Silkworm Genome Informatics Database

Gene

KWMTBOMO15644

Pre Gene Modal

BGIBMGA010695

Annotation

Muscle_segmentation_homeobox_[Papilio_xuthus]

Location

Bomo_Chr26(+):5141527-5143837 View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear Reliability : 4.232

CDS

ATGGAGACTAAATGTCAATTAGCTGGCTCTCCGAGTGGACCACCGGTAGTACGATGTCAGCTTCGCAAGCACAAGCCGAACCGCAAACCTCGGACGCCGTTCACGACCCAACAGCTCCTAGCCTTGGAGAAGAAATTTAGGGAGAAACAATACTTGAGCATCGCTGAGAGAGCTGAGTTCTCGTCGTCTCTACGGCTCACAGAAACTCAGGTGAAAATTTGGTTTCAAAATCGAAGAGCCAAAGCGAAACGACTCCAAGAAGCCGAGATAGAAAAACTAAGACTATCCGCCCGACCACTTCTGCCGCCCTCCTTCGCGTTATTCGGTAGCGGGGGTGCTCCTCCACTATTCGCTGCCATGGCCGCCGCCTCCAGACCCCAACTGAGCTTCCTAGGCGGCCCTCCGAGCCATCAACACGCCATCAACATGAATATATTGAACTCTCTACAGCCGCATTGA

Protein

METKCQLAGSPSGPPVVRCQLRKHKPNRKPRTPFTTQQLLALEKKFREKQYLSIAERAEFSSSLRLTETQVKIWFQNRRAKAKRLQEAEIEKLRLSARPLLPPSFALFGSGGAPPLFAAMAAASRPQLSFLGGPPSHQHAINMNILNSLQPH

Uniprot

A0A194QI93 A0A2H1WYZ3 A0A2A4K3L2 H9JME2 A0A0N1IGJ2 A0A212EHY0 + More
D6WZZ2 Q58Y76

Pubmed

26354079 19121390 22118469 18362917 19820115 15733674 + More

EMBL

KQ459193 KPJ03171.1 ODYU01012136 SOQ58271.1 NWSH01000220 PCG78260.1 + More
BABH01040045 KQ459941 KPJ19160.1 AGBW02014769 OWR41084.1 KQ971372 EFA10500.1 AY695258 AAW21975.1

Proteomes

UP000053268 UP000218220 UP000005204 UP000053240 UP000007151 UP000007266 + More

PRIDE

H9JME2

Pfam

PF00046 Homeodomain

Interpro

IPR001356   Homeobox_dom        + More
IPR017970   Homeobox_CS
IPR020479   Homeobox_metazoa
IPR009057   Homeobox-like_sf

SUPFAM

SSF46689 SSF46689

CDD

cd00086 homeodomain

ProteinModelPortal

A0A194QI93 A0A2H1WYZ3 A0A2A4K3L2 H9JME2 A0A0N1IGJ2 A0A212EHY0 + More
D6WZZ2 Q58Y76

PDB

1IG7 E-value=9.91419e-19, Score=223

KEGG

101736529 K09341 homeobox protein MSX | (RefSeq) homeobox protein MSX-2-like

GO

GO:0043565 GO:0006355 GO:0005634 GO:0048598 GO:0000977 GO:0003677 GO:0016020 GO:0020037 GO:0030117 GO:0006418 GO:0003707 GO:0006281 GO:0006259

Subcellular location

Nucleus

Length:

152

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

4.37105

Exp number, first 60 AAs:

0

Total prob of N-in:

0.33135

outside

1 - 152

Pi

212.074428

Theta

159.650922

Tajima's D

1.032551

CLR

29.753786

CSRT

0.670016499175041

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree