SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15645
Pre Gene Modal
BGIBMGA010696
Annotation
PREDICTED:_uncharacterized_protein_LOC105202492_[Solenopsis_invicta]
Transcription factor
Location in the cell
Nuclear   Reliability : 3.971
 

Sequence

CDS
ATGCCTAATAAATACAAGAGAAAGGCAGTGGCTGTGAGAGGAAATTGGTCGGAAGAATCACTAAAAGCAGCTATTAATGCTGTGAAAAATGATGGATTATCCGTACGCGCGGCTAGTCTCCAGTATCAGATACCTAGAAAGGCATTAGAACGAAAGCTAAAGAAGAATGACGACAAGAAAGGCCCTATGGGACCACCTACTTTATTCGGAGAACAAAATGAGAAAAAATTGGTTGCTCATATTAAAACAATATTTAACAAAGACAATCAGAAAGCAGGATATGACTGGTTGCAGTTGTTCTTGAGCAGAAATACTGATATTGCACTTAGGAAGTCAGAAGGAGTTTCTTTGGCTAGAGTCAATGGCATGAATAGATCAGAAGTTAATGCATATTTTAAATTGCTTGAAAGCGTCCTTATCCATGAGAATGAGATGCTACCTCCTAACTGCGTATTTAACATGGATGAATCTGGCCTACAGTTAAATAGTCGTCCGGGGCACGTGCTTGCTCAAAAAGGTTCTAAAGCTGTTTCCACAGTGACATCAACTGAAAAAGGGGAGACAATAACCATTATAGCCTGCTGCAATGCAGAAGGCACGTTCTTGCCACCTGCCTGTATCATGAAAGGAAAAAATAAAAAGCCTGAGTTTGAAGACGGAATGCCTCCAGGATCAAAACTATTCATGTCACAAAAATCAGCATATATAATATCAGAAATATTTTTAGAATGGTTAAAAACACACTTTGTTCCAAGGAAACCAGCCGGGAAAGTTGTCCTTCTGTTAGACGGCCACTCAACTCATTCCAATTCTGTGGAAATGTTGGAATATGCCATTCAGAATGACATTATTTTGGTATCAATGCCTAGTCACACGTCTCATTATCTCCAGCCCTTAGATCGTTCTGTTTTTAAACCACTAAAACATCACTTTTATGAACAGTCTAGACTTTGGTTAATCCACAACCCAGGACGTCGAATATCGAGACTTTCTTTCGGAGTTTTGCTTAGCAAGGCTTGGGGAAAGGCAGCATCGTCGGAAAATGCAATTGCTGGTTTTAAAGCGACTGGAGTGTATCTTCTTAACCCAGAAGTGGTGCCAGATTATGCGTTTTTTCAAGAATCTACAGGTGACTCGACGAATACTTCTGTTACACAAGTGCTTTCACATTGTAAATCTGCTGTGGACAATGAGATACCAGGTTGTTCTTATGAACCAATAATAGATGAAACAAAATATAGCTCTGAAACCGTGTCTACAAAATCCTCCGTTAAAACTGCCACGATGTCTAATATGTCTCACCCGAGTACTCCGAAAGAAGCTTCGTTCAGTAAGAATCCAGACTACACCCCATCTCGAATTTTACAGGATATATCACCTATTCCACAAAAACTGATTCAGGTGCGTAAACGAGCAAAGCAAGTTGGAACACTATTGACTTCGGAAGAACACATCAAAACTAGAAAAAATGCTGCAGAAAAAAAGGAAAACGTAAAAAAATGTGTCAAAACAAAGCAGGAAAAAAAAACTGTTCTATGTATAAAAAGAAAAGCCATTCGAAGACTATCTGAGAATAGTGACGAAATTCCATTAAAAATATTGTCAGTTAAGAATGAGAAAAGAAAGCTAGATGAAAAGGATAACTGTCGTGGGTGTGGTGAAAATTACTACGAAACACTTCTCATTGAAGACTGGCTTCAATGTACAGTCTGTCAGTATTGGGTTCACGAACACTGCACTGAATTTGAAACGACGTGCTCCAGATGTGGCGAAGAGGAGAAAACAAGACTTAAAAATAGAAAATGA
Protein
MPNKYKRKAVAVRGNWSEESLKAAINAVKNDGLSVRAASLQYQIPRKALERKLKKNDDKKGPMGPPTLFGEQNEKKLVAHIKTIFNKDNQKAGYDWLQLFLSRNTDIALRKSEGVSLARVNGMNRSEVNAYFKLLESVLIHENEMLPPNCVFNMDESGLQLNSRPGHVLAQKGSKAVSTVTSTEKGETITIIACCNAEGTFLPPACIMKGKNKKPEFEDGMPPGSKLFMSQKSAYIISEIFLEWLKTHFVPRKPAGKVVLLLDGHSTHSNSVEMLEYAIQNDIILVSMPSHTSHYLQPLDRSVFKPLKHHFYEQSRLWLIHNPGRRISRLSFGVLLSKAWGKAASSENAIAGFKATGVYLLNPEVVPDYAFFQESTGDSTNTSVTQVLSHCKSAVDNEIPGCSYEPIIDETKYSSETVSTKSSVKTATMSNMSHPSTPKEASFSKNPDYTPSRILQDISPIPQKLIQVRKRAKQVGTLLTSEEHIKTRKNAAEKKENVKKCVKTKQEKKTVLCIKRKAIRRLSENSDEIPLKILSVKNEKRKLDEKDNCRGCGENYYETLLIEDWLQCTVCQYWVHEHCTEFETTCSRCGEEEKTRLKNRK

Summary

Pfam
PF03184   DDE_1        + More
PF05225   HTH_psq
PF03221   HTH_Tnp_Tc5
PF02338   OTU
Interpro
IPR009057   Homeobox-like_sf        + More
IPR007889   HTH_Psq       
IPR002219   PE/DAG-bd       
IPR004875   DDE_SF_endonuclease_dom       
IPR006600   HTH_CenpB_DNA-bd_dom       
IPR011011   Znf_FYVE_PHD       
IPR001965   Znf_PHD       
IPR013083   Znf_RING/FYVE/PHD       
IPR019786   Zinc_finger_PHD-type_CS       
IPR003323   OTU_dom       
SUPFAM
SSF46689   SSF46689        + More
SSF57903   SSF57903       
Gene 3D

Ontologies

Topology

Subcellular location
Nucleus  
Length:
601
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00541999999999999
Exp number, first 60 AAs:
0.00022
Total prob of N-in:
0.01337
outside
1  -  601
 
 

Population Genetic Test Statistics

Pi
581.848816
Theta
228.310752
Tajima's D
4.902524
CLR
0
CSRT
0.999950002499875
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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