+):5505667-5508541      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.647 Extracellular   Reliability : 1.151

CDS

ATGCGGGATATCAACGGCTGGTTGAAGCTTCAAGAGATCCCAGCTACCTGGCAGGAGGCTCGATTGAGATGTCATCTTGAAGGGTCCGTTTTGGCATCTCCTCTGGACGATGCGTTGAAGAGCGGCATGCTATCTCTAATAAAGAACAAGAAGACTTCATGTGGTATATTCACCGGCATCCATGCGACATTTTCTAAAGGAGACTACCGTTCTGTTGAAGGTGTCCCATTGGCGAAAATTCCTCACGATTGGGCGGATTATGAACCAGATAATGCTGGAGGTGACGAAAACTGTATCCTCATGAACCCTGATGGAAACTTCGCCGATGTTAATTGCACTGAAACGTTCCAATACGTTTGCTATAAGAAAAAGACTTCGACTATTGCTATGGCTTCTTGTGGCAGTGTTGATAGCGAATATGTTCTCAGCAAAGACACTGGTAATTGTTACAAGTTCCACAAAGTTCCCCGTACCTGGTCGCGTGCCTACATGGCCTGTTCAGCTGAAGGCGGATACCTCACGATTATTAACAACGAGAAGGAGGCCGTGTTCCTAAGGGACCTTTTCGTGAAGAACCCTGCCGTTCACATGATCGGAAGTTTCTGGAAAGACGTTGCCTTCATTGGCTTCCACGACTGGAATGAGCGCGGGGAATGGTTAACGATCAATGGTGAGAAATTACAAGAGGCCGGTTACGAGAAATGGTCTGGCGGCGAGCCTAGTAACGCGACGACTGGTGAATATTGCGGCTCTATCTACCGCTCGGCTCTACTCAACGACCTGTGGTGCGAAAAGCCGGCACCGTTTATCTGCGAGAAGGAACCTCGCAGCTTACTCCGAGAGCACGACGACAAATGA

Protein

MRDINGWLKLQEIPATWQEARLRCHLEGSVLASPLDDALKSGMLSLIKNKKTSCGIFTGIHATFSKGDYRSVEGVPLAKIPHDWADYEPDNAGGDENCILMNPDGNFADVNCTETFQYVCYKKKTSTIAMASCGSVDSEYVLSKDTGNCYKFHKVPRTWSRAYMACSAEGGYLTIINNEKEAVFLRDLFVKNPAVHMIGSFWKDVAFIGFHDWNERGEWLTINGEKLQEAGYEKWSGGEPSNATTGEYCGSIYRSALLNDLWCEKPAPFICEKEPRSLLREHDDK

Uniprot

O97363   H9IYF4   D2X2F6   H9IYF5   A0A194QAQ3   A0A0N1IPT5   + More
A0A3S2P588   A0A096ZGV0   Q9NBV9   G5CJE6   C0L7M0   C0L7M1   A0A3S2NP58   A0A2W1BVD9   A0A2A4IYF0   A0A2A4J280   A0A2H1WK53   Q19AB1   A0A2W1BYL2   I1VR05   A0A2W1BZP3   A0A212FF49   A0A173M1W5   A0A1E1WP12   A0A096ZGV4   A0A3S2L865   A0A0N1PJ18   A0A2A4J242   A0A2A4J3T7   A0A2W1BVG4   A0A1E1WQ86   A0A2W1BTF0   A0A2W1C0J5   B7SVM1   A0A0L7LUC3   R9UPV0   A0A0D3M5W6   O96359   A0A194QAQ8   A0A2Z5WQ31   Q5MGF0   A0A3S2TGZ3   A0A2A4IWU7   A0A0L7KKI4   A0A0L7KUN5   A0A1E1W152   A0A3S2NEY7   A0A2W1BTE2   A0A2A4J4S6   Q5UAW8   A0A0L7LBS8   Q5UAW7   A0A219YXH0   A0A2A4J2P8   A0A219YXH1   A0A3S2LAT9   A0A0L7KS66   A0A219YXK5   Q5MGG4   A0A219YXH2   B1A5Z5   A0A3G1HH34   A0A3S2NK24   A0A219YXG9   A0A2W1BF95   I1VR07   A0A219YXH4   A0A1C9EGM6   A0A219YXI5   A0A0L7LT05   A0A219YXH3   A0A096ZGV2   A0A2A4K927   A0A219YXI1   A0A2W1BDY0   A0A219YXG7   A0A219YXG8   A0A219YXH5   A0A2H1VQU1   A0A3G1HH41   A0A3G1HH66   A0A219YXI4   A0A219YXI8   A0A3S2TBA6   A0A194QMK1   A0A219YXH8   A0A3G1HH42   A0A219YXH6   I1VR06   I4DJJ2   A0A2W1B2K8   A0A219YXL1   A0A194PEZ5   S4PJZ4  

Pubmed

9310381    9989592    19121390    26354079    10954704    28756777    + More
17568670    22516747    22118469    19033442    26227816    9818384    28870445    16023793    15763465    16640722    22651552    23622113   

EMBL

AJ011573    CAB38429.1    BABH01020449    GQ487489    ADB12587.1    BABH01020450    + More
KQ459232    KPJ02552.1    KQ460044    KPJ18317.1    RSAL01000019    RVE52735.1    KF752419    AIR95998.1    AF242202    AAF91316.2    JN133501    AEO52696.1    FJ666210    ACN41858.1    FJ666211    ACN41859.1    RVE52734.1    KZ149926    PZC77594.1    NWSH01005098    PCG64438.1    NWSH01003559    PCG66111.1    ODYU01009180    SOQ53429.1    DQ533877    ABF83203.1    KZ149905    PZC78327.1    JQ269656    AFI47451.1    PZC78330.1    AGBW02008849    OWR52366.1    LC150882    BAV01248.1    GDQN01002397    JAT88657.1    KF752421    AIR96000.1    RSAL01000824    RVE41129.1    KPJ18324.1    NWSH01003594    PCG66071.1    PCG66072.1    PZC78331.1    GDQN01002063    JAT88991.1    PZC78329.1    PZC77593.1    EU770390    ACI32834.1    JTDY01000107    KOB78821.1    KC733761    AGN70857.1    KF285999    AIC33761.1    AF023275    AAD09286.1    KPJ02557.1    LC209794    BBC20960.1    AY829836    AAV91450.1    RSAL01000150    RVE45770.1    PCG64437.1    JTDY01009247    KOB63853.1    JTDY01005614    KOB66830.1    GDQN01010324    JAT80730.1    RVE45766.1    PZC78328.1    NWSH01002983    PCG67147.1    AY768811    AAV41236.1    JTDY01001800    KOB72850.1    AY768812    AAV41237.2    KX550127    AQY54444.1    NWSH01003419    PCG66335.1    KX550126    AQY54443.1    RSAL01000062    RVE49558.1    JTDY01006582    KOB65869.1    KX550129    AQY54446.1    AY829822    AAV91436.1    KX550125    AQY54442.1    EU426550    ABZ81710.1    KY111304    KY111307    AQX37240.1    AQX37243.1    RVE49559.1    KX550120    AQY54437.1    KZ150306    PZC71506.1    JQ269658    AFI47453.1    KX550130    AQY54447.1    KX778610    AON96650.1    KX550141    AQY54458.1    JTDY01000152    KOB78577.1    KX550128    AQY54445.1    KF752420    AIR95999.1    NWSH01000031    PCG80506.1    KX550136    AQY54453.1    PZC71507.1    KX550123    AQY54440.1    KX550122    AQY54439.1    KX550131    AQY54448.1    ODYU01003868    SOQ43168.1    KY111311    AQX37247.1    KY111312    AQX37248.1    KX550138    AQY54455.1    KX550142    AQY54459.1    RSAL01001098    RVE40947.1    KQ461198    KPJ06185.1    KX550124    AQY54441.1    KY111310    AQX37246.1    KX550132    AQY54449.1    JQ269657    AFI47452.1    AK401460    BAM18082.1    KZ150418    PZC70939.1    KX550139    AQY54456.1    KQ459606    KPI91593.1    GAIX01004755    JAA87805.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000283053    UP000218220    UP000007151    + More
UP000037510   

PRIDE

O97363    H9IYF4    D2X2F6    H9IYF5   

Pfam

PF00059   Lectin_C        + More
PF00293   NUDIX

Interpro

IPR016187   CTDL_fold        + More
IPR018378   C-type_lectin_CS       
IPR001304   C-type_lectin-like       
IPR016186   C-type_lectin-like/link_sf       
IPR015797   NUDIX_hydrolase-like_dom_sf       
IPR003563   OxG-triPHTase       
IPR000086   NUDIX_hydrolase_dom       

SUPFAM

SSF56436   SSF56436        + More
SSF55811   SSF55811       

Gene 3D

3.10.100.10    

ProteinModelPortal

O97363   H9IYF4   D2X2F6   H9IYF5   A0A194QAQ3   A0A0N1IPT5   + More
A0A3S2P588   A0A096ZGV0   Q9NBV9   G5CJE6   C0L7M0   C0L7M1   A0A3S2NP58   A0A2W1BVD9   A0A2A4IYF0   A0A2A4J280   A0A2H1WK53   Q19AB1   A0A2W1BYL2   I1VR05   A0A2W1BZP3   A0A212FF49   A0A173M1W5   A0A1E1WP12   A0A096ZGV4   A0A3S2L865   A0A0N1PJ18   A0A2A4J242   A0A2A4J3T7   A0A2W1BVG4   A0A1E1WQ86   A0A2W1BTF0   A0A2W1C0J5   B7SVM1   A0A0L7LUC3   R9UPV0   A0A0D3M5W6   O96359   A0A194QAQ8   A0A2Z5WQ31   Q5MGF0   A0A3S2TGZ3   A0A2A4IWU7   A0A0L7KKI4   A0A0L7KUN5   A0A1E1W152   A0A3S2NEY7   A0A2W1BTE2   A0A2A4J4S6   Q5UAW8   A0A0L7LBS8   Q5UAW7   A0A219YXH0   A0A2A4J2P8   A0A219YXH1   A0A3S2LAT9   A0A0L7KS66   A0A219YXK5   Q5MGG4   A0A219YXH2   B1A5Z5   A0A3G1HH34   A0A3S2NK24   A0A219YXG9   A0A2W1BF95   I1VR07   A0A219YXH4   A0A1C9EGM6   A0A219YXI5   A0A0L7LT05   A0A219YXH3   A0A096ZGV2   A0A2A4K927   A0A219YXI1   A0A2W1BDY0   A0A219YXG7   A0A219YXG8   A0A219YXH5   A0A2H1VQU1   A0A3G1HH41   A0A3G1HH66   A0A219YXI4   A0A219YXI8   A0A3S2TBA6   A0A194QMK1   A0A219YXH8   A0A3G1HH42   A0A219YXH6   I1VR06   I4DJJ2   A0A2W1B2K8   A0A219YXL1   A0A194PEZ5   S4PJZ4  

PDB

5G6U     E-value=3.76971e-08,     Score=137

KEGG

101736606    no KO assigned | (RefSeq) macrophage mannose receptor 1-like

GO

GO:0030246   GO:0006281   GO:0008413  

Length:

285

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01046

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.03237

outside

1  -  285

 

 

Pi

224.692914

Theta

195.891302

Tajima's D

0.354184

CLR

0.014686

CSRT

0.47637618119094

Interpretation

Uncertain