SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15642
Annotation
reverse_transcriptase_[Bombyx_mori]
Full name
Probable RNA-directed DNA polymerase from transposon BS       + More
RNA-directed DNA polymerase from mobile element jockey      
Alternative Name
Reverse transcriptase
Location in the cell
Nuclear   Reliability : 2.313
 

Sequence

CDS
ATGGTTAGGAACGACAGGCTCACTGCTCGTGGTGGTGGTACCGTCATTTACTATAGAAGAGCCCTGCATTGCGTCCCGCTCGATCCTCCCGCGCTCGCTAACATCGAAGCATCAGTGTGTCGAATCTCACTGACGGGTCACGCGCCGATCGTTATCGCGTCCGTTTATCTTCCTCCGGATAAGATCGTTCTAAGCAGTGATATCGAGGCGCTACTCGGCATGGGAAGCTCTGTCATTCTGGCGGGCGACCTAAATTGTAAACACATCAGGTGGAACTCACACACCACAACCCCTAATGGCAGGCGGCTCGACGCGTTAGTCGATGATCTCGCCTTCGATATCATCGCTCCGCTAACCCCGACTCACTACCCGCTAAATATCGCGCATCGCCCGGATATACTCGACATAGCGTTATTAAAAAACGTAACTCTGCGCTTACACTCGATCGAAGTAGTTTCAGAGTTAGATTCAGACCACCGTCCTGTCATTATGAAGCTCGGTCGCGCTCCCGATTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGGCATTAGCCTGGCTGAATCTGATCCACCATCGCTCCCGTTTAGCCCGGACTCTACCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCGTAACGTCACATATCACCTCGACATTAGATAGGTCATCGAAGCAAGTTGTGGCGGAGGACTTCCTTCACCGCTTCGAATTGCCCGACGATATTAGGGAGCTCCTTAGAGCTAAGAACGCCTCGATCCGTGCCTACGATAGGTATCCTACCGCGGAAAATCGTATTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCACCGAAGTCCGAGATGCCAGATGGTCTAATTTCTTAGAAGGACTCGCGCCCTCCCAAAGGTCTTACTACCGCTTAGCTCGTGCTCTCAAATCGGATACGGTAGTAACTATGCCCCCCCTCGTAGGCCCCTCAGGCCGACTCGCGGCGTTCGATGATGACGAAAAAGCAGAGCTGCTGGCTGATACATTGCAAACCCAGTGCACGCCCAGCACTCAATCTGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGCCTCCTTGCCACCCTCGGATGCGTTACCACCCGTCACCCCGATGGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCGACGGTATATCTAACCGCGTTATTAAGCTTCTACCCGTCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCTGCTATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCCGGTAAACCAAAAAATCATCCGACGAGCTACCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTCATCGATGAACAATTCGGATTCCGTGCAAATCACTCATGCGTACAACAGGTGCACCGCCTCACGGAGCACATTCTCGTAGGACTTAACCGACCAAAACCGATCTACACGGCAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAACGGTTTGATTTTCAAACTTTTCAACATGGGCGTACCGGACAGTCTCGTGCTCATCATACGGGACTTCTTGTCTAACCGCTCTTTTCGATATCGAGTAGAGGGAACCCGCTCCTCCCCGCGACTACTCACGGCTGGAGTCCCGCAAGGCTCCGTTCTTTCTCCGCTCCTATTTAGTTTATTTGTTAATGATATTCCCCGGTCGCCGCCGACCCAGCTAGCCTTATTCGCTGACGACACAACAGTTTACTACTCAAGTAGAAACAAGTCCCTAATCGCGAGTAAACTCCAGAGTGCAGCGTTAACCCTCGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGCACAGCAGTGTTATTTCAAAGGGGAAACTCACCGCTTATTTCCTCCCGCATTAGGAGGAGAAATATCACACCCCCGATCACCCTCTTCGGCCAACCTATACCCTGGGCCAGGAAGGTCAAGTACCTGGGAGTCACCCTGGATGCATCCATGACATTCCGCCCGCATATAAAAACAGTCCGCGACCGTGCCGCATTTATTCTCGGCAGACTCTATCCCATGATCTGTAAGCGGAGTAAAATGTCCCTTCGGAACAAGGTGACACTTTACAAAACTTGCATAAGGCCCATCATGACTTACGCGAGTGTGGTGTTCGCTCACGCGGCCCGCACACACATAGACACCCTCCAATCCCTACAATCCCGCTTTTGTAGGTTAGCCGTCGGGGCTCCGTGGTTCGTGAGGAACATCGACTTACACGATGACCTGGGCCTCGAATCGATCCGCAAACACATGAAGTCAATGTCGGAACGTTACTTCGATAAGTCTATGCGTCATGATAATCGCCTTATCGTTGCCACCGCTGATTACTCCCCGAATCCTGATCACGCCGGAGCAAGTCACCGTCGTCGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAACTCTTGCATTAGATACCTTCAGCTCTAACACTAGGAGCAGGCTGAGGAACCCCGGTAACCGTACTCGTCGAACTCGACAAAGAGGTCGACGTGCAACCTAA
Protein
MVRNDRLTARGGGTVIYYRRALHCVPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIIAPLTPTHYPLNIAHRPDILDIALLKNVTLRLHSIEVVSELDSDHRPVIMKLGRAPDSVPVTRTVVDWHTLGISLAESDPPSLPFSPDSTPSPQDTAEAIDIVTSHITSTLDRSSKQVVAEDFLHRFELPDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRITEVRDARWSNFLEGLAPSQRSYYRLARALKSDTVVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRANHSCVQQVHRLTEHILVGLNRPKPIYTAALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRLLTAGVPQGSVLSPLLFSLFVNDIPRSPPTQLALFADDTTVYYSSRNKSLIASKLQSAALTLGQWFRKWRIDINPAKSTAVLFQRGNSPLISSRIRRRNITPPITLFGQPIPWARKVKYLGVTLDASMTFRPHIKTVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPIMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNIDLHDDLGLESIRKHMKSMSERYFDKSMRHDNRLIVATADYSPNPDHAGASHRRRPRHVLTDPSDPITLALDTFSSNTRSRLRNPGNRTRRTRQRGRRAT

Summary

Catalytic Activity
a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)
Cofactor
Mg(2+)
Mn(2+)
Miscellaneous
Prefers poly(rC) and poly(rA) as template and activated DNA is not effective.
Keywords
Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  
Feature
chain  Probable RNA-directed DNA polymerase from transposon BS
EC Number
2.7.7.49
EMBL
AB018558    BAA76304.1    U07847    AAA17752.1    AB055391    BAB21761.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    GALX01005299    JAB63167.1    GALX01005359    JAB63107.1    KQ973342    KXZ75569.1    KQ971729    KYB24751.1    GBBI01004395    JAC14317.1    ABLF02042518    ABLF02057746    GGMR01018716    MBY31335.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    ABLF02008153    ABLF02008462    ABLF02008464    GGMS01006359    MBY75562.1    ABLF02034467    GFTR01008262    JAW08164.1    GBBI01004571    JAC14141.1    GFTR01008038    JAW08388.1    GGMS01002992    MBY72195.1    GEZM01053022    JAV74219.1    NEVH01006736    PNF36716.1    GFTR01008279    JAW08147.1    ABLF02024246    NEVH01022639    PNF18527.1    NEVH01011985    PNF31054.1    GGMR01003407    MBY16026.1    NEVH01009134    PNF33528.1    NEVH01027074    PNF13841.1    ABLF02028535    ABLF02028545    NEVH01021205    PNF19912.1    ABLF02041767    GFTR01008261    JAW08165.1    GFTR01008256    JAW08170.1    GFTR01008251    JAW08175.1    GGMR01003864    MBY16483.1    ABLF02029306    ABLF02029314    ABLF02060138    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    NEVH01016302    PNF25823.1    KK119692    KFM76444.1    GGFL01004957    MBW69135.1    GFTR01008271    JAW08155.1    GFXV01000908    MBW12713.1    GGMS01017365    MBY86568.1    ABLF02023911    NEVH01020940    PNF20481.1    NEVH01026386    PNF14434.1    GGFL01005012    MBW69190.1    GGMR01000676    MBY13295.1    NEVH01017470    PNF24199.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    LBMM01013518    KMQ85605.1    RPOV01000134    RPJ78669.1    NWSH01000032    PCG80496.1    GEZM01084969    JAV60363.1    GFTR01008151    JAW08275.1    GGFJ01001844    MBW50985.1    GGFJ01001858    MBW50999.1    GGFJ01001857    MBW50998.1    GGFJ01001842    MBW50983.1    GGFJ01001843    MBW50984.1    S59870    AAB26437.2    GFTR01008246    JAW08180.1    AY060438    AAL25477.1    GGMR01016905    MBY29524.1    GFTR01008257    JAW08169.1    GBBI01003810    JAC14902.1    GGFJ01001822    MBW50963.1    GBGD01000415    JAC88474.1    GGMR01000226    MBY12845.1    GGMR01012443    MBY25062.1    KU543685    AMS38375.1    KK119261    KFM75202.1    GFTR01008260    JAW08166.1    GGFJ01002256    MBW51397.1    DNOY01000259    HBE18313.1    GGMS01000737    MBY69940.1    GGFJ01002257    MBW51398.1    NWSH01007753    PCG62823.1    AF456125    AAL57609.1    GECL01003538    JAP02586.1    GGMS01002955    MBY72158.1    GFTR01008269    JAW08157.1    AY180919    AAN87272.1    GEDC01000337    JAS36961.1    GBGD01000389    JAC88500.1    ABLF02040174    ABLF02040183    ABLF02055266    GFXV01007093    MBW18898.1    GGMR01006491    MBY19110.1    GGMR01006408    MBY19027.1    GGMR01004661    MBY17280.1    M22874    M38643   
Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF03372   Exo_endo_phos
PF07530   PRE_C2HC
PF07727   RVT_2
Interpro
IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       
IPR013103   RVT_2       
SUPFAM
SSF56219   SSF56219       
Gene 3D

Ontologies

Topology

Length:
899
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
3.4196
Exp number, first 60 AAs:
0.0776
Total prob of N-in:
0.04834
outside
1  -  899
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
150.934632
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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